mRNA_H-akashiwo_Contig12.103.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.103.1
Unique NamemRNA_H-akashiwo_Contig12.103.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S0A5N3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A5N3_9DINO)

HSP 1 Score: 394 bits (1012), Expect = 8.600e-129
Identity = 236/439 (53.76%), Postives = 290/439 (66.06%), Query Frame = 1
Query:  124 VSPTEYREKHEISSVGE-RDLPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQI---LQQGDRNKGPG---PQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKK-APLVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAARRRRGAA--VFATTYAAP--PDAGVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWKY 1404
            +S   +R K  ISS  E ++LPDP+Q F+DAPF   ++  L  AGF++PSPIQAQGWP  +EG DLVAVAKTGSGKTLGFLLP    I   L   D  KG     P  LVLAPTREL  QI+AEC +     +VK+      V+GGAPKGPQ+ ALK+  P V+VATPGRL DLM+  + T+ + + LV+DEADRMLDMGFEP+I KIV    A RQTL FTATW K+V+++A  YLR   D  H+ VG TE+LAANRA++QEF E  D EK+  L R++  LPE +K++ F NTKRR +   + +W  G+   ALHGDKAQ ERE  L  +  RG    +FAT   A      GVTHVVN+DM RDVE YVHRIGRT R   A GASITF N AYD+ C+PAL KIA EA Q  P +L+  A++ K  K K    W+Y
Sbjct:  148 LSADAFRSKFHISSAREGQELPDPVQRFDDAPFSKKIRQGLAAAGFTAPSPIQAQGWPVAVEGRDLVAVAKTGSGKTLGFLLPAFRAISKGLAGTDEGKGAAASAPSVLVLAPTRELVSQIEAECAKFEHCSKVKS----LAVFGGAPKGPQLKALKEFRPQVLVATPGRLQDLMEMKAVTLKQASFLVLDEADRMLDMGFEPEIAKIVAETRADRQTLLFTATWPKAVQRIARSYLRE--DHVHVNVGQTEDLAANRAVSQEFFEIGDDEKEMKLWRIIADLPESAKLIAFMNTKRRVDQYTKSFWEKGFEVAALHGDKAQWERERDLG-KFARGECWLLFATDVCARGLDIRGVTHVVNFDMARDVEAYVHRIGRTGRA-GANGASITFFNEAYDMECAPALAKIAREAEQPVPDFLQKAADKQKQAKNKL---WRY 575          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S1J4G4_9EUGL (Probable eukaryotic initiation factor 4A n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J4G4_9EUGL)

HSP 1 Score: 387 bits (994), Expect = 1.770e-127
Identity = 223/438 (50.91%), Postives = 287/438 (65.53%), Query Frame = 1
Query:  112 TNHTVSPTEYREKHEISSVGERD---LPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKKA-PLVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAARRRRGAAVFATTYAAPPDA---GVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWKY 1404
            T+  + PTEYR   +I++V   +   LPDP+QS + APF   ++  L  AGF  P+PIQAQGWP ++ G DLVAVAKTGSGKTL FLLP++  + +   +   P  +ALVLAPTRELA+QI        A  +  +G  C  VYGG PKG QV AL++  P ++VATPGRL+DL+D G+  +G +  LV+DEADRMLDMGFE  +++I+  +PAARQT  FTATW K+V ++A  YLR   D  HI VG TE+LAAN+A+TQ+F E DDSEKD  L  ++ A+ E  KV+ FANTKRR + + +  W CG+   A+HG+K Q ER+  LA      A +   T          GV+HV+N+DM RDVE YVHRIGRT RG  A GASITF N AYD+ C+PAL+KIA EAGQ  P +L   A RA   K KQ   W+Y
Sbjct:   48 TDRGLPPTEYRAMKQIAAVSRAEGAALPDPVQSLDQAPFGKRLRKPLLAAGFMEPTPIQAQGWPVMMAGTDLVAVAKTGSGKTLAFLLPILRHLAKSPPQPASP-VEALVLAPTRELALQIHT------AAAKFGSGAGCLCVYGGVPKGGQVQALQQERPSLLVATPGRLIDLLDDGAVRLGAIRFLVLDEADRMLDMGFEEAMRRIMADVPAARQTALFTATWPKAVRRLADTYLRP--DHVHINVGETEDLAANKAVTQQFFELDDSEKDGKLWELLSAMQETDKVIVFANTKRRIDNMEKMVWSCGWSCVAMHGNKTQGERDKGLAQFVAGTAPILLATDVCARGLDINGVSHVINFDMARDVESYVHRIGRTGRG-GASGASITFFNAAYDVDCAPALMKIALEAGQPVPPFLEKAAGRAGKGKNKQ---WRY 472          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S4KUW4_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUW4_GUITH)

HSP 1 Score: 371 bits (953), Expect = 1.620e-120
Identity = 217/420 (51.67%), Postives = 274/420 (65.24%), Query Frame = 1
Query:  157 ISSVGERDLPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKKAPLVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPA--ARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAARRRRGAAVFATTYAAPPDA---GVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWK 1401
            +S  GE   P  ++S + +PF  S+  A+K AGF+SPSPIQ+Q WP    G D+VAVAKTGSGKTLGFLLP    + + G    G G + LVLAPTRELA+QI++EC +   G E +A   C  +YGG P GPQ AA+K+ P +V+ATPGRLVDLM   S  + +  ++V+DEADRMLDMGFEPQIKK+  ALPA  ARQTLFFTATW K+V KMAGK+L+       +  G   EL+AN+A+ Q F  A D EKDA L +++  LPE ++V+ FANTKRR + L++  W  G G  A+HGDK Q +R+ ALA   +  A +   T  A       GVTHV+N+DM RDVE YVHRIGRT R     G SITF N  YD  C+PAL+KIA++AGQ  P WL       K  K K  K+WK
Sbjct:  116 LSGGGEHVAPSCVRSLDGSPFSKSIVKAMKDAGFTSPSPIQSQAWPIASAGYDMVAVAKTGSGKTLGFLLPAFSYLEKLGGGG-GRGCKVLVLAPTRELAIQIESECKKF--GKEAQA--TCCCLYGGVPVGPQKAAMKQDPKIVIATPGRLVDLMSQDSCDISKCGYVVLDEADRMLDMGFEPQIKKVFDALPAVEARQTLFFTATWPKAVRKMAGKFLKEDLFQIFVDGGEDAELSANKAVKQRFVHATDDEKDAKLWKILVELPENARVVCFANTKRRVDYLSKALWDEGIGTCAIHGDKQQQDRDKALAQFVKGEAPLMIATDVAARGLDIKGVTHVINFDMARDVESYVHRIGRTGRAGEL-GESITFWNPDYDKECAPALIKIAKDAGQEVPDWL------LKFEKVKTNKSWK 523          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A8J5XVA7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVA7_DIALT)

HSP 1 Score: 363 bits (931), Expect = 3.700e-117
Identity = 233/437 (53.32%), Postives = 283/437 (64.76%), Query Frame = 1
Query:  139 YREKHEISSVGERD---LPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDR---NKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKKA-PLVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAA--------RQTLFFTATWQKSVEKMAGKYLRSGADLT-HITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAAR-RRRGAAVFATTYAAP--PDAGVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLK 1392
            YR +H+I +    D   LP  ++ F  APF  +V  AL+ AGFSSP+PIQAQ WP VL G DL+AVAKTGSGKTL FLLP +H +   G R      P P+ALVLAPTRELA+QI+AE  R   G  V    +CA  +GGAP   Q AAL +  P +VVATPGRLVDL+  G+  +G    + +DEADRMLDMGFEPQI +I   LP A        RQTL FTATW K+V K+A  YLR+ A +T  I  G+  EL ANRA++Q F  A D EKD  L   + ALP+GS+V+ FANTKRR E+L++ +W  G+G  A+HGDK Q ER+AALA+    R   +FAT  AA      GVTHVVN+DM +DVE YVHRIGRT R     GAS+TF N  YD  C+PALVKIA +AGQ  P WL    ERA+   GKQ K
Sbjct:   94 YRAEHQIGAGEGTDASALPACVRDFSRAPFAPAVLGALRAAGFSSPTPIQAQAWPIVLSGADLIAVAKTGSGKTLAFLLPALHVLTAGGARAPAGGAPSPRALVLAPTRELAMQIEAESSRF--GKCVGCASLCA--FGGAPVHAQKAALLRLRPDMVVATPGRLVDLLGQGALELGSCGIVTLDEADRMLDMGFEPQISQIFAKLPPAAAVGAQSSRQTLCFTATWPKAVRKLAASYLRADATITLFIGGGADAELEANRAVSQLFVHATDDEKDRKLFDFLCALPDGSRVVVFANTKRRVESLSKRFWDEGFGTCAIHGDKKQNERDAALASFVANRSPLMFATDVAARGLDIKGVTHVVNFDMAKDVESYVHRIGRTGRAGEL-GASVTFWNPDYDKECAPALVKIARDAGQPVPDWLAKF-ERARA--GKQWK 522          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: L1JAP5_GUITC (Uncharacterized protein (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAP5_GUITC)

HSP 1 Score: 341 bits (875), Expect = 9.210e-111
Identity = 206/406 (50.74%), Postives = 258/406 (63.55%), Query Frame = 1
Query:  199 SFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKKAPLVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPA--ARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAARRRRGAAVFATTYAAPPDA---GVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWK 1401
            S + +PF  S+  A+K AGF+SPSPIQ+Q WP    G D+VAVAKTGSGKTLGFLLP    + + G    G G + LVLAPTRELA+QI++EC +   G E +A   C  +YGG P GPQ AA+K+ P +V+ATPGRLVDLM   S  + +  ++V+DEADRMLDMGFEPQIKK+  ALPA  ARQTLFFTATW K+V KMAGK+L+       +  G   EL+AN+A+ Q F  A D EKDA L +++  LPE ++V+ FANTKRR + L+                K Q +R+ ALA   +  A +   T  A       GVTHV+N+DM RDVE YVHRIGRT R     G SITF N  YD  C+PAL+KIA++AGQ  P WL       K  K K  K+WK
Sbjct:    1 SLDGSPFSKSIVKAMKDAGFTSPSPIQSQAWPIASAGYDMVAVAKTGSGKTLGFLLPAFSYLEKLGGGG-GRGCKVLVLAPTRELAIQIESECKKF--GKEAQA--TCCCLYGGVPVGPQKAAMKQDPKIVIATPGRLVDLMSQDSCDISKCGYVVLDEADRMLDMGFEPQIKKVFDALPAVEARQTLFFTATWPKAVRKMAGKFLKEDLFQIFVDGGEDAELSANKAVKQRFVHATDDEKDAKLWKILVELPENARVVCFANTKRRVDYLS----------------KQQQDRDKALAQFVKGEAPLMIATDVAARGLDIKGVTHVINFDMARDVESYVHRIGRTGRAGEL-GESITFWNPDYDKECAPALIKIAKDAGQEVPDWL------LKFEKVKTNKSWK 378          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S0I714_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0I714_MICPS)

HSP 1 Score: 333 bits (855), Expect = 3.390e-106
Identity = 218/449 (48.55%), Postives = 266/449 (59.24%), Query Frame = 1
Query:  193 IQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQG----DRNKGPG-----PQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKKAP----------LVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAA---RQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTE---------------------ELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAAR-RRRGAAVFATTYAAP--PDAGVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWK 1401
             ++F+ APF A+VKA L   GF++PS IQ   WP    G D +AVAKTGSGKTL FLLP++H++  +     D +  P      P ALVLAPTRELA+QI AE D+   G   +A  V   VYGGAP   Q   L  A            VVVATPGRL DLM  GS  + R   +V+DEADRML+MGFEPQ+K+I GALP++   RQTL FTATW K+V KMA  YL +GA       G+ +                     ELAAN+A++Q F  A D EKD  +  ++  LPEGS+V+ FANTKRR E LA+ +W  G+G  ++HGDK Q EREAAL      R   +FAT  AA      GVTHVVN+DM RDVE YVHRIGRT R     G S+TF N  YD  C+PAL KIA +AGQ  P+WL      AK  K K+ K WK
Sbjct:   52 FETFDAAPFSAAVKALLTAKGFTAPSKIQQHAWPVACAGRDAIAVAKTGSGKTLAFLLPILHRMEARAATPADESSAPASSVPEPDALVLAPTRELALQIHAEADKF--GAATRAAAVA--VYGGAPMRKQKEELVAAHGRRKRGAATGTVVVATPGRLCDLMKQGSLNLRRCEFIVLDEADRMLEMGFEPQLKEIFGALPSSESGRQTLLFTATWPKAVRKMAASYLAAGAKGADSREGNDDAGEETGAVKIFLGEGDGGDGAELAANKAVSQRFLHATDDEKDKKMYDLLCELPEGSRVVAFANTKRRVENLAKTFWDFGFGTVSVHGDKKQNEREAALKKFVDDRCPLMFATDVAARGLDIKGVTHVVNFDMARDVESYVHRIGRTGRAGEL-GESVTFWNPDYDKECAPALCKIARDAGQEVPEWL------AKYEKTKESKQWK 489          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S4LLM4_9EUGL (Probable eukaryotic initiation factor 4A (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLM4_9EUGL)

HSP 1 Score: 329 bits (843), Expect = 4.290e-103
Identity = 206/421 (48.93%), Postives = 254/421 (60.33%), Query Frame = 1
Query:  121 TVSPTEYREKHEISSVGERDLPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALK--KAPLVVVATPGRLVDLM--DGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALA--ARRRRGAAVFATTYAAPPDA-GVTHVVNYDMPRD--VEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMA 1356
            T+SP EYR + +I   G     DPIQ F D P   +   +L+RAGF  PS IQAQ WP  L G DL+AVAKTGSGKTL FL+P    I       +G GP ALVLAPTRELA QI+AE  +   G      G+C   YGG PKGP +  L+  + P VV ATPGR+ DL+  +  + T+      ++DEADRMLDMGFEPQI  I+  +P  RQTL FTATW K V  +A  YL+   D  HIT+G+ ++L AN+AITQ+F   ++ EKDA L  ++  LPEG K L FAN KR+ E+LA+   R   GA A+HGDK Q ER+ AL       R   V     A   D  GVTHV+NYDMP    VE YVHRIGRT R     G SITF+N   + PC   L KI ++AGQ  P W+R+ A
Sbjct:  164 TLSPEEYRREMQIDIKGGC-AADPIQRFSDLPVPQTFIESLERAGFQQPSAIQAQSWPITLSGKDLIAVAKTGSGKTLSFLMPAYKLIKSSPPLQRGKGPMALVLAPTRELACQIEAENRKF--GFAAGIRGLCC--YGGTPKGPMIRGLRGFQPPHVVTATPGRMNDLLTLEPPATTLDNCKMCILDEADRMLDMGFEPQINSIIEWIPKERQTLLFTATWPKEVRALADTYLKP--DRLHITIGNPDQLTANKAITQKFLRVENFEKDAKLFEIIAELPEGHKTLVFANMKRQCESLAKVMIRKSIGATAIHGDKEQWERDRALKDFVTGYRPILVATDVAARGLDVKGVTHVINYDMPAADAVENYVHRIGRTGRA-GKTGVSITFLND-DNAPCGEGLKKILDDAGQEVPDWIREWA 575          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S1IF37_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IF37_9EUGL)

HSP 1 Score: 327 bits (837), Expect = 5.240e-103
Identity = 210/435 (48.28%), Postives = 266/435 (61.15%), Query Frame = 1
Query:  106 NGTNHTVSPTEYREKHEISSVGERDLPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALK--KAPLVVVATPGRLVDLMDGGSAT--VGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAAR-RRRGAAVFATTYAAP--PDAGVTHVVNYDMPR--DVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGK 1383
            NG    VS  EYR+ H+IS +G  D P   QS+  AP    +KA   +AGFS+PSPIQAQ WP    G D++AVA+TGSGKTLGFL+P    I +  +  +G GP ALVLAPTRELAVQI+AE  +   G      G+C   YGG PKGP +  L+  + P +VVATPGR+ DL+        +     +V+DEADRMLDMGFEPQIK I+  +P  RQ LF+TATW K V+ +A  YL+  AD  H+T+G+ ++L AN+ ITQ+FH  D+ EK + L  +++ LPEG K L FAN KR  E+LA+   R G GA A+HGDK Q ER+ AL          +FAT  AA      GV+HVVNYDMPR   +E YVHRIGRT R   A G +IT +    D   +  L KI  EA Q  P ++   A R  G KGK
Sbjct:  114 NGKVEEVSDAEYRKIHQISVLG-GDAPTCWQSYNSAPIQEQLKAQFTKAGFSAPSPIQAQSWPIAFAGKDMIAVARTGSGKTLGFLIPAYALIKKNPNPARGGGPIALVLAPTRELAVQIEAENKKF--GFAHGIRGLCC--YGGTPKGPMIHTLRGFQPPHIVVATPGRMNDLLQLTPVVTNLNNCKFVVLDEADRMLDMGFEPQIKTIIDQVPEGRQMLFYTATWPKDVQFLANTYLK--ADKVHVTIGNPDQLTANKCITQKFHLVDEIEKMSRLEEILQELPEGHKTLIFANQKRTCESLAKSCIRKGLGATAIHGDKEQWERDQALKQFVTGHRPLLFATDVAARGLDVKGVSHVVNYDMPRADGIENYVHRIGRTGRA-GATGVAITLLTD-DDAKTAAGLAKILVEAEQEVPSYIEQWAARHGG-KGK 538          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A8J2B4F6_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2B4F6_9DINO)

HSP 1 Score: 329 bits (844), Expect = 5.630e-103
Identity = 204/440 (46.36%), Postives = 266/440 (60.45%), Query Frame = 1
Query:  190 PIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQG---DRNKGPGPQALVLAPTRELAVQIKAECDRACAGL---------EVKAGGVCAVVYGGAPKGPQVAALKKAP--LVVVATPGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAA--RQTLFFTATWQKSVEKMA--GKYL-------------RSGADLTH-ITVGSTEELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAA-RRRRGAAVFATTYAAP--PDAGVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWKY 1404
            P + FE++ F   V   L   GF++P+PIQAQ WP   EG+DLVAVAKTGSGKTL FLLP   +ILQ     D + G GP+ LVLAPTRELA QI  +  R                ++   C ++YGG PK PQ   LK++   LV+ ATPGRL D M  GS  +  VA L +DEADRML+MGFEPQ+K+IV  LP +  RQTL F+ATW K+++K+     YL              S   +T+ I VG T++LAAN+A+ QEF+E  D  KD  L ++++ L +  K + FANTKRR + L++D W  GY  + L GD+ Q +R+ +L   +  +   +F T   A       VTHV+NYDM RDVE Y+HRIGRT R     G SITFVN  YD+ CSPALVKIA+EAGQ  P+WL  +A+++     K  K WKY
Sbjct:  191 PSEHFEESLFGPEVHKELLAGGFTTPTPIQAQVWPIAKEGHDLVAVAKTGSGKTLAFLLPCFEKILQSSSKTDSSIGNGPKLLVLAPTRELATQIDKDARRFLGKFATGTKATEDRTRSATACCLIYGGVPKFPQQKQLKESKNLLVLTATPGRLCDHMKDGSVKLSSVACLAIDEADRMLEMGFEPQMKEIVKELPKSSDRQTLLFSATWPKAMKKLLLQNDYLVREEEKQNVEGSCSSVKKVTYQINVGETDDLAANKAVKQEFYELSDDVKDGKLWKLLDQLKDSDKTIVFANTKRRVQKLSQDVWASGYQCSVLSGDQTQQDRDKSLKEFKENKTKLLFGTDVCARGLDIKDVTHVINYDMARDVESYIHRIGRTGRA-GNNGTSITFVNSDYDMQCSPALVKIAKEAGQEVPEWLEKLAKKSATSGKKVDKLWKY 629          
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Match: A0A7S0KQ98_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KQ98_9CHLO)

HSP 1 Score: 323 bits (828), Expect = 1.410e-102
Identity = 203/404 (50.25%), Postives = 254/404 (62.87%), Query Frame = 1
Query:  214 PFDASVKAALKRAGFSSPSPIQAQGWPAVLEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRELAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALK-KAPLVVVATPGRLVDLMDG-GSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAARQTLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTE---ELAANRAITQEFHEADDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALHGDKAQAEREAALAARRRRGAAVFATTYAAPPDA---GVTHVVNYDMPRDVEQYVHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRDMAERAKGLKGKQLKNWK 1401
            PFD ++ A L    F SPS IQ+  WPA  +G D++AVAKTGSGKTL FLLP+ H+I      N     + LV+APTRELA+QI+AEC++       + G   A VYGGA    Q  AL+ K P VV+ TPGRLVDLM   G  T+ ++  +V+DEADRMLDMGFEPQIK I G  PA RQTL F+ATW K+V K+A  YLR  A +  I VG  E   ELAAN++I+Q F +A D EKD  L +++   P+ S+V+ FANTKRR E L++ +   G+G  ++HGDK QA+REA+L         +   T  A       GVTHV+NYDM RDVE YVHRIGRT R     GA+ITF N  YD  C+PAL KIA +A Q  P+WL      AK  K K+ K WK
Sbjct:   75 PFDKAIIARLSST-FPSPSAIQSAAWPAACDGKDVIAVAKTGSGKTLAFLLPMFHRI-----ENTRGVVEGLVVAPTRELAIQIQAECEK----FGAEHGFQSACVYGGASAHDQRNALRTKKPCVVIGTPGRLVDLMSQEGVLTLSKLKVIVLDEADRMLDMGFEPQIKTIFGDCPAERQTLLFSATWPKAVRKLAAGYLRDKAHVQEIFVGEGELDGELAANKSISQRFIQARDHEKDEHLYKLICEFPDDSRVVVFANTKRRVENLSKTFAAEGFGTVSVHGDKTQADREASLKKFVTNQCPLMMATDVAARGLDIKGVTHVINYDMARDVESYVHRIGRTGRAGEL-GAAITFWNPDYDKQCTPALCKIARDANQDVPEWL------AKFEKTKESKQWK 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0A5N3_9DINO8.600e-12953.76Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S1J4G4_9EUGL1.770e-12750.91Probable eukaryotic initiation factor 4A n=1 Tax=E... [more]
A0A7S4KUW4_GUITH1.620e-12051.67Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A8J5XVA7_DIALT3.700e-11753.32Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
L1JAP5_GUITC9.210e-11150.74Uncharacterized protein (Fragment) n=2 Tax=Guillar... [more]
A0A7S0I714_MICPS3.390e-10648.55Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A7S4LLM4_9EUGL4.290e-10348.93Probable eukaryotic initiation factor 4A (Fragment... [more]
A0A7S1IF37_9EUGL5.240e-10348.28Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J2B4F6_9DINO5.630e-10346.36Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S0KQ98_9CHLO1.410e-10250.25Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:4943833..4945239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog55529.EKX45601
PFAMsDEAD,Helicase_C,WW
Model size1407
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02325,ko:K12823
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03040,ko03410,ko03420,ko05166,ko05202,ko05205,map00230,map00240,map01100,map03030,map03040,map03410,map03420,map05166,map05202,map05205
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009628,GO:0009651,GO:0009987,GO:0010501,GO:0016070,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031974,GO:0031981,GO:0034641,GO:0036211,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046777,GO:0050896,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140096,GO:0140098,GO:1901360,GO:1901564
Exons1
Evalue6.04e-111
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-21_006390.1
EC2.7.7.7,3.6.4.13
Descriptionhelicase activity
Cds size1407
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387117.7409368-CDS-H-akashiwo_Contig12:4943832..49452391681387117.7409368-CDS-H-akashiwo_Contig12:4943832..4945239Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 4943833..4945239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.103.1prot_H-akashiwo_Contig12.103.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 4943833..4945239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.103.1

>prot_H-akashiwo_Contig12.103.1 ID=prot_H-akashiwo_Contig12.103.1|Name=mRNA_H-akashiwo_Contig12.103.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=469bp
EKKAKAGKGKNKNKKRKLNDEKVMCNDHGDGANRSNGTNHTVSPTEYREK
HEISSVGERDLPDPIQSFEDAPFDASVKAALKRAGFSSPSPIQAQGWPAV
LEGNDLVAVAKTGSGKTLGFLLPVIHQILQQGDRNKGPGPQALVLAPTRE
LAVQIKAECDRACAGLEVKAGGVCAVVYGGAPKGPQVAALKKAPLVVVAT
PGRLVDLMDGGSATVGRVAHLVMDEADRMLDMGFEPQIKKIVGALPAARQ
TLFFTATWQKSVEKMAGKYLRSGADLTHITVGSTEELAANRAITQEFHEA
DDSEKDALLVRVVEALPEGSKVLTFANTKRRAEALARDWWRCGYGANALH
GDKAQAEREAALAARRRRGAAVFATTYAAPPDAGVTHVVNYDMPRDVEQY
VHRIGRTARGTAAEGASITFVNRAYDLPCSPALVKIAEEAGQAPPQWLRD
MAERAKGLKGKQLKNWKY*
back to top

mRNA from alignment at H-akashiwo_Contig12:4943833..4945239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.103.1 ID=mRNA_H-akashiwo_Contig12.103.1|Name=mRNA_H-akashiwo_Contig12.103.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1407bp|location=Sequence derived from alignment at H-akashiwo_Contig12:4943833..4945239- (Heterosigma akashiwo CCMP452)
GAAAAGAAAGCCAAGGCCGGGAAGGGAAAGAATAAGAATAAGAAGAGAAA GCTCAACGATGAGAAAGTTATGTGCAATGATCATGGTGATGGCGCGAATC GATCCAACGGTACAAATCATACTGTCAGCCCAACCGAATATCGTGAGAAG CACGAAATATCTTCCGTTGGAGAACGCGATTTGCCAGATCCCATTCAATC TTTTGAGGACGCACCGTTCGATGCCAGTGTAAAAGCGGCCCTCAAACGGG CTGGATTCAGTTCTCCATCGCCTATTCAGGCCCAGGGATGGCCAGCAGTA CTGGAAGGCAATGATTTGGTGGCTGTCGCCAAGACAGGTTCAGGAAAGAC GCTGGGGTTTCTGCTTCCAGTCATCCACCAAATTTTACAGCAAGGAGATA GGAACAAAGGCCCGGGCCCCCAGGCCCTGGTCCTGGCCCCGACTAGAGAA CTGGCAGTGCAGATCAAAGCGGAGTGTGACCGGGCATGCGCGGGCCTGGA GGTTAAGGCTGGGGGCGTCTGCGCGGTGGTATATGGCGGTGCCCCCAAGG GGCCACAGGTGGCAGCGCTGAAGAAGGCCCCCCTGGTGGTGGTGGCAACT CCCGGGCGCTTGGTGGATCTGATGGACGGCGGTAGTGCTACAGTGGGGCG TGTTGCACACCTTGTGATGGACGAAGCAGACCGGATGCTGGACATGGGGT TTGAGCCACAGATCAAGAAGATCGTGGGGGCGCTGCCCGCTGCCCGGCAG ACGCTGTTCTTCACGGCGACCTGGCAGAAGTCCGTGGAGAAGATGGCGGG CAAGTACCTCCGGTCCGGGGCGGACCTTACGCACATCACGGTGGGCAGCA CGGAGGAGCTGGCGGCCAACCGGGCGATCACCCAGGAGTTCCACGAGGCG GACGACAGCGAGAAGGACGCGCTGCTGGTGCGCGTCGTCGAGGCGCTGCC CGAGGGGAGCAAGGTGCTGACCTTCGCCAACACCAAGCGGCGCGCGGAGG CGCTGGCCCGGGACTGGTGGCGCTGCGGGTACGGCGCCAACGCGCTGCAC GGGGACAAGGCGCAGGCCGAGCGGGAGGCGGCGCTGGCGGCTCGCCGCCG GCGAGGCGCCGCTGTTTTCGCGACGACGTACGCCGCGCCGCCTGACGCGG GGGTCACCCACGTGGTCAACTACGACATGCCGCGGGACGTGGAGCAGTAC GTGCACCGCATCGGCCGCACGGCCCGGGGCACCGCCGCGGAAGGCGCCTC CATCACCTTTGTGAACCGGGCGTACGACCTGCCGTGCTCGCCGGCGCTGG TGAAGATCGCGGAGGAGGCGGGGCAGGCGCCGCCGCAGTGGCTGAGGGAC ATGGCGGAGCGGGCGAAGGGGCTGAAGGGCAAGCAGCTGAAGAACTGGAA GTACTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig12:4943833..4945239-

>mRNA_H-akashiwo_Contig12.103.1 ID=mRNA_H-akashiwo_Contig12.103.1|Name=mRNA_H-akashiwo_Contig12.103.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1407bp|location=Sequence derived from alignment at H-akashiwo_Contig12:4943833..4945239- (Heterosigma akashiwo CCMP452)
GAAAAGAAAGCCAAGGCCGGGAAGGGAAAGAATAAGAATAAGAAGAGAAA
GCTCAACGATGAGAAAGTTATGTGCAATGATCATGGTGATGGCGCGAATC
GATCCAACGGTACAAATCATACTGTCAGCCCAACCGAATATCGTGAGAAG
CACGAAATATCTTCCGTTGGAGAACGCGATTTGCCAGATCCCATTCAATC
TTTTGAGGACGCACCGTTCGATGCCAGTGTAAAAGCGGCCCTCAAACGGG
CTGGATTCAGTTCTCCATCGCCTATTCAGGCCCAGGGATGGCCAGCAGTA
CTGGAAGGCAATGATTTGGTGGCTGTCGCCAAGACAGGTTCAGGAAAGAC
GCTGGGGTTTCTGCTTCCAGTCATCCACCAAATTTTACAGCAAGGAGATA
GGAACAAAGGCCCGGGCCCCCAGGCCCTGGTCCTGGCCCCGACTAGAGAA
CTGGCAGTGCAGATCAAAGCGGAGTGTGACCGGGCATGCGCGGGCCTGGA
GGTTAAGGCTGGGGGCGTCTGCGCGGTGGTATATGGCGGTGCCCCCAAGG
GGCCACAGGTGGCAGCGCTGAAGAAGGCCCCCCTGGTGGTGGTGGCAACT
CCCGGGCGCTTGGTGGATCTGATGGACGGCGGTAGTGCTACAGTGGGGCG
TGTTGCACACCTTGTGATGGACGAAGCAGACCGGATGCTGGACATGGGGT
TTGAGCCACAGATCAAGAAGATCGTGGGGGCGCTGCCCGCTGCCCGGCAG
ACGCTGTTCTTCACGGCGACCTGGCAGAAGTCCGTGGAGAAGATGGCGGG
CAAGTACCTCCGGTCCGGGGCGGACCTTACGCACATCACGGTGGGCAGCA
CGGAGGAGCTGGCGGCCAACCGGGCGATCACCCAGGAGTTCCACGAGGCG
GACGACAGCGAGAAGGACGCGCTGCTGGTGCGCGTCGTCGAGGCGCTGCC
CGAGGGGAGCAAGGTGCTGACCTTCGCCAACACCAAGCGGCGCGCGGAGG
CGCTGGCCCGGGACTGGTGGCGCTGCGGGTACGGCGCCAACGCGCTGCAC
GGGGACAAGGCGCAGGCCGAGCGGGAGGCGGCGCTGGCGGCTCGCCGCCG
GCGAGGCGCCGCTGTTTTCGCGACGACGTACGCCGCGCCGCCTGACGCGG
GGGTCACCCACGTGGTCAACTACGACATGCCGCGGGACGTGGAGCAGTAC
GTGCACCGCATCGGCCGCACGGCCCGGGGCACCGCCGCGGAAGGCGCCTC
CATCACCTTTGTGAACCGGGCGTACGACCTGCCGTGCTCGCCGGCGCTGG
TGAAGATCGCGGAGGAGGCGGGGCAGGCGCCGCCGCAGTGGCTGAGGGAC
ATGGCGGAGCGGGCGAAGGGGCTGAAGGGCAAGCAGCTGAAGAACTGGAA
GTACTGA
back to top