mRNA_H-akashiwo_Contig1190.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1190.13.1
Unique NamemRNA_H-akashiwo_Contig1190.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1190.13.1 vs. uniprot
Match: A0A835Z7M5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.510e-8
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MAQDDGYSASELRQRYNKGGTYGDDQLTAAQLRARHGIQSNKADFSTSQGG 153
            M  DDG+SASELRQRY++GGT  D +L+AAQLRAR+GI +NK D    + G
Sbjct:    1 MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGI-ANKPDVGMDKKG 50
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BLAST of mRNA_H-akashiwo_Contig1190.13.1 vs. uniprot
Match: A0A1W0A1W3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1W3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.910e-6
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 DDGYSASELRQRYNKGGTYGDDQLTAAQLRARHGIQSN 123
            DDGY+A+ELR RY +GGT GD  L+AAQLR+R+ I+ N
Sbjct:    3 DDGYTATELRSRYGRGGTVGDSDLSAAQLRSRYSIEKN 40
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BLAST of mRNA_H-akashiwo_Contig1190.13.1 vs. uniprot
Match: A0A2D4BS94_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS94_PYTIN)

HSP 1 Score: 50.4 bits (119), Expect = 2.230e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 DDGYSASELRQRYNKGGTYGDDQLTAAQLRARHGIQSN 123
            DDGY+ASELRQRY +GG+  D  L+AAQLRAR+ I +N
Sbjct:    3 DDGYTASELRQRYERGGSVQDCDLSAAQLRARYAIPNN 40
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BLAST of mRNA_H-akashiwo_Contig1190.13.1 vs. uniprot
Match: A0A5A8DEX5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DEX5_CAFRO)

HSP 1 Score: 50.1 bits (118), Expect = 3.920e-5
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 SASELRQRYNKGGTYGDDQLTAAQLRARHGIQSNKADFS 138
            SA ELR+RY+ GG+  D +LTA+QLR+RHGI SN  +FS
Sbjct:    7 SAGELRRRYHAGGSVPDSELTASQLRSRHGIASNSKNFS 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1190.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z7M5_9STRA6.510e-860.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W0A1W3_9STRA2.910e-663.16Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4BS94_PYTIN2.230e-565.79Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5A8DEX5_CAFRO3.920e-561.54Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1190contigH-akashiwo_Contig1190:273930..274656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI48993
Model size532
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000116
EggNOG OGs2E6J9@1|root,2SD8M@2759|Eukaryota,3QIKG@4776|Peronosporales
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.1989408-CDS-H-akashiwo_Contig1190:273929..2740591681387112.1989408-CDS-H-akashiwo_Contig1190:273929..274059Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 273930..274059 +
1681387112.2081873-CDS-H-akashiwo_Contig1190:274254..2743701681387112.2081873-CDS-H-akashiwo_Contig1190:274254..274370Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 274255..274370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387112.2167914-UTR-H-akashiwo_Contig1190:274370..2746561681387112.2167914-UTR-H-akashiwo_Contig1190:274370..274656Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1190 274371..274656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1190.13.1prot_H-akashiwo_Contig1190.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1190 273930..274370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1190.13.1

>prot_H-akashiwo_Contig1190.13.1 ID=prot_H-akashiwo_Contig1190.13.1|Name=mRNA_H-akashiwo_Contig1190.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=82bp
MAQDDGYSASELRQRYNKGGTYGDDQLTAAQLRARHGIQSNKADFSTSQG
GKDSGGGSAMMIIVIVLVIAAAGAFFFLNKS*
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mRNA from alignment at H-akashiwo_Contig1190:273930..274656+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1190.13.1 ID=mRNA_H-akashiwo_Contig1190.13.1|Name=mRNA_H-akashiwo_Contig1190.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=727bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:273930..274656+ (Heterosigma akashiwo CCMP452)
ATGGCTCAAGATGATGGCTATTCAGCTTCGGAGTTGCGACAGCGGTACAA
TAAAGGTGGAACCTATGGTGATGACCAACTGACTGCAGCCCAGCTTCGTG
CCAGGCATGGCATCCAATCAAATAAAGCAGGTACTGTTTGGAAACTGCAC
CTTTTGAATTTCACAGATTTATCCTGCCCTTGTGGGTATTCTTTTGGTAT
TTTATCATACAGGTCAAAACTTAACTGTTTAAAAGCAAGGTGTGGCCGAA
AATCATAATCTGGGTACTGCGATTAGCTGAAATACCACGGCCTGTTATTC
CTCCTTTTGATCTGTATATTCGTAGACTTTTCAACCTCACAAGGCGGGAA
AGATAGCGGTGGGGGTTCAGCCATGATGATCATAGTGATTGTTCTCGTAA
TTGCTGCTGCTGGGGCATTTTTCTTTCTGAACAAAAGCTGAGGGCCCTGA
AAGTTGAGCATTTTTAGTTTAGAAACTTGTTCCGTGCATGTTTGTATGTA
TGTATGTATGTATGTATAATTATTATTATTATTGATTGATTATAGCGAAG
ATTTTCCTTCAGCACTAAGGCGAAACAAGCAACGCTGTCAATATAGAAAT
ATGTGTATCTATGTCTGTCTGGACTGAGAAAGATTGACAAAGTATACTTC
TATCACCACAACTCATATGTATATGCTTAAGAACCAGAAAGGGGCAGGTA
GATCCTCAATGGAATCAGTATCTTTCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1190:273930..274656+

>mRNA_H-akashiwo_Contig1190.13.1 ID=mRNA_H-akashiwo_Contig1190.13.1|Name=mRNA_H-akashiwo_Contig1190.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=246bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:273930..274656+ (Heterosigma akashiwo CCMP452)
ATGGCTCAAGATGATGGCTATTCAGCTTCGGAGTTGCGACAGCGGTACAA
TAAAGGTGGAACCTATGGTGATGACCAACTGACTGCAGCCCAGCTTCGTG
CCAGGCATGGCATCCAATCAAATAAAGCAGACTTTTCAACCTCACAAGGC
GGGAAAGATAGCGGTGGGGGTTCAGCCATGATGATCATAGTGATTGTTCT
CGTAATTGCTGCTGCTGGGGCATTTTTCTTTCTGAACAAAAGCTGA
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