mRNA_H-akashiwo_Contig1190.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1190.6.1
Unique NamemRNA_H-akashiwo_Contig1190.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1190.6.1 vs. uniprot
Match: A0A6S9DR75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DR75_HETAK)

HSP 1 Score: 177 bits (449), Expect = 5.980e-51
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 PSLLSRRLFNTPLGPLKSSPQEDSSNEKFPTAPQVLQDPPPSSTDAAPQKYKEISLLKQVDSTGVDPSHVTPTVKELLRFIFPAVAMLMVG 273
            PSLLSRRLFNTPLGPLKSSPQEDSSNEKFPTAPQVLQDPPPSSTDAAPQKYKEISLLKQVDSTGVDPSHVTPTVKELLRFIFPAVAMLM G
Sbjct:   50 PSLLSRRLFNTPLGPLKSSPQEDSSNEKFPTAPQVLQDPPPSSTDAAPQKYKEISLLKQVDSTGVDPSHVTPTVKELLRFIFPAVAMLMAG 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1190.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6S9DR75_HETAK5.980e-5198.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1190contigH-akashiwo_Contig1190:76788..77348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size285
Hectar predicted targeting categorymitochondrion
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.7660031-CDS-H-akashiwo_Contig1190:76787..768821681387111.7660031-CDS-H-akashiwo_Contig1190:76787..76882Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 76788..76882 -
1681387111.782305-CDS-H-akashiwo_Contig1190:77158..773481681387111.782305-CDS-H-akashiwo_Contig1190:77158..77348Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 77159..77348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1190.6.1prot_H-akashiwo_Contig1190.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1190 76788..77348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1190.6.1

>prot_H-akashiwo_Contig1190.6.1 ID=prot_H-akashiwo_Contig1190.6.1|Name=mRNA_H-akashiwo_Contig1190.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
PSLLSRRLFNTPLGPLKSSPQEDSSNEKFPTAPQVLQDPPPSSTDAAPQK
YKEISLLKQVDSTGVDPSHVTPTVKELLRFIFPAVAMLMVGLHF*
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mRNA from alignment at H-akashiwo_Contig1190:76788..77348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1190.6.1 ID=mRNA_H-akashiwo_Contig1190.6.1|Name=mRNA_H-akashiwo_Contig1190.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=561bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:76788..77348- (Heterosigma akashiwo CCMP452)
CCTTCGTTGCTTTCCCGCCGGTTGTTTAATACTCCCTTGGGCCCTCTCAA
GAGCTCTCCCCAGGAAGATAGCAGTAATGAAAAATTTCCCACCGCCCCAC
AAGTCCTGCAAGACCCACCACCTTCTTCGACAGATGCAGCTCCGCAGAAG
TACAAAGAAATATCACTATTGAAGCAAGTAGACAGTACAGGTAAGCCATA
CCACCATCATAATTCAAAATCATCATAACAAAATCAGTTGGTATCTGCTT
GCGTTAACTCATTTACGGGTTGCCAGGCTGCTTTTTGAAAGATTCAAATA
TTTTGAAATACATCATCATTCTCTATGTTGTACATATACATAGACAATTC
AAATCTGGGGTGCCATGACTAACTCTATCTAAAAAAGCCACAATCAATAT
ATTCCTTTTCTTCCATTTACTTTGGGGCTGAATGGCGATTGATCATGGAT
GCATGATAATAATCAGGGGTTGACCCTAGCCATGTGACACCAACGGTCAA
GGAACTGCTGCGATTCATCTTCCCTGCTGTTGCAATGCTCATGGTAGGGC
TCCATTTTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1190:76788..77348-

>mRNA_H-akashiwo_Contig1190.6.1 ID=mRNA_H-akashiwo_Contig1190.6.1|Name=mRNA_H-akashiwo_Contig1190.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:76788..77348- (Heterosigma akashiwo CCMP452)
CCTTCGTTGCTTTCCCGCCGGTTGTTTAATACTCCCTTGGGCCCTCTCAA
GAGCTCTCCCCAGGAAGATAGCAGTAATGAAAAATTTCCCACCGCCCCAC
AAGTCCTGCAAGACCCACCACCTTCTTCGACAGATGCAGCTCCGCAGAAG
TACAAAGAAATATCACTATTGAAGCAAGTAGACAGTACAGGGGTTGACCC
TAGCCATGTGACACCAACGGTCAAGGAACTGCTGCGATTCATCTTCCCTG
CTGTTGCAATGCTCATGGTAGGGCTCCATTTTTAA
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