mRNA_H-akashiwo_Contig1190.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1190.9.1
Unique NamemRNA_H-akashiwo_Contig1190.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 311 bits (796), Expect = 3.240e-100
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 1
Query:    1 VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSRL 456
            VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAY SRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARW MTLMEFMYNTQYRKGKLMAPADALSRL
Sbjct:  363 VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWLMTLMEFMYNTQYRKGKLMAPADALSRL 514          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 285 bits (728), Expect = 3.930e-92
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 1
Query:    1 VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYR 414
            VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAY SRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARW MTLMEFMYNTQYR
Sbjct:  363 VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWLMTLMEFMYNTQYR 500          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A8J6LJE6_TENMO (RT_RNaseH_2 domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LJE6_TENMO)

HSP 1 Score: 158 bits (399), Expect = 8.110e-46
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    7 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSRL 456
            W  + + AFQ+IKD+L SAPVL  P + KPF+++TDAS TGLGA+L Q      R IAY SR  +  E NYS TE ECL V++AL++FR YV G  FT+VTDH SL  L R+K+P G+ ARW + L +F ++  +RKGKL    DALSRL
Sbjct:   19 WTPEAQEAFQKIKDALVSAPVLSSPDFSKPFVIQTDASDTGLGAVLTQDLDGDERVIAYASRSLTKAERNYSVTERECLAVLFALEKFRPYVEGTHFTIVTDHYSLLWLNRMKDPAGKLARWSVKLNQFSFDLVHRKGKLNVVPDALSRL 168          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A8J6HMZ1_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HMZ1_TENMO)

HSP 1 Score: 157 bits (398), Expect = 4.820e-43
Identity = 80/150 (53.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    7 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSRL 456
            W  + + AFQ+IKD+L SAPVL  P + KPF+++TDAS TGLGA+L Q      R IAY SR  +  E NYS TE ECL V++AL++FR YV G  FT+VTDH SL  L R+K+P G+ ARW + L +F +   +RKGKL    DALSRL
Sbjct:   19 WTPEAQEAFQKIKDALVSAPVLSSPDFSKPFVIQTDASDTGLGAVLTQDLDGDERVIAYASRSLTKAERNYSVTERECLAVLFALEKFRPYVEGTHFTIVTDHYSLLWLNRMKDPAGKLARWSVKLNQFSFELVHRKGKLNVVPDALSRL 168          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A8J6HPD2_TENMO (RNA-directed DNA polymerase n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPD2_TENMO)

HSP 1 Score: 158 bits (400), Expect = 2.630e-42
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    7 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSRL 456
            W  + + AFQ+IKD+L SAPVL  P + KPF+++TDAS TGLGA+L Q      R IAY SR  +  E NYS TE ECL V++AL++FR YV G  FT+VTDH SL  L R+K+P G+ ARW + L +F ++  +RKGKL    DALSRL
Sbjct:   52 WTPEAQEAFQKIKDALVSAPVLSSPDFSKPFVIQTDASNTGLGAVLTQDLDGDERVIAYASRSLTKAERNYSVTERECLAVLFALEKFRPYVEGTHFTIVTDHYSLLWLNRMKDPAGKLARWSVKLNQFSFDLVHRKGKLNVVPDALSRL 201          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A8J6H9C8_TENMO (RNA-directed DNA polymerase n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H9C8_TENMO)

HSP 1 Score: 156 bits (395), Expect = 2.330e-41
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    7 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSRL 456
            W  + + AFQ+IKD+L SAPVL  P + KPF+++TDAS TGLGA+L Q      R IAY SR  +  E NYS T+ ECL V++AL++FR YV G  FT+VTDH SL  L R+K+P G+ ARW + L +F ++  +RKGKL    DALSRL
Sbjct:  787 WTPEAQEAFQKIKDALVSAPVLSSPDFSKPFVIQTDASDTGLGAVLTQDLDGDERVIAYASRSLTKAERNYSVTKRECLAVLFALEKFRPYVEGTHFTIVTDHYSLLWLNRMKDPAGKLARWSVKLNQFSFDLVHRKGKLNVVPDALSRL 936          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 149 bits (376), Expect = 2.580e-41
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGRE 294
            V W DDCEWAFQ +KD+LT+AP+L++P ++K F +ETDASK GLGAIL Q T  G +P+AY SR+C+  EANYSATELECLGVI+ +QQFRCY++GR+
Sbjct:  225 VEWTDDCEWAFQNLKDTLTTAPILIFPNFNKEFTIETDASKHGLGAILSQDTTEGRKPVAYASRVCNSAEANYSATELECLGVIFGIQQFRCYILGRQ 322          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A0J7JYT7_LASNI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JYT7_LASNI)

HSP 1 Score: 153 bits (387), Expect = 4.470e-41
Identity = 74/150 (49.33%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    4 LWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSR 453
            +W +    AF  +K++LTSAPVL  P +++PF ++TDAS  GLGA+L QQ   G R IAY SR  +P E NYSATELECL V++ +++ R Y+ G  FT+VTDH+SL  L+R+++P+GR +RW   L  + +  +YR+G L   ADALSR
Sbjct:   20 VWTEAANTAFCRLKEALTSAPVLACPDFNQPFTLQTDASAHGLGAVLTQQLDEGERVIAYASRTLNPAERNYSATELECLAVVWGIRRMRDYLEGYRFTVVTDHQSLRWLQRLESPSGRLSRWLFELQSYDFEIKYRRGALNQVADALSR 169          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A6A3QF82_9STRA (RT_RNaseH domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QF82_9STRA)

HSP 1 Score: 144 bits (363), Expect = 9.700e-41
Identity = 74/149 (49.66%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    7 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSR 453
            W    E AF   K  L++ PVL+YP +D PF + T+ASK GLGA+L Q   RG +P+AY S++ SP  ANYS +ELECL V++A++ FR ++ GR FT+VTDH +L+ L   K P GR  RW +TL E+ ++  YR GK    ADALSR
Sbjct:   16 WGAAQEEAFTWAKAWLSTKPVLVYPNYDLPFNLTTEASKAGLGAVLSQDQGRGDQPVAYASKVNSPAVANYSISELECLAVVWAVRLFRSHLYGRRFTIVTDHVALKWLMTTKEPAGRLPRWALTLQEYDFDIVYRPGKENHVADALSR 164          
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Match: A0A6H5J3R6_9HYME (RNA-directed DNA polymerase n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J3R6_9HYME)

HSP 1 Score: 146 bits (368), Expect = 2.640e-40
Identity = 71/150 (47.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    4 LWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALSR 453
            +W  D E AF  +K SL+ APVL+ P +DK F ++TDAS   +GA+L Q+ + G  P+ Y SR+ +  E NY+ TE ECL V++A+++FR YV G  F +VTDH++L  L+  K+P GR ARW + LME+ +   YRKG L    DALSR
Sbjct:   30 VWGSDQEQAFATLKQSLSEAPVLVRPDFDKEFAIQTDASDYAIGAVLTQEREDGEHPVYYISRVLTSAERNYTVTEKECLAVLWAIEKFRPYVEGYHFRVVTDHRALSWLRNFKDPQGRVARWALKLMEYDFEIVYRKGSLHYVPDALSR 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1190.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XV63_HETAK3.240e-10098.68Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XVA0_HETAK3.930e-9298.55Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A8J6LJE6_TENMO8.110e-4653.33RT_RNaseH_2 domain-containing protein n=1 Tax=Tene... [more]
A0A8J6HMZ1_TENMO4.820e-4353.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6HPD2_TENMO2.630e-4253.33RNA-directed DNA polymerase n=1 Tax=Tenebrio molit... [more]
A0A8J6H9C8_TENMO2.330e-4152.67RNA-directed DNA polymerase n=1 Tax=Tenebrio molit... [more]
A0A7S3XU57_HETAK2.580e-4165.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0J7JYT7_LASNI4.470e-4149.33RNA-directed DNA polymerase (Fragment) n=1 Tax=Las... [more]
A0A6A3QF82_9STRA9.700e-4149.66RT_RNaseH domain-containing protein n=1 Tax=Phytop... [more]
A0A6H5J3R6_9HYME2.640e-4047.33RNA-directed DNA polymerase n=1 Tax=Trichogramma b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1190contigH-akashiwo_Contig1190:131236..131691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7070.TC001846-PA
PFAMsRVT_1,Retrotrans_gag,rve,zf-CCHC,zf-H2C2
Model size456
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.29e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda
DescriptionK02A2.6-like
Cds size456
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.1315885-CDS-H-akashiwo_Contig1190:131235..1316911681387112.1315885-CDS-H-akashiwo_Contig1190:131235..131691Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 131236..131691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1190.9.1prot_H-akashiwo_Contig1190.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1190 131236..131691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1190.9.1

>prot_H-akashiwo_Contig1190.9.1 ID=prot_H-akashiwo_Contig1190.9.1|Name=mRNA_H-akashiwo_Contig1190.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=152bp
VLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQ
QTQRGTRPIAYTSRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFT
LVTDHKSLEDLKRIKNPTGRRARWFMTLMEFMYNTQYRKGKLMAPADALS
RL
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mRNA from alignment at H-akashiwo_Contig1190:131236..131691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1190.9.1 ID=mRNA_H-akashiwo_Contig1190.9.1|Name=mRNA_H-akashiwo_Contig1190.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:131236..131691- (Heterosigma akashiwo CCMP452)
GTACTTTGGGACGACGATTGTGAATGGGCATTTCAGGAAATCAAGGACAG TCTGACGTCAGCACCGGTGCTAATGTACCCGAGGTGGGACAAACCATTCA TAGTGGAAACAGACGCTTCAAAAACAGGACTGGGAGCCATTCTACTACAG CAGACACAACGAGGCACAAGACCTATCGCCTACACCAGCAGACTATGCAG CCCTACGGAAGCAAATTACAGTGCGACGGAACTGGAATGTTTGGGAGTAA TTTACGCTCTCCAACAGTTTCGTTGTTATGTAATGGGGAGAGAGTTTACC TTGGTTACAGACCATAAGTCATTAGAGGATTTGAAAAGGATCAAGAATCC GACAGGAAGAAGGGCAAGATGGTTTATGACATTGATGGAGTTCATGTACA ATACTCAGTACAGGAAAGGGAAGCTGATGGCACCAGCAGATGCGCTATCA AGACTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1190:131236..131691-

>mRNA_H-akashiwo_Contig1190.9.1 ID=mRNA_H-akashiwo_Contig1190.9.1|Name=mRNA_H-akashiwo_Contig1190.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:131236..131691- (Heterosigma akashiwo CCMP452)
GTACTTTGGGACGACGATTGTGAATGGGCATTTCAGGAAATCAAGGACAG
TCTGACGTCAGCACCGGTGCTAATGTACCCGAGGTGGGACAAACCATTCA
TAGTGGAAACAGACGCTTCAAAAACAGGACTGGGAGCCATTCTACTACAG
CAGACACAACGAGGCACAAGACCTATCGCCTACACCAGCAGACTATGCAG
CCCTACGGAAGCAAATTACAGTGCGACGGAACTGGAATGTTTGGGAGTAA
TTTACGCTCTCCAACAGTTTCGTTGTTATGTAATGGGGAGAGAGTTTACC
TTGGTTACAGACCATAAGTCATTAGAGGATTTGAAAAGGATCAAGAATCC
GACAGGAAGAAGGGCAAGATGGTTTATGACATTGATGGAGTTCATGTACA
ATACTCAGTACAGGAAAGGGAAGCTGATGGCACCAGCAGATGCGCTATCA
AGACTT
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