mRNA_H-akashiwo_Contig1198.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1198.9.1
Unique NamemRNA_H-akashiwo_Contig1198.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A3C1C7C7_9SPIO (Maebl n=4 Tax=Spirochaetes TaxID=203691 RepID=A0A3C1C7C7_9SPIO)

HSP 1 Score: 130 bits (328), Expect = 3.080e-34
Identity = 57/101 (56.44%), Postives = 78/101 (77.23%), Query Frame = 2
Query:  260 IKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            +K +   KLA+LIDADNT P ++D L+ E++KYG   +KRIYGDW +PNL+GW+ +++E+A+ PVQQ AY  GK +TDSA+IID MD+ YTE+  GF LVS
Sbjct:    1 MKSDPQLKLAVLIDADNTQPTIIDGLLAEIAKYGVASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFAYTTGKNSTDSAMIIDAMDLLYTENLDGFCLVS 101          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A7C4QDA4_9SPIR (NYN domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C4QDA4_9SPIR)

HSP 1 Score: 130 bits (328), Expect = 3.390e-34
Identity = 56/102 (54.90%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  257 FIKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
             +K ES  KLA+LIDADNT P +++ L+ E++KYG   +KRIYGDW +PNL+GW+ +++E+A+ PVQQ +Y  GK +TDSA+IID MD+ YTE+  GF +VS
Sbjct:    1 MMKSESQLKLAVLIDADNTQPSIIEGLLAEIAKYGIASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFSYTTGKNSTDSAMIIDAMDLLYTENLDGFCIVS 102          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A3D0ZDF6_9SPIR (Maebl n=1 Tax=Treponema sp. TaxID=166 RepID=A0A3D0ZDF6_9SPIR)

HSP 1 Score: 130 bits (327), Expect = 6.530e-34
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = 2
Query:  248 SGSFIKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            +G+   E S  KLA+LIDADNT P +++ L++EV+KYG   +KRIYGDW SPNL+ W+ +++EHA+ P+QQ +Y  GK ATDSA+IID MD+ Y+E   GF +VS
Sbjct:   12 AGNHQVETSQAKLAVLIDADNTQPTIIEGLLNEVAKYGVASVKRIYGDWTSPNLRSWKDRLLEHAIQPIQQFSYTTGKNATDSAMIIDAMDLLYSEKLDGFCIVS 116          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A3P3XNL0_9SPIR (HTH OST-type domain-containing protein n=4 Tax=Spirochaetales TaxID=136 RepID=A0A3P3XNL0_9SPIR)

HSP 1 Score: 129 bits (323), Expect = 1.710e-33
Identity = 55/101 (54.46%), Postives = 78/101 (77.23%), Query Frame = 2
Query:  260 IKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            +K +   KLA+L+DADNT P ++D L+ E++KYG   +KRIYGDW +PNL+GW+ +++E+A+ PVQQ AY  GK +TDSA+IID MD+ YTE+  GF +VS
Sbjct:    1 MKTDPQLKLAVLVDADNTQPAIIDGLLAEIAKYGIASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFAYTTGKNSTDSAMIIDAMDLLYTENLDGFCIVS 101          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: E1RBK0_SEDSS (HTH OST-type domain-containing protein n=2 Tax=Sediminispirochaeta TaxID=1911556 RepID=E1RBK0_SEDSS)

HSP 1 Score: 128 bits (322), Expect = 1.940e-33
Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  260 IKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            I+E+S +KLA+LIDADNT   +++ L+ EV+KYG   +KRIYGDW SPNL+ W+  ++EH+++P+QQ  Y  GK ATDSA+IID MD+ YTE   GF +VS
Sbjct:    5 IEEQSQQKLAVLIDADNTQGSIVEGLLAEVAKYGIASVKRIYGDWTSPNLRSWKEVLLEHSIIPIQQFGYTSGKNATDSAMIIDAMDLLYTERFDGFCIVS 105          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A0F3KI88_9GAMM (Maebl n=1 Tax=Luteibacter yeojuensis TaxID=345309 RepID=A0A0F3KI88_9GAMM)

HSP 1 Score: 127 bits (319), Expect = 4.680e-33
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  260 IKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            +  ++  KLA+L+DADN  P ++D L+ EV+KYGT  +KRIYGDW SP+L GW+T ++EH++ P+QQ AY  GK ATDSA+IID MD+ Y+E   GF +VS
Sbjct:    1 MANDNTDKLAVLVDADNARPAIVDGLLAEVAKYGTAHVKRIYGDWTSPHLNGWKTALLEHSIQPIQQFAYTSGKNATDSAMIIDAMDLLYSERFDGFCIVS 101          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A6M1T7X8_9BACT (NYN domain-containing protein n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1T7X8_9BACT)

HSP 1 Score: 126 bits (317), Expect = 9.770e-33
Identity = 53/101 (52.48%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  260 IKEESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            +  E+ RKLA+LIDADN  P +++ L+ E++KYGT  +KRIYGDW SP+L+ W+  +++H++ P+QQ  Y +GK ATDSA+IID MD+ YTE   GF L+S
Sbjct:    1 MDNETTRKLAVLIDADNAQPSIIEGLLAEIAKYGTANVKRIYGDWTSPHLKSWKDALLQHSIQPIQQFGYTRGKNATDSAMIIDAMDLLYTEKFDGFCLIS 101          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A1K1QKI2_9GAMM (OST-HTH/LOTUS domain-containing protein n=4 Tax=Rhodanobacteraceae TaxID=1775411 RepID=A0A1K1QKI2_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 9.770e-33
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  281 KLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            KLA+LIDADN  P ++D L+ EV+KYGT  +KRIYGDW  PNL GW+T +++H++ P+QQ AY  GK ATDSA+IID MD+ Y+E   GF +VS
Sbjct:    7 KLAVLIDADNARPAIVDGLLAEVAKYGTAHVKRIYGDWTGPNLNGWKTALLDHSIQPIQQFAYTSGKNATDSAMIIDAMDLLYSERFDGFCIVS 100          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A7T8BB94_9SPIR (NYN domain-containing protein n=1 Tax=Breznakiella homolactica TaxID=2798577 RepID=A0A7T8BB94_9SPIR)

HSP 1 Score: 126 bits (317), Expect = 1.380e-32
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 2
Query:  266 EESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            E S  KLA+LIDADNT P +++ L++EV+KYG   +KRIYGDW S NL+ W+ +++E+A+ P+QQ +Y  GK ATDSALIID MD+ YTE+  GF +VS
Sbjct:   12 ESSQAKLAVLIDADNTQPAIIEGLLNEVAKYGIASVKRIYGDWTSTNLRSWKDRLLEYAIQPIQQFSYTTGKNATDSALIIDAMDLLYTENLNGFCIVS 110          
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Match: A0A661EUB0_9GAMM (Maebl n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661EUB0_9GAMM)

HSP 1 Score: 125 bits (314), Expect = 2.610e-32
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 2
Query:  269 ESPRKLALLIDADNTTPHVMDELIHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGATDSALIIDCMDIFYTEDCAGFVLVS 562
            ES  KLA+LIDADN  P ++D L+ E++ YG   +KRIYGDW +PNL+GW+  +++H++ P+QQ AY KGK ATDSA+IID MD+ YT +  GF +VS
Sbjct:    2 ESTDKLAVLIDADNAQPSIVDSLLTEIANYGVASVKRIYGDWTAPNLKGWKEVLLDHSIQPMQQFAYTKGKNATDSAMIIDAMDLLYTGNFNGFCIVS 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1198.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1C7C7_9SPIO3.080e-3456.44Maebl n=4 Tax=Spirochaetes TaxID=203691 RepID=A0A3... [more]
A0A7C4QDA4_9SPIR3.390e-3454.90NYN domain-containing protein n=1 Tax=Spirochaetes... [more]
A0A3D0ZDF6_9SPIR6.530e-3454.29Maebl n=1 Tax=Treponema sp. TaxID=166 RepID=A0A3D0... [more]
A0A3P3XNL0_9SPIR1.710e-3354.46HTH OST-type domain-containing protein n=4 Tax=Spi... [more]
E1RBK0_SEDSS1.940e-3355.45HTH OST-type domain-containing protein n=2 Tax=Sed... [more]
A0A0F3KI88_9GAMM4.680e-3354.46Maebl n=1 Tax=Luteibacter yeojuensis TaxID=345309 ... [more]
A0A6M1T7X8_9BACT9.770e-3352.48NYN domain-containing protein n=1 Tax=Balneolaceae... [more]
A0A1K1QKI2_9GAMM9.770e-3358.51OST-HTH/LOTUS domain-containing protein n=4 Tax=Rh... [more]
A0A7T8BB94_9SPIR1.380e-3256.57NYN domain-containing protein n=1 Tax=Breznakiella... [more]
A0A661EUB0_9GAMM2.610e-3255.10Maebl n=1 Tax=Gammaproteobacteria bacterium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1198contigH-akashiwo_Contig1198:335478..336235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123274.KB899408_gene3915
PFAMsNYN,OST-HTH
Model size568
Max annot lvl203691|Spirochaetes
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.4e-34
EggNOG OGsCOG1432@1|root,COG1432@2|Bacteria,2J6TV@203691|Spirochaetes
DescriptionOST-HTH/LOTUS domain
Cds size531
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.3047235-CDS-H-akashiwo_Contig1198:335477..3356181681387114.3047235-CDS-H-akashiwo_Contig1198:335477..335618Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1198 335478..335618 -
1681387114.3225508-CDS-H-akashiwo_Contig1198:335808..3361981681387114.3225508-CDS-H-akashiwo_Contig1198:335808..336198Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1198 335809..336198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.3355286-UTR-H-akashiwo_Contig1198:336198..3362351681387114.3355286-UTR-H-akashiwo_Contig1198:336198..336235Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1198 336199..336235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1198.9.1prot_H-akashiwo_Contig1198.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1198 335478..336198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1198.9.1

>prot_H-akashiwo_Contig1198.9.1 ID=prot_H-akashiwo_Contig1198.9.1|Name=mRNA_H-akashiwo_Contig1198.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=177bp
MQPRRPQLRRALLIGVFAAVAQLERGTGFRFSGRVEPSTATPSIILSTVR
SPFRKRSLTRLRQWTNPQDGSGSFIKEESPRKLALLIDADNTTPHVMDEL
IHEVSKYGTVKIKRIYGDWGSPNLQGWRTKIMEHALVPVQQMAYVKGKGA
TDSALIIDCMDIFYTEDCAGFVLVSR*
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mRNA from alignment at H-akashiwo_Contig1198:335478..336235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1198.9.1 ID=mRNA_H-akashiwo_Contig1198.9.1|Name=mRNA_H-akashiwo_Contig1198.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=758bp|location=Sequence derived from alignment at H-akashiwo_Contig1198:335478..336235- (Heterosigma akashiwo CCMP452)
GTAGCTTCTTCTGGCGAATATTCCCTGTGGAACAAAAATGCAACCACGCA GGCCTCAGCTCCGCCGTGCTTTACTGATTGGCGTGTTTGCTGCTGTAGCC CAGCTTGAAAGAGGCACAGGGTTTCGATTTTCTGGTCGGGTTGAGCCAAG CACTGCAACACCATCAATAATATTATCAACAGTTAGGAGTCCTTTTCGGA AAAGGAGCCTCACTAGACTCAGGCAGTGGACGAACCCACAAGATGGTTCA GGCTCATTCATAAAGGAAGAAAGTCCCCGAAAGCTCGCGCTCTTAATTGA TGCGGACAACACAACTCCCCATGTAATGGACGAATTAATCCATGAGGTTA GCAAATACGGCACTGTAAAGATAAAACGAATATATGGAGACTGGGGATCG CCCAATCTACAAGGCTGGAGAACTAAGGTAGGTGAAAACCGATTCGCAGA TTCAAGTTGTATCTTTGTCATGTATTTTTTTAATTAAAGTATAGCATGCA GCGTCATACATCAAGGCAACCAACATGTTCTGGCGCTGGATCTAGTTGCA CTTACTGCTGCCAGTTTTCTTGAAGAACAACACCATGTCAGTGTGTCAAT GATATTTTGAAAAAAAGATAATGGAGCACGCTCTGGTTCCAGTGCAGCAG ATGGCGTACGTCAAAGGGAAAGGCGCCACTGACTCTGCGCTGATCATCGA TTGCATGGATATTTTCTACACAGAAGACTGTGCAGGCTTCGTACTAGTCA GCAGGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1198:335478..336235-

>mRNA_H-akashiwo_Contig1198.9.1 ID=mRNA_H-akashiwo_Contig1198.9.1|Name=mRNA_H-akashiwo_Contig1198.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=531bp|location=Sequence derived from alignment at H-akashiwo_Contig1198:335478..336235- (Heterosigma akashiwo CCMP452)
ATGCAACCACGCAGGCCTCAGCTCCGCCGTGCTTTACTGATTGGCGTGTT
TGCTGCTGTAGCCCAGCTTGAAAGAGGCACAGGGTTTCGATTTTCTGGTC
GGGTTGAGCCAAGCACTGCAACACCATCAATAATATTATCAACAGTTAGG
AGTCCTTTTCGGAAAAGGAGCCTCACTAGACTCAGGCAGTGGACGAACCC
ACAAGATGGTTCAGGCTCATTCATAAAGGAAGAAAGTCCCCGAAAGCTCG
CGCTCTTAATTGATGCGGACAACACAACTCCCCATGTAATGGACGAATTA
ATCCATGAGGTTAGCAAATACGGCACTGTAAAGATAAAACGAATATATGG
AGACTGGGGATCGCCCAATCTACAAGGCTGGAGAACTAAGATAATGGAGC
ACGCTCTGGTTCCAGTGCAGCAGATGGCGTACGTCAAAGGGAAAGGCGCC
ACTGACTCTGCGCTGATCATCGATTGCATGGATATTTTCTACACAGAAGA
CTGTGCAGGCTTCGTACTAGTCAGCAGGTAA
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