mRNA_H-akashiwo_Contig1190.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1190.15.1
Unique NamemRNA_H-akashiwo_Contig1190.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1190.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1190contigH-akashiwo_Contig1190:308698..309102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categorymitochondrion
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.847804-UTR-H-akashiwo_Contig1190:308697..3087181681387111.847804-UTR-H-akashiwo_Contig1190:308697..308718Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1190 308698..308718 +
1681387111.864087-UTR-H-akashiwo_Contig1190:309045..3091021681387111.864087-UTR-H-akashiwo_Contig1190:309045..309102Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1190 309046..309102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.8560777-CDS-H-akashiwo_Contig1190:308718..3090451681387111.8560777-CDS-H-akashiwo_Contig1190:308718..309045Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 308719..309045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1190.15.1prot_H-akashiwo_Contig1190.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1190 308719..309045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1190.15.1

>prot_H-akashiwo_Contig1190.15.1 ID=prot_H-akashiwo_Contig1190.15.1|Name=mRNA_H-akashiwo_Contig1190.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
MQRTSRWGMPLPCLSRRLVWRCGCFQLLYSGFAHFVFEKKKEEEITAGGL
YPWTIPIAITMATCARNCSYCRRQRMYSSTGSIPFAVSQIIIQRKAIGVI
KLLTLPWH*
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mRNA from alignment at H-akashiwo_Contig1190:308698..309102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1190.15.1 ID=mRNA_H-akashiwo_Contig1190.15.1|Name=mRNA_H-akashiwo_Contig1190.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=405bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:308698..309102+ (Heterosigma akashiwo CCMP452)
ACAGCAGTGAGCTGGGAGTAAATGCAGCGTACTTCGCGTTGGGGCATGCC
TTTGCCCTGCTTATCAAGAAGACTGGTGTGGAGGTGCGGCTGCTTCCAGT
TGCTATATAGTGGCTTTGCCCATTTTGTCTTTGAAAAGAAGAAGGAAGAG
GAGATTACGGCCGGTGGCCTGTACCCATGGACAATTCCAATTGCCATAAC
GATGGCAACCTGTGCAAGAAATTGTTCCTACTGTAGAAGACAAAGAATGT
ACTCCTCAACGGGGAGCATTCCATTCGCAGTCTCTCAGATTATTATACAG
AGGAAAGCCATTGGGGTCATCAAACTTCTGACCCTGCCATGGCATTGATC
ATCTTATGATTGGAGAAGTTCAGGTATGATTCTCTGCACAATATGATCAA
GTCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1190:308698..309102+

>mRNA_H-akashiwo_Contig1190.15.1 ID=mRNA_H-akashiwo_Contig1190.15.1|Name=mRNA_H-akashiwo_Contig1190.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:308698..309102+ (Heterosigma akashiwo CCMP452)
ATGCAGCGTACTTCGCGTTGGGGCATGCCTTTGCCCTGCTTATCAAGAAG
ACTGGTGTGGAGGTGCGGCTGCTTCCAGTTGCTATATAGTGGCTTTGCCC
ATTTTGTCTTTGAAAAGAAGAAGGAAGAGGAGATTACGGCCGGTGGCCTG
TACCCATGGACAATTCCAATTGCCATAACGATGGCAACCTGTGCAAGAAA
TTGTTCCTACTGTAGAAGACAAAGAATGTACTCCTCAACGGGGAGCATTC
CATTCGCAGTCTCTCAGATTATTATACAGAGGAAAGCCATTGGGGTCATC
AAACTTCTGACCCTGCCATGGCATTGA
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