mRNA_H-akashiwo_Contig1181.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1181.2.1
Unique NamemRNA_H-akashiwo_Contig1181.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1181.2.1 vs. uniprot
Match: A0A820QT76_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820QT76_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 3.700e-5
Identity = 59/238 (24.79%), Postives = 95/238 (39.92%), Query Frame = 1 
Query:  124 HWHSKFVENDEGQHQVTTWYEGVNKKTPAVNNSLESQHKRMKTDHLLNTKRTLPLLLNQSLDIISMWHRQAFLHADLQGPRLTPTADLKVDTEAFKWITAGANWVDSEIQVLDGTTLDQPLPVVLIPSRARVESGHLPADRTELRKLLEQYAFPALPFRAFSHYEQCKTSVYVIWCFDGKEQGKPHW---ICSCYVGLKQKICKHVVGVQAMKGIYTLREEAKDLPIRAKRKRGRPKK 828
            H   ++ EN E     +TWYE  N  TP+ NNSL++ +  +K  + L     L      + DI+  W +           ++ P       T   K  T   ++  S   VL   +           SR  +   ++PA   +    + Q+       + ++ ++Q K   + IW       G   W    C+C    K+ ICK V+G+            AKD+ +R KRKRGRP+K
Sbjct:   24 HDFLQYFEN-EWLQTFSTWYEEYNCFTPSTNNSLKATNIVIKDKYTLREGHPLSRFFVIANDIVRRWSKS------WDPKQIDPIIYSSEPTITLKKWTDAYHFAKSSKLVLQTPS-----------SRKDIIDYYIPAGEAQH---ITQHDIQKYQKKTWNSFDQFKILQFGIWKVTLSNDGTK-WKSGTCNCPNFFKEFICKQVIGMAIRLEFCKPPSSAKDIALRQKRKRGRPRK 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1181.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A820QT76_9BILA3.700e-524.79Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1181contigH-akashiwo_Contig1181:224724..225551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size828
Hectar predicted targeting categoryother localisation
Exons1
Cds size828
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387109.3677886-CDS-H-akashiwo_Contig1181:224723..2255511681387109.3677886-CDS-H-akashiwo_Contig1181:224723..225551Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1181 224724..225551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1181.2.1prot_H-akashiwo_Contig1181.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1181 224724..225551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1181.2.1

>prot_H-akashiwo_Contig1181.2.1 ID=prot_H-akashiwo_Contig1181.2.1|Name=mRNA_H-akashiwo_Contig1181.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=276bp
RIIKGKLDVLQLAPNRAQFKSAGNCLKEELSKDSTVASFASHWHSKFVEN
DEGQHQVTTWYEGVNKKTPAVNNSLESQHKRMKTDHLLNTKRTLPLLLNQ
SLDIISMWHRQAFLHADLQGPRLTPTADLKVDTEAFKWITAGANWVDSEI
QVLDGTTLDQPLPVVLIPSRARVESGHLPADRTELRKLLEQYAFPALPFR
AFSHYEQCKTSVYVIWCFDGKEQGKPHWICSCYVGLKQKICKHVVGVQAM
KGIYTLREEAKDLPIRAKRKRGRPKK
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mRNA from alignment at H-akashiwo_Contig1181:224724..225551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1181.2.1 ID=mRNA_H-akashiwo_Contig1181.2.1|Name=mRNA_H-akashiwo_Contig1181.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=828bp|location=Sequence derived from alignment at H-akashiwo_Contig1181:224724..225551+ (Heterosigma akashiwo CCMP452)
CGCATTATTAAGGGAAAGCTGGACGTCCTCCAGCTTGCTCCTAACAGAGC
TCAATTCAAATCCGCAGGCAATTGCTTGAAGGAGGAGCTGTCAAAGGACA
GCACTGTTGCATCTTTTGCTTCACACTGGCATTCCAAGTTCGTCGAGAAT
GATGAAGGGCAGCATCAGGTCACAACGTGGTATGAAGGAGTTAACAAGAA
GACACCAGCTGTGAATAACTCCTTGGAAAGCCAGCACAAACGCATGAAGA
CTGATCACCTTTTGAACACCAAGCGAACCTTGCCGCTGTTGCTAAATCAG
AGCCTCGACATCATCAGCATGTGGCACCGCCAGGCCTTCCTCCATGCTGA
CCTCCAAGGGCCTCGGCTAACACCAACAGCGGATCTGAAGGTGGACACTG
AGGCCTTCAAGTGGATAACTGCTGGTGCCAATTGGGTGGACAGCGAGATC
CAGGTTTTGGACGGCACAACGTTGGATCAGCCCCTGCCAGTGGTGTTGAT
CCCATCTCGTGCCCGTGTGGAGAGTGGGCATCTTCCAGCGGACCGCACCG
AGCTGCGTAAGCTTCTCGAGCAGTATGCTTTCCCTGCACTCCCCTTCAGG
GCTTTTTCGCACTATGAGCAGTGCAAAACCTCTGTGTATGTTATTTGGTG
CTTTGATGGAAAGGAACAAGGAAAGCCGCACTGGATCTGCAGTTGCTACG
TTGGCCTGAAGCAAAAAATCTGCAAGCACGTCGTTGGTGTTCAAGCCATG
AAgGGGATTTATACGCTGCGTGAGGAGGCCAAGGACCTACCTATCCGTGC
AAAGAGAAAGCGTGGGCGTCCAAAGAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1181:224724..225551+

>mRNA_H-akashiwo_Contig1181.2.1 ID=mRNA_H-akashiwo_Contig1181.2.1|Name=mRNA_H-akashiwo_Contig1181.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=828bp|location=Sequence derived from alignment at H-akashiwo_Contig1181:224724..225551+ (Heterosigma akashiwo CCMP452)
CGCATTATTAAGGGAAAGCTGGACGTCCTCCAGCTTGCTCCTAACAGAGC
TCAATTCAAATCCGCAGGCAATTGCTTGAAGGAGGAGCTGTCAAAGGACA
GCACTGTTGCATCTTTTGCTTCACACTGGCATTCCAAGTTCGTCGAGAAT
GATGAAGGGCAGCATCAGGTCACAACGTGGTATGAAGGAGTTAACAAGAA
GACACCAGCTGTGAATAACTCCTTGGAAAGCCAGCACAAACGCATGAAGA
CTGATCACCTTTTGAACACCAAGCGAACCTTGCCGCTGTTGCTAAATCAG
AGCCTCGACATCATCAGCATGTGGCACCGCCAGGCCTTCCTCCATGCTGA
CCTCCAAGGGCCTCGGCTAACACCAACAGCGGATCTGAAGGTGGACACTG
AGGCCTTCAAGTGGATAACTGCTGGTGCCAATTGGGTGGACAGCGAGATC
CAGGTTTTGGACGGCACAACGTTGGATCAGCCCCTGCCAGTGGTGTTGAT
CCCATCTCGTGCCCGTGTGGAGAGTGGGCATCTTCCAGCGGACCGCACCG
AGCTGCGTAAGCTTCTCGAGCAGTATGCTTTCCCTGCACTCCCCTTCAGG
GCTTTTTCGCACTATGAGCAGTGCAAAACCTCTGTGTATGTTATTTGGTG
CTTTGATGGAAAGGAACAAGGAAAGCCGCACTGGATCTGCAGTTGCTACG
TTGGCCTGAAGCAAAAAATCTGCAAGCACGTCGTTGGTGTTCAAGCCATG
AAgGGGATTTATACGCTGCGTGAGGAGGCCAAGGACCTACCTATCCGTGC
AAAGAGAAAGCGTGGGCGTCCAAAGAAG
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