mRNA_H-akashiwo_Contig1191.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1191.10.1
Unique NamemRNA_H-akashiwo_Contig1191.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A7S3XZI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZI8_HETAK)

HSP 1 Score: 143 bits (360), Expect = 2.890e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF
Sbjct:  135 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 202
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BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: T1D1K3_SILLA (N-acetylornithine deacetylase-like protein (Fragment) n=1 Tax=Silene latifolia TaxID=37657 RepID=T1D1K3_SILLA)

HSP 1 Score: 94.0 bits (232), Expect = 3.090e-23
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+TE M+ L   +P L  TV  + IANEEN  I  VGVDA+ K G LDCL+GGPLF
Sbjct:   46 GRGTTDCLGHVALVTELMKKLAETKPKLKSTVVAVFIANEENSAITGVGVDALAKDGLLDCLKGGPLF 113
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BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A1Q3BM34_CEPFO (Peptidase_M20 domain-containing protein/M20_dimer domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BM34_CEPFO)

HSP 1 Score: 94.7 bits (234), Expect = 3.080e-21
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+TE MR LG  +P L  TV  + IANEEN  I  VGVDA+ KAG LD L+GGPLF
Sbjct:  126 GRGTTDCLGHVALVTELMRRLGETKPKLKSTVVAVFIANEENSSITGVGVDALAKAGLLDKLKGGPLF 193
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BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A7S2XXJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXJ8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.300e-21
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVALLT+F+  LG  +P L RT+ V+ IANEE+     VG+DA+HKAG LD L+ GP++
Sbjct:    6 GRGTTDCLGHVALLTDFLHTLGKTQPQLERTIIVVFIANEEDSSRQGVGIDALHKAGHLDQLKNGPVY 73
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BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: UPI0009F5EC31 (acetylornithine deacetylase-like n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F5EC31)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-20
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+TE MR LG  RPPL  TV  + IANEEN  +  +GVD + K G LD L+ GPLF
Sbjct:  128 GRGTTDCLGHVALVTELMRKLGQVRPPLKNTVVAVFIANEENSSVLGIGVDELVKDGLLDKLKQGPLF 195
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BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A2I0AX13_9ASPA (IAA-amino acid hydrolase ILR1-like 1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AX13_9ASPA)

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-20
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+TE MR LG  RPPL  TV  + IANEEN  +  VGVDA+ K G LD L+ GPLF
Sbjct:  125 GRGTTDCLGHVALVTELMRKLGEVRPPLKNTVVAVFIANEENSSVLGVGVDALMKDGLLDKLKHGPLF 192
[Close]
BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A061G362_THECC (Peptidase M20/M25/M40 family protein isoform 3 (Fragment) n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061G362_THECC)

HSP 1 Score: 92.0 bits (227), Expect = 1.910e-20
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+TE MR LG  +P L  TV  + IANEEN  I  VGVDA+ K G LD L+GGPLF
Sbjct:   91 GRGTTDCLGHVALVTELMRKLGERKPKLKSTVVAVFIANEENSAITGVGVDALVKDGLLDKLKGGPLF 158
[Close]
BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: UPI00092EE4AF (acetylornithine deacetylase-like n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EE4AF)

HSP 1 Score: 89.4 bits (220), Expect = 3.220e-20
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+TE MR LG  +P L  TV  + IANEEN  I  VGVDA+ K G LD L+ GPLF
Sbjct:  124 GRGTTDCLGHVALVTELMRKLGQTKPKLKSTVVAVFIANEENSAISGVGVDALVKDGLLDNLKQGPLF 191
[Close]
BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A803L5Z3_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803L5Z3_CHEQI)

HSP 1 Score: 90.9 bits (224), Expect = 4.450e-20
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+ E M+ LG A+P L  TV  + IANEEN  I  +GVDA+ K G LD L+GGPLF
Sbjct:  127 GRGTTDCLGHVALVAELMKKLGEAKPKLKSTVVAVFIANEENSAITGIGVDALGKDGLLDKLKGGPLF 194
[Close]
BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Match: A0A426X2W0_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426X2W0_ENSVE)

HSP 1 Score: 88.6 bits (218), Expect = 4.990e-20
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   10 GRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPDVGVDAVHKAGRLDCLRGGPLF 213
            GRGTTDCLGHVAL+T+ MR LG  +P L  TV  + IANEEN  +  VGVDA+ K G LD L+ GPLF
Sbjct:  120 GRGTTDCLGHVALVTQLMRRLGETKPKLKNTVVAVFIANEENSSVSGVGVDALVKDGLLDKLKAGPLF 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1191.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZI8_HETAK2.890e-39100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
T1D1K3_SILLA3.090e-2364.71N-acetylornithine deacetylase-like protein (Fragme... [more]
A0A1Q3BM34_CEPFO3.080e-2167.65Peptidase_M20 domain-containing protein/M20_dimer ... [more]
A0A7S2XXJ8_9STRA6.300e-2160.29Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
UPI0009F5EC311.350e-2063.24acetylornithine deacetylase-like n=1 Tax=Dendrobiu... [more]
A0A2I0AX13_9ASPA1.500e-2066.18IAA-amino acid hydrolase ILR1-like 1 n=1 Tax=Apost... [more]
A0A061G362_THECC1.910e-2066.18Peptidase M20/M25/M40 family protein isoform 3 (Fr... [more]
UPI00092EE4AF3.220e-2064.71acetylornithine deacetylase-like n=1 Tax=Lupinus a... [more]
A0A803L5Z3_CHEQI4.450e-2063.24Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A426X2W0_ENSVE4.990e-2061.76Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1191contigH-akashiwo_Contig1191:337567..339789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3641.EOY24014
PFAMsM20_dimer,Peptidase_M20,Peptidase_M28
Model size214
Max annot lvl35493|Streptophyta
KEGG rclassRC00064,RC00300
KEGG koko:K01438
KEGG ReactionR00669,R09107
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028,M00845
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.65e-21
EggNOG OGsCOG0624@1|root,KOG2276@2759|Eukaryota,37MXI@33090|Viridiplantae,3G91F@35493|Streptophyta
Ec32 ortholog descriptionPeptidase M20, dimerisation domain
Ec32 orthologEc-12_000150.1
EC3.5.1.16
Descriptionacetylornithine
Cds size213
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.7112417-CDS-H-akashiwo_Contig1191:337566..3376311681387112.7112417-CDS-H-akashiwo_Contig1191:337566..337631Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1191 337567..337631 +
1681387112.7228637-CDS-H-akashiwo_Contig1191:339640..3397881681387112.7228637-CDS-H-akashiwo_Contig1191:339640..339788Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1191 339641..339788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1191.10.1prot_H-akashiwo_Contig1191.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1191 337567..339788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1191.10.1

>prot_H-akashiwo_Contig1191.10.1 ID=prot_H-akashiwo_Contig1191.10.1|Name=mRNA_H-akashiwo_Contig1191.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
PAVGRGTTDCLGHVALLTEFMRALGAARPPLARTVRVLLIANEENGLIPD
VGVDAVHKAGRLDCLRGGPLF
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mRNA from alignment at H-akashiwo_Contig1191:337567..339789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1191.10.1 ID=mRNA_H-akashiwo_Contig1191.10.1|Name=mRNA_H-akashiwo_Contig1191.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2223bp|location=Sequence derived from alignment at H-akashiwo_Contig1191:337567..339789+ (Heterosigma akashiwo CCMP452)
CCGGCTGTCGGGCGCGGGACCACGGACTGCCTCGGCCACGTGGCCCTGCT
CACCGAGTTCATGCGGTGGGGGCACGGCACAGCACGGTGCGGGGCGGGGG
GCTGGGCGGGGCCCGAAGAAAAGAGGAGTGCTGGAGGGATGGGAGGGAGC
ACCCCGGGTCGGAAGAGGGTTTGGACTTTGACTTTCATGGCGATTCAGCG
CGGAAAAGGTGGTATGGCCATTGGCTGGATTTCCGGAAGAGGCAAAGCCT
CCAGCCAGCTGTGGTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGA
ACGGGAATGACAACACAGCAGCAGCAGCACAGCTGATGATTATCATCACA
AAGAAGTATATAGTACATATAATAATATATATATTTATATAATATGCAAA
CACAAACAAGTATAGAACTGTGACTAGCTATGACAAACTGTTCTTCTTCA
GAGAAGAAGAATCTTAAACTGTCACATTGAGAATATAAACAGTCCGGCTT
ATGCAACTGCAAATAGAACTGAAAGAACCAAAGCCAGAGAAGAATAAAAT
CGTCATGAACCAACATATAGAACACAATCAGTCGAAGCACAAGTTGAGTC
TGCATCGCCCAGCCTACCCAAAATGGTTATGAATAGATCAAACACAGGTG
GAACCATCTAGGCGTTTATTGCTGAATAGTTCTGTGTAGAGCAATGTTGC
TTTCTGATGAGAACACATTGAGGAAACTTGCAACCAGTGATCAAGATCGA
GAAAAAGATTCTTGGAACACAGTTGAGCTTTGCTTGGAGTAGAAGAATCA
AGAAGAGTCGGCCCTGGTATCAGTGCTTGAGTCGGGAATGTAAATATTTG
ACAGGGTGGTGAGTGCAGTATCTTGGAAGATGGACTTCGAAAGTCGTACC
TAACATCAAATGCCGCATAATATCTGCCGGGGCCCTCTTATCCACGGAGG
ACCACATTGTGCTGTGACCGACCTGGCAGCAAAGTTTTGTTCATCATCAG
TTGACCAGTCATCAATTAATGATAATGACAAAAAGAGCGGAAGCAACAAA
GGGCGGGAACGAGTACGTGCACCATTGACCTTGAAAGAAACAATGTGATC
AGTAGTTATAGTCCATTGATAAACAGTGTATAAATAGAATTTTGCCAGGC
CGATGATTCAAAACACAGCAGAACCACAAAAAAACAACCACGAGGCGACT
CGGTCGGATCACAGGGCAATGCGGCCCACTGTGAATTGCAGAGGTCCCCC
CTCATACGGTTAGAGTGAGTGGTCCATTCGTGTACCGACCGGAAGAGGTG
CGACGAGGTCGATGCATCCGCCAGCGGGGCGGTCGGATCACAGGGCACAT
CTGGCCCACTGTGAATCGCAGAGAGGTCCCCCCTCATACGGTTAGAGTGA
GTGGTCCATTCGTGTACCGACCGGAAGAGGTGCGACGAGGCCGATGCATC
CGCCAGCGGGGGCGGTCGGATCACAGGGCAATACGGCCCACTGTGAATCG
CAGAGGTCCCCCCTCATACGGTTAGAGTGAGTGGTCCATTCGTGTACCGA
CCGGAAGAGGTGCGACGAGGCGATGCATCCGCCAGCGGGGCGGTCGGATC
ACAGGCAATCTGCCCACTGTGAATCGCAGAGGTCCCCCCTCATACGGTTA
GAGTGAGTGGTCCATTCGTGTACCGACCGGAAGAGGTGCGGCGAGGCCGA
TGCATCCGCCAGCGGGGCGGTCGGATCACAGGGCAATGCGGCCCACTGTG
AATCGCAGAGTCCCCCCCCTCATACGGTTAGAGTGAGTGGTCCATTGTGT
ACCGACCGGAAGAGGTGCGACGAGGCCGATGCATCCGCCAGCGGGGGCGG
TCGGATCACAGGGCAATGCGGCCCACTGTGAATCGCAGAGGTCCCCCCTC
ATACGGTTAGAGTGAGTGGTCCATTCGTGTACCGACCGGAAGAGGTGCGG
CGAGGCCGATGCATCCGCCAGCGGGGGCGGTCGGATCACAGGGCAATGCG
GCCCACTGTGAATCGTAGAGGTCCCCCCTCATACGATTAGAGCGAGTGGT
TCATTTGTTCACCGCGCCCCCCAGGGCGCTGGGCGCGGCGCGGCCCCCGC
TGGCGCGCACGGTGCGGGTGCTGCTCATCGCGAACGAGGAGAACGGGCTG
ATCCCGGACGTGGGCGTGGACGCTGTGCACAAGGCCGGCCGCCTGGACTG
CCTGCGCGGCGGGCCGCTCTTCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1191:337567..339789+

>mRNA_H-akashiwo_Contig1191.10.1 ID=mRNA_H-akashiwo_Contig1191.10.1|Name=mRNA_H-akashiwo_Contig1191.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig1191:337567..339789+ (Heterosigma akashiwo CCMP452)
CCGGCTGTCGGGCGCGGGACCACGGACTGCCTCGGCCACGTGGCCCTGCT
CACCGAGTTCATGCGGGCGCTGGGCGCGGCGCGGCCCCCGCTGGCGCGCA
CGGTGCGGGTGCTGCTCATCGCGAACGAGGAGAACGGGCTGATCCCGGAC
GTGGGCGTGGACGCTGTGCACAAGGCCGGCCGCCTGGACTGCCTGCGCGG
CGGGCCGCTCTTC
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