mRNA_H-akashiwo_Contig119.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig119.19.1
Unique NamemRNA_H-akashiwo_Contig119.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: A0A7S0SQE8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQE8_9STRA)

HSP 1 Score: 187 bits (475), Expect = 6.730e-54
Identity = 86/117 (73.50%), Postives = 98/117 (83.76%), Query Frame = 3
Query:  507 HDLSSPSPSKKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            HDLS+      +R VRKWT+EED++M ALV E+GT+HWGLIG+KLNGRTGKQCRERWHNQLDP INK PWT  EE +L+AAH + GN+WAEIAK LPGRTDNAIKNHWNSA RRL R
Sbjct:    8 HDLSNGQ----KRTVRKWTQEEDNLMMALVSEHGTRHWGLIGAKLNGRTGKQCRERWHNQLDPAINKTPWTEHEESLLLAAHNDLGNRWAEIAKRLPGRTDNAIKNHWNSAKRRLLR 120          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: A0A7S2CJK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJK5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.440e-51
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 3
Query:  534 KKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            K RRVVRKWT EED +M  LV+E+GTKHWG IGS L GRTGKQCRERWHNQLDP I K PWT  EE+IL+ AH+ +GN+WAEIAKLLPGRTDNA+KNHWNSA RRL+R
Sbjct:   43 KPRRVVRKWTPEEDSLMMTLVQEHGTKHWGRIGSSLQGRTGKQCRERWHNQLDPAIRKDPWTGGEEEILLKAHSLYGNRWAEIAKLLPGRTDNAVKNHWNSAKRRLSR 150          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: A0A835YSF8_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF8_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.570e-51
Identity = 83/116 (71.55%), Postives = 97/116 (83.62%), Query Frame = 3
Query:  525 SPSKKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTRRWQLN 872
            +PS  +RVVRKW+ EED +M  LVKE+GT+ WGLIGS L+GRTGKQCRERWHNQLDP I K  WT +EE++L+ AH+  GN+WAEIAKLLPGRTDNAIKNHWNSA RRL+R  QLN
Sbjct:   23 TPSSFKRVVRKWSPEEDQLMALLVKEHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPHIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLSR--QLN 136          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: A0A835YW24_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW24_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.040e-49
Identity = 75/105 (71.43%), Postives = 89/105 (84.76%), Query Frame = 3
Query:  540 RRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLT 854
            +R VRKW+ EED +M  LV+E+GT+ WGLIGS L+GRTGKQCRERWHNQLDP I K  WT +EE++L+ AH+  GN+WAEIAKLLPGRTDNAIKNHWNSA RRL+
Sbjct:    3 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 107          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: A0A024GD84_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GD84_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.310e-47
Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = 3
Query:  477 SPATSAVKEQHDLSSPSPSKKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            SPA  +V   H + +    K R+ V KWT EED+MM  LV+ YGT+HW +IG+KL GR GKQCRERWHNQLDP I K PWT +EE IL  AH ++GNKWAEIAK LPGRTDNAIKNHWNS+ RRL R
Sbjct:    8 SPAKQSVIYNHTVCTVR--KDRKPVSKWTDEEDNMMIKLVERYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDNAIKNHWNSSKRRLKR 132          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: D0MS64_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MS64_PHYIT)

HSP 1 Score: 169 bits (428), Expect = 5.030e-47
Identity = 77/112 (68.75%), Postives = 92/112 (82.14%), Query Frame = 3
Query:  522 PSPSKKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            P   K+R+ V KWT++ED +M  LV++YGT+HW +IG+KL GR GKQCRERWHNQLDP I K+PWTP+EE IL   H +FGNKWAEIAK+LPGRTDNAIKNHWNS+ RRL R
Sbjct:   23 PPTRKERKPVCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 134          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: K3WAA6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAA6_GLOUD)

HSP 1 Score: 171 bits (432), Expect = 5.050e-47
Identity = 82/141 (58.16%), Postives = 108/141 (76.60%), Query Frame = 3
Query:  444 PLAEMMAAPVPSPATSAVKEQHDLSSPSPS---KKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            P +EM      +   S ++++ +++SPS S   K+R+ V KWT++ED +M  LV++YGT+HW +IG+KL GR GKQCRERWHNQLDP I K+PW+ +EE IL  +H +FGNKWAEIAK+LPGRTDNAIKNHWNS+ RRL R
Sbjct:    7 PRSEMPQLSTSNSKPSKLQQRDNMNSPSSSTSRKERKPVCKWTEKEDLLMMKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWSEEEERILRESHEQFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 147          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: G4YFF8_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YFF8_PHYSP)

HSP 1 Score: 171 bits (434), Expect = 5.470e-47
Identity = 82/131 (62.60%), Postives = 103/131 (78.63%), Query Frame = 3
Query:  471 VPSPATSAVKEQHDLSSPSPS--KKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            +PS  ++A  E   L +P+P   K+R+ V KWT++ED +M  LV++YGT+HW +IG+KL GR GKQCRERWHNQLDP I K+PW+P+EE IL   H +FGNKWAEIAK+LPGRTDNAIKNHWNS+ RRL R
Sbjct:    2 MPSQHSAAQLELPQLEAPAPRLRKERKPVCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWSPEEERILRELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 132          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: W2QEC1_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QEC1_PHYPN)

HSP 1 Score: 169 bits (427), Expect = 6.720e-47
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 3
Query:  534 KKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            K+R+ V KWT++ED MM  LV++YGT+HW +IG+KL GR GKQCRERWHNQLDP I K+PWTP EE IL   H +FGNKWAEIAK+LPGRTDNAIKNHWNS+ RRL R
Sbjct:   24 KERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 131          
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Match: A0A329SGH1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGH1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.860e-47
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 3
Query:  510 DLSSP----SPSKKRRVVRKWTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINKKPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR 857
            DL  P    S  K+R+ V KWT++ED MM  LV++YGT+HW +IG+KL GR GKQCRERWHNQLDP I K+PWTP EE IL   H  FGNKWAEIAK+LPGRTDNAIKNHWNS+ RRL R
Sbjct:   16 DLEQPHQEFSTRKERKPVCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDTFGNKWAEIAKVLPGRTDNAIKNHWNSSKRRLKR 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig119.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0SQE8_9STRA6.730e-5473.50Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2CJK5_9STRA1.440e-5175.93Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YSF8_9STRA3.570e-5171.55Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YW24_9STRA3.040e-4971.43Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A024GD84_9STRA3.310e-4764.57Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
D0MS64_PHYIT5.030e-4768.75Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
K3WAA6_GLOUD5.050e-4758.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G4YFF8_PHYSP5.470e-4762.60Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2QEC1_PHYPN6.720e-4771.30Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A329SGH1_9STRA7.860e-4767.50Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig119contigH-akashiwo_Contig119:1383605..1385093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo127096
PFAMsMyb_DNA-binding
Model size898
Max annot lvl4776|Peronosporales
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.64e-49
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,3QA2B@4776|Peronosporales
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006800.1
DescriptionMyb-like DNA-binding domain
Cds size789
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.4961336-UTR-H-akashiwo_Contig119:1383604..13837111681387111.4961336-UTR-H-akashiwo_Contig119:1383604..1383711Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig119 1383605..1383711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.510725-CDS-H-akashiwo_Contig119:1383711..13842031681387111.510725-CDS-H-akashiwo_Contig119:1383711..1384203Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 1383712..1384203 +
1681387111.521137-CDS-H-akashiwo_Contig119:1384312..13843861681387111.521137-CDS-H-akashiwo_Contig119:1384312..1384386Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 1384313..1384386 +
1681387111.5307832-CDS-H-akashiwo_Contig119:1384721..13848061681387111.5307832-CDS-H-akashiwo_Contig119:1384721..1384806Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 1384722..1384806 +
1681387111.541212-CDS-H-akashiwo_Contig119:1384955..13850931681387111.541212-CDS-H-akashiwo_Contig119:1384955..1385093Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 1384956..1385093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig119.19.1prot_H-akashiwo_Contig119.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig119 1383712..1385093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig119.19.1

>prot_H-akashiwo_Contig119.19.1 ID=prot_H-akashiwo_Contig119.19.1|Name=mRNA_H-akashiwo_Contig119.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=263bp
MEKRKERAMSPAEEQSAATQHPVTPSLYPYPPHGLYCVQPPTPTSRLLVA
PTHPAHAMAVAHSPLFPPPGSKIALIEESEAARHYYGMMASHHAAGFPAF
HPMAMPYPGVYGPLAEMMAAPVPSPATSAVKEQHDLSSPSPSKKRRVVRK
WTKEEDDMMRALVKEYGTKHWGLIGSKLNGRTGKQCRERWHNQLDPQINK
KPWTPQEEDILIAAHTEFGNKWAEIAKLLPGRTDNAIKNHWNSANRRLTR
RWQLNRAPQTPLA
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mRNA from alignment at H-akashiwo_Contig119:1383605..1385093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig119.19.1 ID=mRNA_H-akashiwo_Contig119.19.1|Name=mRNA_H-akashiwo_Contig119.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1489bp|location=Sequence derived from alignment at H-akashiwo_Contig119:1383605..1385093+ (Heterosigma akashiwo CCMP452)
TGCAGAGACGTAGCAAGGCAGGGCAATTACATCTTTGAAACGGCCTCTCG GTAGCTACTTGTCCTTCTCTTGAAGGCTGTCTTTCTCTTTCCTTGATCTT GGAGAAAATGGAAAAGAGAAAAGAAAGAGCCATGTCACCCGCAGAGGAGC AAAGCGCTGCAACTCAACATCCGGTTACTCCATCGCTATATCCATACCCA CCACATGGTCTGTATTGTGTCCAACCACCAACCCCAACGAGCCGCTTGCT TGTTGCTCCGACCCACCCAGCCCATGCTATGGCCGTCGCTCACAGTCCAC TTTTCCCACCACCCGGCTCCAAGATTGCGCTTATTGAGGAGTCAGAAGCT GCTAGGCATTACTATGGGATGATGGCGTCACATCATGCAGCTGGATTTCC TGCATTCCACCCCATGGCCATGCCCTACCCTGGTGTATACGGACCATTGG CAGAAATGATGGCGGCTCCAGTCCCTTCGCCAGCGACATCGGCTGTCAAA GAGCAACACGACCTTTCCAGCCCTTCCCCTTCCAAAAAACGGCGGGTTGT CAGAAAATGGACAAAGGAAGAAGATGACATGATGAGAGCTTTGGTGAAGG TCAGCCCGGTTGTATTTTGGTTGCCCTGCATCCTTTCTTTTCGCCCCTAT ATCCGATTTTCCTTTGTCTTTAATTATGGAACTAAAATTCTCCGACTGTA TAATATAGGAATATGGCACAAAGCATTGGGGGCTGATTGGTTCCAAGCTC AACGGCCGGACTGGAAAACAGTGTCGTGAAAGGTGAGTGATTTTTTAGGA AGTCTGCAACGTTGTATACTCAATGATGTGCAAAGACTGGATGGAAGACA GGCTGGAATAGAGATGGAAAGAACTGGATGTATGTACGCGACAGCAATGA TGGAGATGGCAGCAGTGGTGGCTATACGTGCAAGCACTGATTCTGCAGGA TTGTTGTGAGAGTTGACAATTCATTCATATTTATATTTGGAATGAGTGGG GCTAGCTAGCAATTCCACGTTTAAAAGTTGCAAGCACCTCTGAACCACTT TTAATTAATTTGTATCTAAGTCTGGCCCCATTGTATTCTATTATGTTTTT GTTTTTGAAACAAATAGGTGGCACAACCAGCTTGACCCCCAAATCAACAA AAAGCCATGGACACCACAAGAGGAAGATATACTAATTGCAGCTCATACAG AGGTAAAATGGCAGAACAAAATAAAGTAACTGGTCGTATCCTCCATGCAT CAGATTTAAGCAAGCACTAACGCCGTAGAAATCTTTAGTCTCTCAAGTGT AGCGATCTCATGTCCATGTCTCTTTTTTGCCATGCCACCTGCTTCATCCA GTTTGGTAACAAGTGGGCGGAGATTGCCAAGCTTCTCCCAGGTCGCACGG ACAACGCGATCAAGAACCACTGGAACAGTGCCAACCGCCGCTTGACGCGG CGGTGGCAGCTCAACCGCGCCCCGCAAACCCCGCTGGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig119:1383605..1385093+

>mRNA_H-akashiwo_Contig119.19.1 ID=mRNA_H-akashiwo_Contig119.19.1|Name=mRNA_H-akashiwo_Contig119.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=789bp|location=Sequence derived from alignment at H-akashiwo_Contig119:1383605..1385093+ (Heterosigma akashiwo CCMP452)
ATGGAAAAGAGAAAAGAAAGAGCCATGTCACCCGCAGAGGAGCAAAGCGC
TGCAACTCAACATCCGGTTACTCCATCGCTATATCCATACCCACCACATG
GTCTGTATTGTGTCCAACCACCAACCCCAACGAGCCGCTTGCTTGTTGCT
CCGACCCACCCAGCCCATGCTATGGCCGTCGCTCACAGTCCACTTTTCCC
ACCACCCGGCTCCAAGATTGCGCTTATTGAGGAGTCAGAAGCTGCTAGGC
ATTACTATGGGATGATGGCGTCACATCATGCAGCTGGATTTCCTGCATTC
CACCCCATGGCCATGCCCTACCCTGGTGTATACGGACCATTGGCAGAAAT
GATGGCGGCTCCAGTCCCTTCGCCAGCGACATCGGCTGTCAAAGAGCAAC
ACGACCTTTCCAGCCCTTCCCCTTCCAAAAAACGGCGGGTTGTCAGAAAA
TGGACAAAGGAAGAAGATGACATGATGAGAGCTTTGGTGAAGGAATATGG
CACAAAGCATTGGGGGCTGATTGGTTCCAAGCTCAACGGCCGGACTGGAA
AACAGTGTCGTGAAAGGTGGCACAACCAGCTTGACCCCCAAATCAACAAA
AAGCCATGGACACCACAAGAGGAAGATATACTAATTGCAGCTCATACAGA
GTTTGGTAACAAGTGGGCGGAGATTGCCAAGCTTCTCCCAGGTCGCACGG
ACAACGCGATCAAGAACCACTGGAACAGTGCCAACCGCCGCTTGACGCGG
CGGTGGCAGCTCAACCGCGCCCCGCAAACCCCGCTGGCT
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