mRNA_H-akashiwo_Contig1192.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1192.10.1
Unique NamemRNA_H-akashiwo_Contig1192.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1192.10.1 vs. uniprot
Match: A0A7S3XNS4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNS4_HETAK)

HSP 1 Score: 105 bits (261), Expect = 3.460e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 LIYADFTPFEDDDDSINFYDSNMGPVHSKKRRLKFPSRKKSRKPAVDDGP 150
            LIYADFTPFEDDDDSINFYDSNMGPVHSKKRRLKFPSRKKSRKPAVDDGP
Sbjct:   72 LIYADFTPFEDDDDSINFYDSNMGPVHSKKRRLKFPSRKKSRKPAVDDGP 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1192.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XNS4_HETAK3.460e-27100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1192contigH-akashiwo_Contig1192:327421..333774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.0021996-CDS-H-akashiwo_Contig1192:327422..3274551681387113.0021996-CDS-H-akashiwo_Contig1192:327422..327455Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1192 327423..327455 -
1681387113.0140958-CDS-H-akashiwo_Contig1192:333657..3337741681387113.0140958-CDS-H-akashiwo_Contig1192:333657..333774Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1192 333658..333774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1192.10.1prot_H-akashiwo_Contig1192.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1192 327423..333774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1192.10.1

>prot_H-akashiwo_Contig1192.10.1 ID=prot_H-akashiwo_Contig1192.10.1|Name=mRNA_H-akashiwo_Contig1192.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
LIYADFTPFEDDDDSINFYDSNMGPVHSKKRRLKFPSRKKSRKPAVDDGP
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mRNA from alignment at H-akashiwo_Contig1192:327421..333774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1192.10.1 ID=mRNA_H-akashiwo_Contig1192.10.1|Name=mRNA_H-akashiwo_Contig1192.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6354bp|location=Sequence derived from alignment at H-akashiwo_Contig1192:327421..333774- (Heterosigma akashiwo CCMP452)
CTCATATATGCAGACTTCACTCCATTTGAAGATGACGATGATAGTATTAA
TTTTTATGATTCCAACATGGGTCCGGTGCATTCCAAAAAGCGACGGCTCA
AATTTCCTAGCCGAAAGGTTTGCCTACTGCTGGGTCTTACACTTCCACAC
ACACAATATCTGTAGACGAGGACAACACACACACACACATGTACATGATA
TTACAATATATGTGCCGAAAGCACTTTTGATGATGCATGTATACATTTCT
TGGTCGTCAGCAAACTATCGGGAGATGCAGGTCGAGCTCAAGAAAGCTTC
TTTTGAGTTTGGCCGTCTTTCTGTGCAGGAACCTGTAGACTTGGTGACCA
GCCCCATCAATGTGGTGATAGACAAGCATGCGCCCTTAGTCTTGATATCT
GATACAACCAAGCCTATTGCCTGGTGGATCCCCTACTGTCAATAGGCATG
GGAGAGGAAGCAGGGGGCCTTCAAGGACGGCTGCAAGTTGGGCATCATGA
GGGACACCAAATGCTGTGTTCAAGTCTGCCGAAAGGCTTTCTCTCAGCAC
CAGGTTGGACTGAAGACCCAGCTTACAAGGACCCGCCATCGGCCATCAAG
CACGAGAGGAGGATGCCAGCCTGCTGAAGAACTACCGGCAGGGAGTAATG
ATAGGCCGCCCGAGGAGGGGGCGGAGGCGCTGGCAACACCGCCGGCTGCC
AAGCAAAAGTAATCAGCCTAGTATTTGGCCTATATTGCCGTTTTGGAGGG
AAAAGCTGGTATGACTCTTATTTACCCATGGTGGTAAAAGTATATGTGAA
GACAAGGTGCATATGTGGAGATAAAGTATATATGTGGAGAATAATGATTG
GTTGGCGCATGTTTCAAGTTGAGAGTTGTATGGTTATCGTGATCTGATTG
GTAAGTTGATGTTGGAAGGTGAATGATGCAGGTGGCAAATGAAGTTGATG
TATGAGTGCAAGTACTGCTGAAGTTTCTTTGTTGTTGTTGGTTGTTGTTG
CAGGATGTGCATGTTGTTGTTGTTGCGATGAATATTGCTGGTGGGCATTT
ACTTCCACCAGCAACCCGACTTGGTCATAAAACCAAAACCACACCTCCTT
GTGACGGGCGGCTGCTGGCACATTGGCACACGGTACATACTATCAACATT
GCTGGTGGGAGTCCTTTGTCCGTACTGACGGCGGAGAAAAAGGGAGATGT
GGATAGAGTGAGAAGGGTGACCGGAAAGAAAAAGACAAAAGAAAATAAAA
GGCGAACAACGCAATTAGGTGGAGGTGCCCGCTGGGTAAAGCCTGAAGAT
CCTACCTAGGTTTTGGACGCCCGCTGGGTAAAGACCTGAAGATTCCCCCT
TCCCTGACGGTGGTGGGTTAACCGGAGACAGCGAGAAAGCGAAATGACAG
AGAAAGCGAAAATGGCAAGCCCTTACAGTGGAGGTTAACTGGATACAGCG
AGACAAGTGATGAAAGAGCGAAAACGATGAGAAGATTCAAGATGAAAGTG
CAGATTCGAGACGGTGACGAAAATAAAGATGAACAGAGCAACGAGGCGAT
TTGATTCCTGGGGATATTCTTTCCGGCGAGCATTGCCGAGGACCAGCATG
TATGGAATGATGATGAAGAGCCACTAGTAATGATATTCACCCCAGTATAC
ACCAAGAAAGGCTAATGATTTGCGAGCCGAGTGGTAGCAGCAGCAGAATG
AAAAATGAGAAGATGATGATACCCTTTATGGTTACAGGAATCAGGGGTAG
TGACAAGTGGCCACGGCTAGGCCCACAACAAAGAGTATGATGATATGGTA
TAAATTCTCTCTTCCTGCCCCATTGGAGCACCATGAGTAAGATGAGCCTA
CAGCTGAAAAGATGAGTACTATGGATTGTGCAGCGCCGTCTTGAAGGACT
TGCTGAGGGGGAATATCGATGTGGATTCCCGCCGCCCAAGGAGTGGGGCC
GAGAGCGCGCGAAGCAGCATCGGCTGCCGAGCAAAAGTAATCAGCCTAGT
GTTTGGCCTATTGCCATTATGGAGGGAAAAGCTGGTATGAGTCTTATTTT
CCCATGGTGGTAAAAGTATTTGTGAAGACAAGGCACATATGTGGAGAGAA
AGTATATATGTGGAGAATAATGAGTTGGCGCATGTTTCAAGTTGAGAGTT
GTATGGTTATCGTGATCCGATTGGTAAGTTGATGTTGGAAGGTGAATGAT
GCGGGTGGTAAATGAAGTCGAGTATGAGTTCAAGTACTGCTGAAGTTTCT
TTGTTGTTGTTGGTTGTTGTTGTAGGATGTGCATATTGTTGTTGTTGTGA
GTTGTGATGGAGTAGCTCAATCGTTCGAAAGTTCAACTTTGGGGGCAAAG
AAGAGGTCGTGGGTTTGAGCCCTTCGAAGAGGTAACTCGCTCTCCTCACG
CGCGCTTCGAAATTTGAGAAGAAGAACGATTGAGAGATTAGCGGGGGAAT
GTCGACGTGAGACGAGAATGGACACGGACCAGGCGGCCGTAGACCCGGAA
ATACGCCACGCCTGACGGCATTATCCCACAAGTATCGACCGGTGCGATCT
CGGCTAACAGCCGCGAAAGTAACACCGCCTGTCAAAGATATGGGGACGAA
CCGGCACCATGAAGAACATGAAGCATGGTGGCTACTACGTAGACAAAAAT
AAATAAATAATAATATTGCTGGTGCGCATTTACTCCCACCAGCAACCCGA
CCTAGTCATAAAACCAAAATCACACCTCCTCATGACGGGCGGCTGCCGGC
ACACTGGCAATATGATACATAATATCAACACGGCCAATCTTGGTTTTACC
GATTCTGGCCACCACGTTAGAGCGGGTGCTCATGTCGATCTTGCTTTGTT
CCTCATTGAGCACATACCTCAAACCAGTTTGGTTTCCTACCTGGTACCGG
GACCTTGGATGTTGAGGTGTCATCTTGGCTGATCAGATCTCTCGGCCTTT
GAAGCCAGGAAGGATGTTTGCCTGTGGCGTTAGACTTGAAGGCGCCTTCA
ACAAGGTGTGTGTAGCGGGCCTGTTGGCCCATCTATGGGCAGCGGGTGTT
AGGTCTAAAGCCCACCAACTCTTTGAAAGCTACTTGTTGAACAGGTTCGT
GGTGGCGAATGGGCAGATCTCCGAGCGAGTCAGCATCAGATCTGGCCCCC
CCTCCTTTTTGACCTGTTTGCCATTTGAATGTTCCACAGCATGTGGGGGA
GGCGCACTGCCTCTTTTATGCTGATGACCTGACATTGCTGAAGGTCATTG
GTATAGGAAAAATCAGCAGGCAGCACAGGACACACAACAGCGGGAGCCCC
GACCAGGACCTCAAGCGCCTTTTTCTGCTTTTTTTTTTTGTAAGGAGGGC
TGCTTCTTGAGTTTTAGTCCAGTAAGTCCTTTGGGCTTAACATCTCCAAC
TCGAAAAACGAAGGACCTGAAAAAGGGCCACATTCCTTGCTACATAGGGG
GGGGTGAGGCCAAAGAGCAGGAAGTGCTTATTGAAATACTACTACGCTTC
CTCACTGACAACAAGGGCAACTGGTCAAAGTTTTCTTGGGCGACGGGTCC
GCTACCTGCCAGCGACTTGAAGCGCTTAGACGACTCACCCCCCTTCTGGA
TGATGATGATTTTATCACTGGATGGTCTTCAAGACCTTTGTGCGGTCCAA
GATCGAAAATGGCTGTCTTGTTTGCTGGGGGGCAGCTAATGGGCACCTCA
GATATCTTGATTCATTCCAGCATATAGTGCTCCCAAGCTTCTTCAGAAGC
CAGAACTAGTTGACCCACCTTTACCCTCGCTTGAAAGTAGAAGACTGGCT
GCTGCAGTGGGTCTTGTGTGCAAACTGCTCGACGGCACCCGCACCAGCTG
CAGCAGGCTCCAATAGGGTGGTTTATTTTAATTTGAAATGAAATTATTCT
GTTTGATCGAGCCAATGATGTGTTGTTGACCAAAAGAAAAATGGCTCGTT
GTAGGACAAAAGTTAAGAGAAATTAAATTAATTGCTATAACTATGTTAAT
TATTCTGAAATGTATCTATGACCAGCCTCACCCAAACCGTAGAAACATTC
TGGGTGCCTTTGGTGTGAAGGGTACTCAGCCTATACTGAGTTGGCAAAGG
GGGGGTCGAATAGGCAGAAGGTGGGGAACCTTGATCAGAAACACGGTCAA
GTGCGTCTCTTGATTGATATGGTGGTGCAGGAGGAGGTCGAGATTGCCCT
TGATGAGCTGGTCGACAAGGTAGAGTGCAATGTGCTTGGTCTACCTCAGC
CGCCAGTACCACTTGAAGTGCGGAGTATGAGGGGTCTTGCAAAAAGGACT
TTCTCATTCTGCCTTAGGTTGTGAGCTGCTAGAAGTCTGTTTCTATAGTA
CAACCTTTACTCAGTTTGAAGATGCCATAGTTTGATGAGTAGTTTGTGTG
TGCTTATTAGGCTTTTTGACTACAGGTTAGTTTTCCCCTAATAACATTTA
TTTTGTAGAAAGGTTTAAGGCCGGTTCTTTTACTTCCTAGGTATATTTCT
TGCAGCCAATGTGGGTTGGTTTTATGTCAAAAAATATAGAAAGTATTAAA
CGTCAAGCTTTAAAAAAAACAGTTGGTAGTTGCAGTACTAATAAGTCCCA
AATTGAACTCCATCGATTTTGGATTTTTGCCATTTTCCTACCCAAAAGTC
CAAAAATTGGCGGGAGCAGAGGGGTTCCGTGTCGGGTGTCGTTTGGGGTG
CCAGGAAATAATTGTTCTTTCTTACACCCAAACGAAGCCTCGCCTGATTA
AAACAAACAATTACACATACGCCTGTAGTATGTGCGATGAGGCCTGGAGA
GCGGGAACGGAAGATGGTGCCAAACGGATCAAGGCGCTTCGAAATGCAGT
CCATAAAAGAGACTGGAGGTTCAGTAATCGTCAGCAATGTCGAAAGATAC
TCGTTCCGATGAAGTTGTCAGAGATCATGGCATCAGTCGACATTGGGTGA
GAAGCCTGCCGGGTGCTAGAGGGGTATCGCCTGAACAAACGTGGGAAAAA
AAAAAAAAAAAAAATGTCACAGAGCAGGGCTTTGCTCCCTTGAAACATAC
AAGAGGTTGCTCAGGGTCAGGCTACCAGGGATATGGCACAACCTAAATCG
AGACGTACTTCAATAATAATGCATCTAGAAGAATTGATTAACAAGACCAT
CAATCAGGGCATAGGATATTCCAAAAGGAACACGTTGACCCAGTCTAATG
CTTCACGGACAACCATCAAAGCTTAAAGGCCAAGGCCAAAATTACTGCTA
TAGCGCATGAAATACAACATCATGAAACTATAATGTGTGATTCCAATATT
CTAAAAGAAGAATTCATACCAATTAGGAAGCAGCTTCACAGTCAGATGCA
GCTGGGTGGTAGCAGCAGTAGATAAGTTCTGGATTGTCATTTTTTACTTC
ATGTTTTCCCCCTACGTTTTAGCATTAAAGTGACAAAATTGTTTGTTATT
TGATTATAACTGTTGCTACCTCTATCCATTGAATGTTTCAAAATTGTTGT
GAGGTGTTGGATTTAACAGAAAAGCCGTTTCCATCAGTGAATATATAAAG
CTCCACATTACCAAAGAGGCGGTATGTCAAAGCTTTTCAAATCATGATAA
GATCTGACGTGGACAGCATTGCTTCTGGCATACCACCAGCCTAGGCCGGT
GGCTGGCCTGTGTCAACACGCCTCGTCAGTAATGATGAACCGGCTTCATA
TTGATTGATGAGACCACCAGCAGGACTATGGTATGGGCAGAGCGACCTTG
GCCCAGTCCAATGCTTTGAATTTGAAGGCCACGGCCAAAATACTGCTATA
TATATAGCGCATGAAGAAATACATATACATACATATTAAAATACCGTTGT
CTGAAGGAGATGCTTTAACTTGACCTGGTATTCAACTCATGACTTAACGT
CTTGTACCTGTGGTACTAATATAGTTCAGGCATCCCAACTTACATTACCA
TGTGCGGTAAACAATAGAAGGGCAGATATTTTGAATACACTACATCACAT
CCACCAAACACCTTGATGGAGACGCGTTCATTCCACTACAGAAGTACCAT
TCCGCCTTTGGGTGGCAAAACAAGGAGTGGAAACAAAAACATTGCTTAGT
AGGGTTTCTTAATCAAACGTTGGCAACTGCTGCAAAACACTGCTGCTTCT
CTGCTGTCCCCAGAGATGCAATTGTTCGACATTCCCCGAGACGAACAAAT
CAGGCCGTGCAACCTCCCAAGCACTTCGCCAGCCCCCTTCTTCGCCGGCA
AGCTGGGGCAGCAAAGTGGCCCTGCCGCCCCGCCCCCTTCTCGCTGCCCC
CCCCCGCCCTTGCCCGCAGAAATCGCGGAAGCCGGCCGTCGACGACGGTC
CCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1192:327421..333774-

>mRNA_H-akashiwo_Contig1192.10.1 ID=mRNA_H-akashiwo_Contig1192.10.1|Name=mRNA_H-akashiwo_Contig1192.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig1192:327421..333774- (Heterosigma akashiwo CCMP452)
CTCATATATGCAGACTTCACTCCATTTGAAGATGACGATGATAGTATTAA
TTTTTATGATTCCAACATGGGTCCGGTGCATTCCAAAAAGCGACGGCTCA
AATTTCCTAGCCGAAAGAAATCGCGGAAGCCGGCCGTCGACGACGGTCCC
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