mRNA_H-akashiwo_Contig1196.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1196.3.1
Unique NamemRNA_H-akashiwo_Contig1196.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1196.3.1 vs. uniprot
Match: A0A7S3XXC7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXC7_HETAK)

HSP 1 Score: 121 bits (304), Expect = 7.700e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -1 
Query:    1 LVVEQQVQQVGPRVLPGQPAPAHLQQRRALRQLPLDLHEAVAGLGGVLLPLGVHGVRDHQR 183
            LVVEQQVQQVGPRVLPGQPAPAHLQQRRALRQLPLDLHEAVAGLGGVLLPLGVHGVRDHQR
Sbjct:   77 LVVEQQVQQVGPRVLPGQPAPAHLQQRRALRQLPLDLHEAVAGLGGVLLPLGVHGVRDHQR 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1196.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XXC7_HETAK7.700e-34100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1196contigH-akashiwo_Contig1196:141295..141741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G847
PFAMsNTP_transf_2,PAP_assoc
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.08e-06
EggNOG OGsCOG5260@1|root,KOG1906@2759|Eukaryota
EC2.7.7.19
Descriptionpolynucleotide adenylyltransferase activity
Cds size162
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.8216693-CDS-H-akashiwo_Contig1196:141294..1414021681387113.8216693-CDS-H-akashiwo_Contig1196:141294..141402Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1196 141295..141402 -
1681387113.8331673-CDS-H-akashiwo_Contig1196:141666..1417201681387113.8331673-CDS-H-akashiwo_Contig1196:141666..141720Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1196 141667..141720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.8436203-UTR-H-akashiwo_Contig1196:141720..1417411681387113.8436203-UTR-H-akashiwo_Contig1196:141720..141741Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1196 141721..141741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1196.3.1prot_H-akashiwo_Contig1196.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1196 141295..141720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1196.3.1

>prot_H-akashiwo_Contig1196.3.1 ID=prot_H-akashiwo_Contig1196.3.1|Name=mRNA_H-akashiwo_Contig1196.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
MDPQRQKNTAKACYGFMQVQWQLAQCAALLEVRGCWLARQDPRANLLHLL
LYY*
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mRNA from alignment at H-akashiwo_Contig1196:141295..141741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1196.3.1 ID=mRNA_H-akashiwo_Contig1196.3.1|Name=mRNA_H-akashiwo_Contig1196.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=447bp|location=Sequence derived from alignment at H-akashiwo_Contig1196:141295..141741- (Heterosigma akashiwo CCMP452)
CCGCTGGTGATCACGGACCCCATGGACCCCCAGCGGCAGAAGAACACCGC
CAAGGCCTGCTACGGCTTCATGCAGGTGGGTTGCTCACCGCCCACACTCT
CTGCCTCTTTCTCTTGCTCTCGGAAGCAGAAGGAGTGGGTGTTAGAGGGG
GTGGGGGGTGGGCTCACTGCAGACGTCCAGCTTCGACGCTCCCTTTCCTC
TTTTACAGCTACGCCCGCGGACAGCTAACCCTGGACCATGCCGCCGCAAG
CGCGAGAAGGGCCCGCGCACGGCCTGCGAGCGTGCCGCAGCGACGACCCG
AACCGACCCCCATCCCTGCCGCCCGCCGCCGCCCGCCAGGTCCAGTGGCA
GCTGGCGCAGTGCGCGGCGCTGCTGGAGGTGCGCGGGTGCTGGCTGGCCC
GGCAGGACCCGCGGGCCAACCTGCTGCACCTGCTGCTCTACTACTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1196:141295..141741-

>mRNA_H-akashiwo_Contig1196.3.1 ID=mRNA_H-akashiwo_Contig1196.3.1|Name=mRNA_H-akashiwo_Contig1196.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1196:141295..141741- (Heterosigma akashiwo CCMP452)
ATGGACCCCCAGCGGCAGAAGAACACCGCCAAGGCCTGCTACGGCTTCAT
GCAGGTCCAGTGGCAGCTGGCGCAGTGCGCGGCGCTGCTGGAGGTGCGCG
GGTGCTGGCTGGCCCGGCAGGACCCGCGGGCCAACCTGCTGCACCTGCTG
CTCTACTACTAG
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