mRNA_H-akashiwo_Contig1191.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1191.9.1
Unique NamemRNA_H-akashiwo_Contig1191.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1191.9.1 vs. uniprot
Match: A0A7S3YAE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAE0_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 4.680e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 SDGIQDETRQQQDFGPKANETRSAAEADPSLNSSSRRRRRSSVRLKTIESAEQS 162
            SDGIQDETRQQQDFGPKANETRSAAEADPSLNSSSRRRRRSSVRLKTIESAEQS
Sbjct:   35 SDGIQDETRQQQDFGPKANETRSAAEADPSLNSSSRRRRRSSVRLKTIESAEQS 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1191.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YAE0_HETAK4.680e-24100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1191contigH-akashiwo_Contig1191:326143..326551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons3
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.2465386-CDS-H-akashiwo_Contig1191:326144..3262201681387112.2465386-CDS-H-akashiwo_Contig1191:326144..326220Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1191 326145..326220 -
1681387112.2612035-CDS-H-akashiwo_Contig1191:326340..3264111681387112.2612035-CDS-H-akashiwo_Contig1191:326340..326411Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1191 326341..326411 -
1681387112.27159-CDS-H-akashiwo_Contig1191:326515..3265511681387112.27159-CDS-H-akashiwo_Contig1191:326515..326551Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1191 326516..326551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1191.9.1prot_H-akashiwo_Contig1191.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1191 326145..326551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1191.9.1

>prot_H-akashiwo_Contig1191.9.1 ID=prot_H-akashiwo_Contig1191.9.1|Name=mRNA_H-akashiwo_Contig1191.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
SDGIQDETRQQQDFGPKANETRSAAEADPSLNSSSRRRRRSSVRLKTIES
AEQSLSTQLCL
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mRNA from alignment at H-akashiwo_Contig1191:326143..326551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1191.9.1 ID=mRNA_H-akashiwo_Contig1191.9.1|Name=mRNA_H-akashiwo_Contig1191.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=409bp|location=Sequence derived from alignment at H-akashiwo_Contig1191:326143..326551- (Heterosigma akashiwo CCMP452)
TCAGATGGAATCCAAGATGAAACTCGTCAGCAGCAGGTTCGTTTTTCGTT
TTCAAGGCTTTGGGGGTGATTCAAATCCTGCCGGTGCTGGTTTTACGCTA
CTTGTGAACTCTCAAATGTTTTCATTCCACTCCCCACCAGGACTTCGGGC
CAAAGGCTAACGAAACGCGATCAGCTGCTGAGGCAGACCCGAGCCTCAAT
TCCTCTTCGAGGTAGAATCAAATCCAAATAGTCCTTTTTTTTGTCTGGTT
CATTTTGTTGGAACTAAAATTAACAGGTAACGCCCGTAAAGGTTTTCTCG
CACACGTCAATATTCCATTCTCATAATGAAGGCGCCGGCGAAGATCTTCA
GTTCGGTTAAAAACAATTGAATCAGCAGAGCAATCCCTTTCAACACAACT
GTGTCTTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1191:326143..326551-

>mRNA_H-akashiwo_Contig1191.9.1 ID=mRNA_H-akashiwo_Contig1191.9.1|Name=mRNA_H-akashiwo_Contig1191.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig1191:326143..326551- (Heterosigma akashiwo CCMP452)
TCAGATGGAATCCAAGATGAAACTCGTCAGCAGCAGGACTTCGGGCCAAA
GGCTAACGAAACGCGATCAGCTGCTGAGGCAGACCCGAGCCTCAATTCCT
CTTCGAGGCGCCGGCGAAGATCTTCAGTTCGGTTAAAAACAATTGAATCA
GCAGAGCAATCCCTTTCAACACAACTGTGTCTT
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