mRNA_H-akashiwo_Contig1191.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1191.4.1
Unique NamemRNA_H-akashiwo_Contig1191.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1191.4.1 vs. uniprot
Match: A0A6T5P7C3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5P7C3_HETAK)

HSP 1 Score: 433 bits (1114), Expect = 9.790e-152
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 3 
Query:   30 MIMIRAAFLALFCAVAVQFIHAAVNKPTVKVVVTDTNLNSFDDLDVSANYEVDVNDDVVVGVDYEMLKNKYGPSNIYVQAKQDDINVEANYDTGSKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDQTTELAPTFNVADKTVDVEVRQSLGDKVNALVSFNQAFQNPTIEAACEIDEKRTFTPKLDVDNKKLTYSYEQQLENGKITADVDPADKLSVSWEDSGSNGDWTATADVGLKGGNPVGFSFTRNFKF 809
            MIMIRAAFLALFCAVAVQFIHAAVNKPTVKVVVTDTNLNSFDDLDVSANYEVDVNDDVVVGVDYEMLKNKYGPSNIYVQAKQDDINVEANYDTGSKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDQTTELAPTFNVADKTVDVEVRQSLGDKVNALVSFNQAFQNPTIEAACEIDEKRTFTPKLDVDNKKLTYSYEQQLENGKITADVDPADKLSVSWEDSGSNGDWTATADVGLKGGNPVGFSFTRNFKF
Sbjct:    1 MIMIRAAFLALFCAVAVQFIHAAVNKPTVKVVVTDTNLNSFDDLDVSANYEVDVNDDVVVGVDYEMLKNKYGPSNIYVQAKQDDINVEANYDTGSKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDQTTELAPTFNVADKTVDVEVRQSLGDKVNALVSFNQAFQNPTIEAACEIDEKRTFTPKLDVDNKKLTYSYEQQLENGKITADVDPADKLSVSWEDSGSNGDWTATADVGLKGGNPVGFSFTRNFKF 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1191.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6T5P7C3_HETAK9.790e-152100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1191contigH-akashiwo_Contig1191:97229..98094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size866
Hectar predicted targeting categorysignal peptide
Exons1
Cds size783
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.3004735-UTR-H-akashiwo_Contig1191:97228..972571681387112.3004735-UTR-H-akashiwo_Contig1191:97228..97257Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1191 97229..97257 +
1681387112.3214421-UTR-H-akashiwo_Contig1191:98040..980941681387112.3214421-UTR-H-akashiwo_Contig1191:98040..98094Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1191 98041..98094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.3113112-CDS-H-akashiwo_Contig1191:97257..980401681387112.3113112-CDS-H-akashiwo_Contig1191:97257..98040Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1191 97258..98040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1191.4.1prot_H-akashiwo_Contig1191.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1191 97258..98040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1191.4.1

>prot_H-akashiwo_Contig1191.4.1 ID=prot_H-akashiwo_Contig1191.4.1|Name=mRNA_H-akashiwo_Contig1191.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=261bp
MIMIRAAFLALFCAVAVQFIHAAVNKPTVKVVVTDTNLNSFDDLDVSANY
EVDVNDDVVVGVDYEMLKNKYGPSNIYVQAKQDDINVEANYDTGSKEVSV
EANYNLDGTNIGVSFKQMLEDVKVKAQRSMELFDQTTELAPTFNVADKTV
DVEVRQSLGDKVNALVSFNQAFQNPTIEAACEIDEKRTFTPKLDVDNKKL
TYSYEQQLENGKITADVDPADKLSVSWEDSGSNGDWTATADVGLKGGNPV
GFSFTRNFKF*
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mRNA from alignment at H-akashiwo_Contig1191:97229..98094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1191.4.1 ID=mRNA_H-akashiwo_Contig1191.4.1|Name=mRNA_H-akashiwo_Contig1191.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=866bp|location=Sequence derived from alignment at H-akashiwo_Contig1191:97229..98094+ (Heterosigma akashiwo CCMP452)
AGTCTATATACTGAAAATCAAACTCAACAATGATCATGATCAGAGCCGCT
TTCCTTGCTCTCTTCTGCGCTGTGGCTGTGCAGTTCATCCATGCTGCTGT
CAACAAGCCCACCGTAAAGGTCGTTGTGACTGACACTAACTTGAACTCAT
TTGACGACCTGGACGTGTCTGCCAACTATGAGGTGGACGTCAATGACGAC
GTGGTGGTCGGTGTTGACTACGAGATGCTCAAGAATAAGTACGGTCCTTC
CAATATCTACGTACAGGCAAAGCAGGACGATATCAATGTGGAGGCCAACT
ACGACACAGGAAGCAAGGAGGTTTCTGTGGAGGCCAACTACAACCTTGAT
GGCACCAACATCGGCGTGTCTTTCAAGCAGATGCTCGAAGATGTGAAGGT
GAAGGCACAGCGCTCCATGGAACTCTTTGATCAGACGACTGAGCTGGCCC
CTACTTTCAACGTGGCCGACAAGACTGTCGATGTGGAAGTCCGCCAGTCC
CTTGGAGACAAGGTGAACGCGCTGGTGAGCTTCAACCAGGCCTTCCAGAA
CCCCACGATCGAGGCTGCATGCGAAATTGACGAGAAGCGGACATTCACAC
CGAAGCTCGACGTCGATAACAAGAAGCTGACATACTCATACGAGCAGCAG
CTGGAGAATGGCAAAATCACTGCTGACGTGGACCCAGCTGATAAGCTCTC
CGTCTCTTGGGAGGATTCCGGCTCAAATGGCGACTGGACCGCCACAGCTG
ATGTCGGCCTTAAGGGTGGCAACCCTGTGGGCTTCTCCTTCACTCGCAAC
TTCAAGTTTTAGATATTACTGGCCTGTTGGATTACTTGTTACAGCAGCCA
GTCCTTTTGTGTGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1191:97229..98094+

>mRNA_H-akashiwo_Contig1191.4.1 ID=mRNA_H-akashiwo_Contig1191.4.1|Name=mRNA_H-akashiwo_Contig1191.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=783bp|location=Sequence derived from alignment at H-akashiwo_Contig1191:97229..98094+ (Heterosigma akashiwo CCMP452)
ATGATCATGATCAGAGCCGCTTTCCTTGCTCTCTTCTGCGCTGTGGCTGT
GCAGTTCATCCATGCTGCTGTCAACAAGCCCACCGTAAAGGTCGTTGTGA
CTGACACTAACTTGAACTCATTTGACGACCTGGACGTGTCTGCCAACTAT
GAGGTGGACGTCAATGACGACGTGGTGGTCGGTGTTGACTACGAGATGCT
CAAGAATAAGTACGGTCCTTCCAATATCTACGTACAGGCAAAGCAGGACG
ATATCAATGTGGAGGCCAACTACGACACAGGAAGCAAGGAGGTTTCTGTG
GAGGCCAACTACAACCTTGATGGCACCAACATCGGCGTGTCTTTCAAGCA
GATGCTCGAAGATGTGAAGGTGAAGGCACAGCGCTCCATGGAACTCTTTG
ATCAGACGACTGAGCTGGCCCCTACTTTCAACGTGGCCGACAAGACTGTC
GATGTGGAAGTCCGCCAGTCCCTTGGAGACAAGGTGAACGCGCTGGTGAG
CTTCAACCAGGCCTTCCAGAACCCCACGATCGAGGCTGCATGCGAAATTG
ACGAGAAGCGGACATTCACACCGAAGCTCGACGTCGATAACAAGAAGCTG
ACATACTCATACGAGCAGCAGCTGGAGAATGGCAAAATCACTGCTGACGT
GGACCCAGCTGATAAGCTCTCCGTCTCTTGGGAGGATTCCGGCTCAAATG
GCGACTGGACCGCCACAGCTGATGTCGGCCTTAAGGGTGGCAACCCTGTG
GGCTTCTCCTTCACTCGCAACTTCAAGTTTTAG
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