mRNA_H-akashiwo_Contig1183.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1183.12.1
Unique NamemRNA_H-akashiwo_Contig1183.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1183.12.1 vs. uniprot
Match: A0A7S3XKE6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKE6_HETAK)

HSP 1 Score: 214 bits (546), Expect = 7.260e-69
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 GASCQHNGSSSSKATETNQSFSSLDNVEKQGERALSQVVANDDEQRQEKEAGRKKDSSIGNTPAGLTATAQTKKTSSNPSPDSDCHKKSSNYHLQELHRDLKNANNEESKHSSLTAALV 357
            GASCQHNGSSSSKATETNQSFSSLDNVEKQGERALSQVVANDDEQRQEKEAGRKKDSSIGNTPAGLTATAQTKKTSSNPSPDSDCHKKSSNYHLQELHRDLKNANNEESKHSSLTAALV
Sbjct:   63 GASCQHNGSSSSKATETNQSFSSLDNVEKQGERALSQVVANDDEQRQEKEAGRKKDSSIGNTPAGLTATAQTKKTSSNPSPDSDCHKKSSNYHLQELHRDLKNANNEESKHSSLTAALV 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1183.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XKE6_HETAK7.260e-69100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1183contigH-akashiwo_Contig1183:232540..232980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387109.3973808-CDS-H-akashiwo_Contig1183:232539..2328991681387109.3973808-CDS-H-akashiwo_Contig1183:232539..232899Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1183 232540..232899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387109.4072704-UTR-H-akashiwo_Contig1183:232899..2329801681387109.4072704-UTR-H-akashiwo_Contig1183:232899..232980Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1183 232900..232980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1183.12.1prot_H-akashiwo_Contig1183.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1183 232540..232899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1183.12.1

>prot_H-akashiwo_Contig1183.12.1 ID=prot_H-akashiwo_Contig1183.12.1|Name=mRNA_H-akashiwo_Contig1183.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=120bp
GASCQHNGSSSSKATETNQSFSSLDNVEKQGERALSQVVANDDEQRQEKE
AGRKKDSSIGNTPAGLTATAQTKKTSSNPSPDSDCHKKSSNYHLQELHRD
LKNANNEESKHSSLTAALV*
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mRNA from alignment at H-akashiwo_Contig1183:232540..232980+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1183.12.1 ID=mRNA_H-akashiwo_Contig1183.12.1|Name=mRNA_H-akashiwo_Contig1183.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=441bp|location=Sequence derived from alignment at H-akashiwo_Contig1183:232540..232980+ (Heterosigma akashiwo CCMP452)
GGTGCCTCATGCCAGCATAATGGTTCTTCGTCGTCAAAAGCGACTGAGAC
AAACCAATCTTTTTCTTCCTTGGACAACGTTGAAAAGCAAGGGGAAAGAG
CACTCTCTCAGGTTGTCGCTAATGATGATGAACAACGACAAGAAAAAGAG
GCTGGTCGCAAAAAGGATTCTTCTATTGGCAATACCCCAGCTGGCTTAAC
AGCAACAGCACAGACCAAAAAAACAAGCAGCAATCCCAGCCCAGATAGTG
ATTGTCACAAGAAGAGCAGCAATTATCATTTGCAGGAACTTCACCGAGAT
TTAAAAAATGCCAACAATGAGGAATCAAAGCATTCATCATTGACTGCTGC
TTTGGTATAGTACTATTGCATGTATTAATAGGCAGCAGTAGCAATAAGGA
GCAGCAATATTTAATGATAAGCAAAATAGGGAACCATCCTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1183:232540..232980+

>mRNA_H-akashiwo_Contig1183.12.1 ID=mRNA_H-akashiwo_Contig1183.12.1|Name=mRNA_H-akashiwo_Contig1183.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=360bp|location=Sequence derived from alignment at H-akashiwo_Contig1183:232540..232980+ (Heterosigma akashiwo CCMP452)
GGTGCCTCATGCCAGCATAATGGTTCTTCGTCGTCAAAAGCGACTGAGAC
AAACCAATCTTTTTCTTCCTTGGACAACGTTGAAAAGCAAGGGGAAAGAG
CACTCTCTCAGGTTGTCGCTAATGATGATGAACAACGACAAGAAAAAGAG
GCTGGTCGCAAAAAGGATTCTTCTATTGGCAATACCCCAGCTGGCTTAAC
AGCAACAGCACAGACCAAAAAAACAAGCAGCAATCCCAGCCCAGATAGTG
ATTGTCACAAGAAGAGCAGCAATTATCATTTGCAGGAACTTCACCGAGAT
TTAAAAAATGCCAACAATGAGGAATCAAAGCATTCATCATTGACTGCTGC
TTTGGTATAG
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