mRNA_H-akashiwo_Contig1198.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1198.6.1
Unique NamemRNA_H-akashiwo_Contig1198.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A7S2V6J5_9STRA (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J5_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 5.750e-131
Identity = 186/274 (67.88%), Postives = 219/274 (79.93%), Query Frame = 2 
Query:  335 FKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFG-GVEHMEAEKFVGQLYGLGGNATVYKPKG 1153
            +    G SVEIR+VWA NL+ EM  IR++  R+ +IAMDTEFPGVVARP +DYNS DY YQTLRCNVDLLKIIQLG+AF   NG+   GC CWQ NF+F+L EDMYAQ+SIDLLK SGI F  HE+ G+D H FGELL TSGLVLMD VKW+SFHSGYDFGYLLK+LT QALPAEE  FFE+L+LYFP I+DIKYL+   DG+HGGL +LAE++ VER+GPMHQAGSDSLLTA  FF++++ RF   +   +  KF G+LYGLGGN TVYKPKG
Sbjct:    1 YTAPNGKSVEIRDVWASNLEQEMACIRELVPRYPFIAMDTEFPGVVARPASDYNSSDYMYQTLRCNVDLLKIIQLGIAFADKNGEIAEGCACWQFNFKFNLSEDMYAQDSIDLLKASGIEFTRHEKYGIDVHHFGELLITSGLVLMDNVKWISFHSGYDFGYLLKILTCQALPAEEAHFFELLRLYFPCIYDIKYLMTICDGIHGGLNKLAEDIKVERIGPMHQAGSDSLLTAQAFFRLIELRFSVPISEWDDSKFRGELYGLGGNHTVYKPKG 274
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 366 bits (940), Expect = 1.360e-120
Identity = 173/266 (65.04%), Postives = 209/266 (78.57%), Query Frame = 2 
Query:  350 GISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEKFVGQLYGLGGNATVYKP 1147
            G  +EIR VW DNL+ EM +IR++ E + Y+AMDTEFPGVVARPI D+   DYQYQTLRCNVDLLKIIQLGL+F    G+   GCCCWQ NF+FSL EDMYAQ+SIDLLK SGI+F  HE RG+D   FGELL TSGLVL+D V WVSFHSGYDFGYLLK+LT+ ALP +E  FF +LKLYFP ++DIKYL+AS DG HGGL +L ++L VER+G  HQAGSDSLLTA  FFK+V+ +F G+ ++  EK+  +L+G G N TVY+P
Sbjct:   29 GKYLEIRNVWVDNLEEEMAKIREVVETYPYVAMDTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLGEDMYAQDSIDLLKQSGINFDQHEARGIDVLEFGELLMTSGLVLVDNVTWVSFHSGYDFGYLLKVLTSCALPGQEKEFFHLLKLYFPRLYDIKYLMASQDGFHGGLNKLGDDLSVERIGQKHQAGSDSLLTAQVFFKIVETKFNGMSNLSREKYNSELFGYGNNNTVYRP 294
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: W7TF71_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF71_9STRA)

HSP 1 Score: 358 bits (919), Expect = 2.140e-117
Identity = 168/273 (61.54%), Postives = 215/273 (78.75%), Query Frame = 2 
Query:  332 VFKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEKFVGQLYGLGGNATVYKPK 1150
            ++    G  +EIREVW +NLD EM  +R++ E++ Y+AMDTEFPGVVARP+ D ++ DYQY+TL+CNVDLLKIIQLGL+F  ++G+  P C  WQ NFRFSL +D+YA++SI+LLK SGI F+ HE  G+D  RFGELL TSGLVLMD V+W+SFHSGYDFGYLLK+LT  ALP++E  FF++L+ YFP  +DIKYL+ +  G+HGGLQR+AEEL V RVGPMHQAGSDSLLTA TFF++    F G+ ++  EKF G+L+GLG N TVY+ K
Sbjct:   24 IYTGQDGKRMEIREVWLENLDKEMVAVREVVEQYPYVAMDTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHNHTVYRSK 296
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A7S2SP02_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP02_9STRA)

HSP 1 Score: 357 bits (915), Expect = 4.850e-117
Identity = 174/276 (63.04%), Postives = 213/276 (77.17%), Query Frame = 2 
Query:  323 GGGVFKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAE-KFVGQLYGLGGNATVYKP 1147
            G GVF    G  VEIR+VW  NLD EM  IRK+   + ++AMDTEFPGVVARPI D  + DYQYQTLRCNVDLLKIIQLG+AF    G+  PGC  WQ NF+F++ EDMYAQ+SIDLL  +GI F  HE  G+D   FGEL+ TSGLVL+D V+W+SFHSGYDFGYLLKLLT  ALP  E  FFEVLK+YFP  FDIKY+V S + +HGGLQ++A++L+ +R+GPMHQAGSDSL+TA+TFF++ + RFGG   +E + KFV +L+GLGGN TVY+P
Sbjct:   50 GSGVFPGPNGKMVEIRDVWGHNLDEEMANIRKIVVDYPFVAMDTEFPGVVARPITDQYAHDYQYQTLRCNVDLLKIIQLGIAFSNEKGEHPPGCVSWQFNFKFNIEEDMYAQDSIDLLMEAGIDFDRHEEEGIDVMYFGELMITSGLVLVDSVRWISFHSGYDFGYLLKLLTCSALPGGEQEFFEVLKIYFPYYFDIKYMVHSTE-LHGGLQKIADDLNCQRIGPMHQAGSDSLITAATFFRLSEERFGGPSSVEKDHKFVNELFGLGGNCTVYRP 324
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: K8YSH1_NANGC (Poly(A)-specific ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSH1_NANGC)

HSP 1 Score: 358 bits (919), Expect = 2.810e-115
Identity = 168/273 (61.54%), Postives = 215/273 (78.75%), Query Frame = 2 
Query:  332 VFKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEKFVGQLYGLGGNATVYKPK 1150
            ++    G  +EIREVW +NLD EM  +R++ E++ Y+AMDTEFPGVVARP+ D ++ DYQY+TL+CNVDLLKIIQLGL+F  ++G+  P C  WQ NFRFSL +D+YA++SI+LLK SGI F+ HE  G+D  RFGELL TSGLVLMD V+W+SFHSGYDFGYLLK+LT  ALP++E  FF++L+ YFP  +DIKYL+ +  G+HGGLQR+AEEL V RVGPMHQAGSDSLLTA TFF++    F G+ ++  EKF G+L+GLG N TVY+ K
Sbjct:  177 IYTGQDGKRMEIREVWLENLDKEMVAVREVVEQYPYVAMDTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHNHTVYRSK 449
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 353 bits (905), Expect = 3.160e-115
Identity = 170/272 (62.50%), Postives = 209/272 (76.84%), Query Frame = 2 
Query:  335 FKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLL-KLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEKFVGQLYGLGGNATVYKP 1147
            +K   G  VEIR VWADNL+ EM +IR++ E++ YIAMDTEFPGVVARP+ D +  DYQYQTLRCNVDLLKIIQLGL+F    G+   GCCCWQ NF+FSL EDMYAQ+SIDLLK SG+ F  H  RG+D   FGELL  SGLVL+D V W+SFHSGYDFGYLL K+LT+ ALP +E  FF +LK+YFP ++DIKYL+A+ DG HGGL +L ++L VER+G  HQAGSDSLLTA  FFK+V  +F G+ ++  EK+  +L+G G N TVY+P
Sbjct:   20 YKGPDGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAEGCCCWQFNFKFSLDEDMYAQDSIDLLKQSGLEFRDHCARGIDVIDFGELLIASGLVLVDNVTWISFHSGYDFGYLLGKVLTSSALPGQEKDFFTLLKMYFPRLYDIKYLMANQDGFHGGLNKLGDDLAVERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREKYNLELFGYGNNNTVYRP 291
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 7.310e-114
Identity = 171/267 (64.04%), Postives = 202/267 (75.66%), Query Frame = 2 
Query:  350 GISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGD-PVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEK----FVGQLYGLGGNAT 1135
            G  VEIR VWADNL+ EM  IR++ E + Y+AMDTEFPGVVARP+ D+N PD+QYQTLRCNVD+LK+IQLGL+F    G+ P  GCC WQ NF F+L EDMYA +SI LLK SGI F  HERRG+D   FGELL TSGLVL+  V W+SFHSGYDFGYL+KLLT   LP +E  FF++L+LYFP I+DIKYLV+S DG HGGL +LA++L VER+GPMHQAGSDSLLT   F KV    F GV +++  K    F GQLYG GGN T
Sbjct:   52 GRLVEIRNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIQLLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLIKLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDQGKSRGKFAGQLYGYGGNQT 318
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BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 8.630e-114
Identity = 172/272 (63.24%), Postives = 207/272 (76.10%), Query Frame = 2 
Query:  350 GISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGD-PVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEK----FVGQLYGLGGNAT-VYKP 1147
            G  VEIR VWADNL+ EM  IR++ + + Y+AMDTEFPGVVARP+ D+N PD+QYQTLRCNVD+LK+IQLGL+F    G+ P  GCC WQ NF F+L EDMYA +SI+LLK SGI F  HERRG+D   FGELL TSGLVL+  V W+SFHSGYDFGYL+KLLT   LP +E  FF++L+LYFP I+DIKYLV+S DG HGGL +LA++L VER+GPMHQAGSDSLLT   F KV    F GV +++  K    F GQLYG GGN T +Y+P
Sbjct:   55 GRLVEIRNVWADNLETEMVIIRELVQDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNLSEDMYAHDSIELLKNSGIDFQGHERRGIDLQDFGELLMTSGLVLLPNVTWLSFHSGYDFGYLIKLLTCSNLPTQESDFFDLLQLYFPKIYDIKYLVSSQDGFHGGLNKLADDLKVERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDLGKSRGKFAGQLYGYGGNQTGIYRP 326
[Close]
BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A7S2F743_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F743_9STRA)

HSP 1 Score: 342 bits (878), Expect = 7.710e-112
Identity = 163/274 (59.49%), Postives = 206/274 (75.18%), Query Frame = 2 
Query:  326 GGVFKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFGGVEHMEAEKFVGQLYGLGGNATVYKP 1147
            G +F    G  VEIR+VW  NLD+EM  +RK  E + YIAMDTEFPGVVARPI D  + DYQYQTLRCNVDLLKIIQLG+A V   GD    C  WQ NF+F+L+EDMYAQ+SIDLLK +GI F  HE  G+D + FGEL+TTSGLVL++ V+W+SFHSGYDFGYLLKLLT  ALP+ E  FFE+LK YFP ++DIK+++  ++ +HGGLQ++A++L  +R+GPMHQAGSD+LLTA T+FK+             +K+  +L+GLGGN TVY+P
Sbjct:   23 GSIFPGPNGKLVEIRDVWRSNLDSEMALVRKCVEDYPYIAMDTEFPGVVARPITDQYANDYQYQTLRCNVDLLKIIQLGIALVNEKGDHPDDCVAWQFNFKFNLQEDMYAQDSIDLLKEAGIDFKRHETEGIDVNYFGELMTTSGLVLVENVRWISFHSGYDFGYLLKLLTCVALPSNESEFFELLKFYFPYLYDIKFMINGMNDLHGGLQKIADDLHAQRIGPMHQAGSDALLTADTYFKLCARLESDSAQDYDQKYENELFGLGGNCTVYRP 296
[Close]
BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Match: A0A7S2E3S6_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E3S6_9STRA)

HSP 1 Score: 339 bits (869), Expect = 6.450e-110
Identity = 165/276 (59.78%), Postives = 207/276 (75.00%), Query Frame = 2 
Query:  335 FKTSKGISVEIREVWADNLDAEMNEIRKMAERHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDPHRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFEVLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLLTASTFFKVVQARFG------GVEHMEAEKFVGQLYGLGGNATVYK 1144
            F+   G ++EIR VWA+N+  EM  IR++ E H Y+AMDTEFPGVVARP+++  SPD+ Y++L+CNVDLLKIIQLGL+F   +G+  PGC CWQ NF+FSL +DM+AQ+SIDLL  SGISF  H  RG+DPHRFGELL  SGLVL DRVKWVSFHSGYD+GYLLKLLT Q+LP +E  FF+ LKLYFP I+DIKY+ +  DG  GGLQ+LA++L   R+GP HQAGSDSLLT +T+F + + +F       G   ++  KF  +LYG G N TV K
Sbjct:   63 FQDDTGKNLEIRNVWAENVQEEMAVIREIIETHPYVAMDTEFPGVVARPVSETYSPDFHYKSLKCNVDLLKIIQLGLSFADEDGNFAPGCPCWQFNFKFSLNDDMFAQDSIDLLVNSGISFEDHASRGIDPHRFGELLMVSGLVLDDRVKWVSFHSGYDYGYLLKLLTTQSLPMDEKGFFDTLKLYFPTIYDIKYMTSLCDGHFGGLQKLADDLGCPRIGPEHQAGSDSLLTMTTYFALAEKKFTTSAGPEGALVVDDTKFKNELYGYGSNHTVRK 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1198.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V6J5_9STRA5.750e-13167.88Poly(A)-specific ribonuclease (Fragment) n=1 Tax=F... [more]
A0A835Z498_9STRA1.360e-12065.04Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
W7TF71_9STRA2.140e-11761.54Poly(A)-specific ribonuclease n=1 Tax=Nannochlorop... [more]
A0A7S2SP02_9STRA4.850e-11763.04Poly(A)-specific ribonuclease n=1 Tax=Rhizochromul... [more]
K8YSH1_NANGC2.810e-11561.54Poly(A)-specific ribonuclease n=2 Tax=Monodopsidac... [more]
A0A836C813_9STRA3.160e-11562.50Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
D8LIU5_ECTSI7.310e-11464.04Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A6H5JI77_9PHAE8.630e-11463.24Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A7S2F743_9STRA7.710e-11259.49Poly(A)-specific ribonuclease n=1 Tax=Dictyocha sp... [more]
A0A7S2E3S6_9STRA6.450e-11059.78Poly(A)-specific ribonuclease n=1 Tax=Helicotheca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1198contigH-akashiwo_Contig1198:184398..186302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIU5
Preferred nameCNOT8
PFAMsCAF1
Model size1468
Max annot lvl2759|Eukaryota
KEGG koko:K12581
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000122,GO:0000175,GO:0000278,GO:0000288,GO:0000289,GO:0000290,GO:0000291,GO:0000932,GO:0000956,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001932,GO:0001959,GO:0001960,GO:0002252,GO:0002376,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004535,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005937,GO:0005975,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008285,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0018130,GO:0018995,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030014,GO:0030015,GO:0030154,GO:0030330,GO:0030427,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0033962,GO:0034243,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035194,GO:0035195,GO:0035556,GO:0035770,GO:0036464,GO:0040029,GO:0042025,GO:0042127,GO:0042325,GO:0042509,GO:0042770,GO:0042995,GO:0043167,GO:0043169,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043332,GO:0043656,GO:0043657,GO:0043900,GO:0043902,GO:0043903,GO:0043928,GO:0043933,GO:0044085,GO:0044094,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045069,GO:0045070,GO:0045088,GO:0045495,GO:0045786,GO:0045787,GO:0045824,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045944,GO:0046425,GO:0046483,GO:0046700,GO:0046872,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050730,GO:0050776,GO:0050777,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051286,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060211,GO:0060213,GO:0060255,GO:0060293,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0061013,GO:0061014,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071156,GO:0071158,GO:0071704,GO:0071826,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0075341,GO:0080090,GO:0080134,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0120025,GO:0120038,GO:0140098,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903900,GO:1903902,GO:1904892,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Exons3
Evalue1.42e-116
EggNOG OGsCOG5228@1|root,KOG0304@2759|Eukaryota
Descriptionexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
Cds size1080
COG categoryA
BRITEko00000,ko00001,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.1993947-UTR-H-akashiwo_Contig1198:184397..1845241681387114.1993947-UTR-H-akashiwo_Contig1198:184397..184524Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1198 184398..184524 +
1681387114.2378259-UTR-H-akashiwo_Contig1198:186041..1863021681387114.2378259-UTR-H-akashiwo_Contig1198:186041..186302Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1198 186042..186302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.2112107-CDS-H-akashiwo_Contig1198:184524..1845671681387114.2112107-CDS-H-akashiwo_Contig1198:184524..184567Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1198 184525..184567 +
1681387114.2201834-CDS-H-akashiwo_Contig1198:184849..1851271681387114.2201834-CDS-H-akashiwo_Contig1198:184849..185127Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1198 184850..185127 +
1681387114.2290428-CDS-H-akashiwo_Contig1198:185282..1860411681387114.2290428-CDS-H-akashiwo_Contig1198:185282..186041Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1198 185283..186041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1198.6.1prot_H-akashiwo_Contig1198.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1198 184525..186041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1198.6.1

>prot_H-akashiwo_Contig1198.6.1 ID=prot_H-akashiwo_Contig1198.6.1|Name=mRNA_H-akashiwo_Contig1198.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=360bp
MKNSENVNLEDEGGGKPSAIKEGNQSAAFPFGDEKQNGFMSGNAGFPLGS
HHNHEDEDDDDRPPIGGGVFKTSKGISVEIREVWADNLDAEMNEIRKMAE
RHHYIAMDTEFPGVVARPIADYNSPDYQYQTLRCNVDLLKIIQLGLAFVQ
ANGDPVPGCCCWQVNFRFSLREDMYAQESIDLLKGSGISFAAHERRGVDP
HRFGELLTTSGLVLMDRVKWVSFHSGYDFGYLLKLLTAQALPAEEGRFFE
VLKLYFPNIFDIKYLVASVDGVHGGLQRLAEELDVERVGPMHQAGSDSLL
TASTFFKVVQARFGGVEHMEAEKFVGQLYGLGGNATVYKPKGPPPPPFAA
AANGEKEEG*
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mRNA from alignment at H-akashiwo_Contig1198:184398..186302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1198.6.1 ID=mRNA_H-akashiwo_Contig1198.6.1|Name=mRNA_H-akashiwo_Contig1198.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-akashiwo_Contig1198:184398..186302+ (Heterosigma akashiwo CCMP452)
CACACCTTGATTTCGATTTCAAAACAATCAAATAGTGAATTGAGATAAAA
AGCAGCACCCGGCAATCGCCGAACCCTTGCACGGTATTAACTCCTAGTTA
TTATCGTTATGCTACTGTTCATTTGCAATGAAGAATTCGGAAAATGTGAA
TTTGGAAGATGAGGGTGGAGGTATGTATTTCAAATACCCAACCATTTCTT
GAGTCTATCTTTGACCGCCCTAAGCCCCGTTGTTTTAGTCGAATATAAGA
ATAGACATATTTTCCCCCTAATTTTCTACTTGTCTGGATCACCATACACC
TTGAGAATGCTGGATGTGAAGATGCTTTGTTTTCAAATGTATTGTTGCAT
TTACATTTGCATAAATATTTACAGCAACTCTGCCCTTCTTTCCAGCCTTG
AAATCTGAAATGGCAAATTCACTAAATATATATATATATTTTTTGATCCC
AGGCAAGCCTTCCGCCATCAAGGAAGGCAACCAATCAGCAGCCTTTCCTT
TTGGGGATGAGAAACAAAATGGCTTCATGTCTGGAAATGCAGGTTTCCCT
TTGGGCAGCCATCACAACCATGAGGACGAAGATGACGATGACCGACCTCC
TATTGGTGGTGGTGTATTCAAAACTAGTAAAGGAATCAGCGTCGAGATTA
GGGAGGTGTGGGCAGATAATCTCGATGCAGAAATGAATGAAATTCGAAAA
ATGGCAGAGAGACACCATTACATTGCAATGGTAAGCTCAATGCTGTGAAC
TGCCAAAATGATTCCACACACTTACACATGCCAGTCCGCCTGACCATAAA
CCGATTCCCTTTGAAGCTGGCACAGAGTGTTGATAAATTCATATCACAAA
AATTGACGCCTTTATACCCCTCCCCTGTTTGGCAGGACACTGAATTCCCT
GGCGTGGTGGCCCGGCCCATCGCGGACTACAACAGCCCCGACTACCAGTA
CCAGACGCTGCGGTGCAATGTGGACCTGCTCAAGATCATCCAACTCGGCC
TGGCCTTCGTGCAGGCGAACGGCGACCCGGTGCCTGGCTGCTGCTGCTGG
CAGGTGAACTTCCGGTTCAGCCTGCGCGAGGACATGTACGCGCAGGAGTC
CATCGACCTGCTGAAGGGCTCGGGCATCAGCTTCGCCGCGCACGAGCGGC
GGGGCGTGGACCCGCACCGGTTCGGCGAGCTGCTGACCACCTCCGGGCTG
GTGCTGATGGACCGCGTCAAGTGGGTCTCCTTCCACAGCGGCTACGACTT
CGGCTACCTGCTGAAGCTGCTGACCGCGCAGGCGCTGCCCGCCGAGGAGG
GCCGCTTCTTCGAGGTGCTCAAGCTCTACTTCCCGAACATCTTCGACATC
AAGTACCTGGTGGCCAGCGTGGACGGCGTGCACGGCGGCCTGCAGCGGCT
GGCCGAGGAGCTGGACGTGGAGCGCGTGGGGCCCATGCACCAGGCCGGCT
CGGACAGCCTGCTCACGGCCAGCACCTTCTTCAAGGTCGTGCAGGCGCGC
TTCGGCGGGGTGGAGCACATGGAGGCCGAGAAGTTCGTGGGCCAGCTCTA
CGGCCTGGGCGGCAACGCCACCGTGTACAAGCCCAAGGGCCCGCCCCCGC
CGCCCTTCGCCGCCGCGGCCAACGGGGAGAAGGAGGAGGGCTGAGGGGGC
CGCGGCCGGCACCGCGCCGGCCCGGCGGCCCCTCCTGCGAGTAGGCGCCA
CCATAATAAGTGCGACCGGCGCTTCCCTTGCCACCACTACTGTGACCTGA
GGGGACCGCACGCAGAATTGGCGAAGACAGCACGAGACACCAAAGGCGAA
GAGTTGATGCCGCCTTAGAGCCATTCCTTCCTTTCCTCTTTCCTCTTGTT
GAAAATTCTTTACTATTTTTTGGCACCATAATCAATCAATTTTGTCAAAC
AAATA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1198:184398..186302+

>mRNA_H-akashiwo_Contig1198.6.1 ID=mRNA_H-akashiwo_Contig1198.6.1|Name=mRNA_H-akashiwo_Contig1198.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1080bp|location=Sequence derived from alignment at H-akashiwo_Contig1198:184398..186302+ (Heterosigma akashiwo CCMP452)
ATGAAGAATTCGGAAAATGTGAATTTGGAAGATGAGGGTGGAGGCAAGCC
TTCCGCCATCAAGGAAGGCAACCAATCAGCAGCCTTTCCTTTTGGGGATG
AGAAACAAAATGGCTTCATGTCTGGAAATGCAGGTTTCCCTTTGGGCAGC
CATCACAACCATGAGGACGAAGATGACGATGACCGACCTCCTATTGGTGG
TGGTGTATTCAAAACTAGTAAAGGAATCAGCGTCGAGATTAGGGAGGTGT
GGGCAGATAATCTCGATGCAGAAATGAATGAAATTCGAAAAATGGCAGAG
AGACACCATTACATTGCAATGGACACTGAATTCCCTGGCGTGGTGGCCCG
GCCCATCGCGGACTACAACAGCCCCGACTACCAGTACCAGACGCTGCGGT
GCAATGTGGACCTGCTCAAGATCATCCAACTCGGCCTGGCCTTCGTGCAG
GCGAACGGCGACCCGGTGCCTGGCTGCTGCTGCTGGCAGGTGAACTTCCG
GTTCAGCCTGCGCGAGGACATGTACGCGCAGGAGTCCATCGACCTGCTGA
AGGGCTCGGGCATCAGCTTCGCCGCGCACGAGCGGCGGGGCGTGGACCCG
CACCGGTTCGGCGAGCTGCTGACCACCTCCGGGCTGGTGCTGATGGACCG
CGTCAAGTGGGTCTCCTTCCACAGCGGCTACGACTTCGGCTACCTGCTGA
AGCTGCTGACCGCGCAGGCGCTGCCCGCCGAGGAGGGCCGCTTCTTCGAG
GTGCTCAAGCTCTACTTCCCGAACATCTTCGACATCAAGTACCTGGTGGC
CAGCGTGGACGGCGTGCACGGCGGCCTGCAGCGGCTGGCCGAGGAGCTGG
ACGTGGAGCGCGTGGGGCCCATGCACCAGGCCGGCTCGGACAGCCTGCTC
ACGGCCAGCACCTTCTTCAAGGTCGTGCAGGCGCGCTTCGGCGGGGTGGA
GCACATGGAGGCCGAGAAGTTCGTGGGCCAGCTCTACGGCCTGGGCGGCA
ACGCCACCGTGTACAAGCCCAAGGGCCCGCCCCCGCCGCCCTTCGCCGCC
GCGGCCAACGGGGAGAAGGAGGAGGGCTGA
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