mRNA_H-akashiwo_Contig1195.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1195.3.1
Unique NamemRNA_H-akashiwo_Contig1195.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1195.3.1 vs. uniprot
Match: A0A7S3XQW7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQW7_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.960e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   55 MVLLDDISTPSKASKIKVADLKSKLEEYGLDTSGVK 162
            MVLLDDISTPSKASKIKVADLKSKLEEYGLDTSGVK
Sbjct:    1 MVLLDDISTPSKASKIKVADLKSKLEEYGLDTSGVK 36
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1195.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XQW7_HETAK1.960e-12100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1195contigH-akashiwo_Contig1195:234881..235150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size108
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.5295823-UTR-H-akashiwo_Contig1195:234880..2349341681387113.5295823-UTR-H-akashiwo_Contig1195:234880..234934Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1195 234881..234934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.541097-CDS-H-akashiwo_Contig1195:234934..2349851681387113.541097-CDS-H-akashiwo_Contig1195:234934..234985Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1195 234935..234985 +
1681387113.5502367-CDS-H-akashiwo_Contig1195:235093..2351501681387113.5502367-CDS-H-akashiwo_Contig1195:235093..235150Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1195 235094..235150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1195.3.1prot_H-akashiwo_Contig1195.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1195 234935..235150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1195.3.1

>prot_H-akashiwo_Contig1195.3.1 ID=prot_H-akashiwo_Contig1195.3.1|Name=mRNA_H-akashiwo_Contig1195.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=36bp
MVLLDDISTPSKASKIKVADLKSKLEEYGLDTSGVK
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mRNA from alignment at H-akashiwo_Contig1195:234881..235150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1195.3.1 ID=mRNA_H-akashiwo_Contig1195.3.1|Name=mRNA_H-akashiwo_Contig1195.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig1195:234881..235150+ (Heterosigma akashiwo CCMP452)
AAAGAGTATATTATATAATAAAAACCAGCTGCTGCCAGCAAAAAAAAGGC
CACCATGGTTTTACTGGATGATATCAGCACCCCCTCAAAGGCCTCAAAAA
TCAAAGTATGCACGGATCTATGTATCAGATCTCTCTTAACCCCCCCCCTT
CCTCCCCCGGTAACCATTCTCCATCTCAACAATGTTGTCCGATACACTTT
GCATGTCACGCAGGTTGCCGATCTCAAAAGTAAACTCGAAGAATATGGTC
TAGACACGTCAGGAGTGAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1195:234881..235150+

>mRNA_H-akashiwo_Contig1195.3.1 ID=mRNA_H-akashiwo_Contig1195.3.1|Name=mRNA_H-akashiwo_Contig1195.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=108bp|location=Sequence derived from alignment at H-akashiwo_Contig1195:234881..235150+ (Heterosigma akashiwo CCMP452)
ATGGTTTTACTGGATGATATCAGCACCCCCTCAAAGGCCTCAAAAATCAA
AGTTGCCGATCTCAAAAGTAAACTCGAAGAATATGGTCTAGACACGTCAG
GAGTGAAG
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