mRNA_H-akashiwo_Contig1181.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1181.1.1
Unique NamemRNA_H-akashiwo_Contig1181.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A7S3Y8J9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J9_HETAK)

HSP 1 Score: 128 bits (321), Expect = 8.120e-35
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL 255
            +E +G TIDPRGNWS H +A+A +ARK LGAIRR++HMLDD + M AYKAFVRSKIEYG+L YWGAAE +L+KLDR Q SAV++L
Sbjct:  180 LEALGFTIDPRGNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVRSKIEYGNLIYWGAAEGYLEKLDRVQSSAVSML 264          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A7S3Y8U8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U8_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.000e-33
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL 255
            +E +G TIDPRGNWS H +A+A +ARK LGAIRR++HMLDD + M AYKAFVRSKIEYG+L YWGAAE +L+KLDR Q SAV++L
Sbjct:  170 LEALGFTIDPRGNWSLHAEAVAKEARKRLGAIRRIAHMLDDRAKMMAYKAFVRSKIEYGNLIYWGAAEGYLEKLDRVQSSAVSML 254          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 105 bits (262), Expect = 1.380e-24
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL 255
            +EI+G  +D +GNWS+  +A AS AR+ LGA+RR++ +LDD+ I   YK FVRSKIEYGSL YWGAA+ HL+ LD  Q SA+ LL
Sbjct:  623 LEILGFLVDNKGNWSKFAEATASAARQRLGALRRLAPLLDDDCINMVYKTFVRSKIEYGSLVYWGAADGHLRDLDAIQRSALKLL 707          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: UPI001E1CCF39 (uncharacterized protein LOC123500423 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CCF39)

HSP 1 Score: 72.4 bits (176), Expect = 1.590e-13
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL 255
            +E++G+T D    +  HI+ +A +A   L ++RR+S +LD   +   YKA VRS +EY SLA+ GAA +HL  LD+ QE A  L+
Sbjct:   38 VEVLGVTYDRELTFRTHIERLAREASGKLASLRRISWLLDSEGLELLYKAQVRSSLEYASLAWGGAARTHLALLDKVQERAARLI 122          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A5B7CWV3_PORTR (Uncharacterized protein n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7CWV3_PORTR)

HSP 1 Score: 68.9 bits (167), Expect = 6.450e-12
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDR 228
            +E++G+T D R  +  HI+ +A +A   L ++RRMS +LD+ S+   YKA +RS +EYG LA+ GAA  HL  +D+
Sbjct:  119 VEVLGITYDCRLTFKSHIERLAREASGKLASLRRMSWLLDNRSLEILYKAQIRSSMEYGYLAWGGAARKHLVLIDK 194          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A8J6HFQ5_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HFQ5_TENMO)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-10
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   10 IGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHM---LDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVAL 252
            +G+T D R  +S HI  + +D  + L  ++ ++H     D+ +I+R Y+A +RSK++YGS AY  A  S L+KLD  Q +A+ L
Sbjct:  662 LGMTFDARLTFSTHITTLKNDCLRRLNLLKAIAHTNWGSDERTILRTYRATIRSKLDYGSPAYGSATRSQLRKLDTIQNTALRL 745          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A8J6LLB1_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LLB1_TENMO)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-10
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   10 IGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHM---LDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVAL 252
            +G+T D R  +S HI  + +D  + L  ++ ++H     D+ +I+R Y+A +RSK++YGS AY  A  S L+KLD  Q +A+ L
Sbjct: 1103 LGITFDSRLTFSTHITTLKNDCLRRLNLLKAIAHTNWGSDERTILRTYRATIRSKLDYGSPAYGSATRSQLRKLDTIQNTALRL 1186          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A8J6H8G1_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H8G1_TENMO)

HSP 1 Score: 63.9 bits (154), Expect = 5.780e-10
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   10 IGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHM---LDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVAL 252
            +G+T D R  +S HI  + +D  + L  ++ ++H     D+ +I+R Y+A +RSK++YGS AY  A  S L KLD  Q +A+ L
Sbjct: 1036 LGITFDSRLTFSTHITTLKNDCLRRLNLLKAIAHTNWGSDERTILRTYRATIRSKLDYGSPAYGSATRSQLCKLDTIQNTALRL 1119          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A8C2JAV8_CYPCA (Zinc finger protein 330 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2JAV8_CYPCA)

HSP 1 Score: 62.4 bits (150), Expect = 1.960e-9
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL 255
            + I+GL ID +  W+ H+  I   A + LGA+RR+++ LD       YKA VR+ +EY  LA+  A+++ L +LD  Q+ A+ ++
Sbjct:  462 LNILGLWIDRKLLWTNHLSNICKRAGQRLGALRRLTNKLDVKGRASVYKAQVRNTMEYSCLAWMNASQTTLGQLDNIQKKALKII 546          
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Match: A0A1Y1M452_PHOPY (Reverse transcriptase domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M452_PHOPY)

HSP 1 Score: 60.8 bits (146), Expect = 6.680e-9
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHML---DDNSIMRAYKAFVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL 255
            ++ +GL +D +  W  HI+AI+S  +  L  IR +S      D  ++ +   AF+RSK+EYGS+ Y  AA S LK ++     A+ L+
Sbjct:  220 LKFLGLILDTKLTWKHHIEAISSKCKLTLNRIRVLSGHTWGADKETLTKVVNAFIRSKLEYGSVVYTSAARSQLKSIEGVWNKAMLLI 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1181.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8J9_HETAK8.120e-3569.41Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y8U8_HETAK1.000e-3369.41Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8N4_HETAK1.380e-2457.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001E1CCF391.590e-1342.35uncharacterized protein LOC123500423 n=1 Tax=Portu... [more]
A0A5B7CWV3_PORTR6.450e-1243.42Uncharacterized protein n=1 Tax=Portunus trituberc... [more]
A0A8J6HFQ5_TENMO1.200e-1038.10Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LLB1_TENMO1.200e-1038.10Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6H8G1_TENMO5.780e-1038.10Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8C2JAV8_CYPCA1.960e-936.47Zinc finger protein 330 n=1 Tax=Cyprinus carpio Ta... [more]
A0A1Y1M452_PHOPY6.680e-935.23Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1181contigH-akashiwo_Contig1181:150713..150967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7029.ACYPI37599-PA
PFAMsExo_endo_phos_2,RNase_H,RVT_1
Model size255
Max annot lvl33208|Metazoa
KEGG koko:K10443
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.86e-11
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A278@33154|Opisthokonta,3BQC7@33208|Metazoa,3D3FI@33213|Bilateria,422CS@6656|Arthropoda,3SUI6@50557|Insecta,3ECF5@33342|Paraneoptera
DescriptionEndonuclease-reverse transcriptase
Cds size255
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387109.341886-CDS-H-akashiwo_Contig1181:150712..1509671681387109.341886-CDS-H-akashiwo_Contig1181:150712..150967Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1181 150713..150967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1181.1.1prot_H-akashiwo_Contig1181.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1181 150713..150967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1181.1.1

>prot_H-akashiwo_Contig1181.1.1 ID=prot_H-akashiwo_Contig1181.1.1|Name=mRNA_H-akashiwo_Contig1181.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
MEIIGLTIDPRGNWSQHIQAIASDARKHLGAIRRMSHMLDDNSIMRAYKA
FVRSKIEYGSLAYWGAAESHLKKLDRTQESAVALL
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mRNA from alignment at H-akashiwo_Contig1181:150713..150967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1181.1.1 ID=mRNA_H-akashiwo_Contig1181.1.1|Name=mRNA_H-akashiwo_Contig1181.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1181:150713..150967+ (Heterosigma akashiwo CCMP452)
ATGGAAATTATTGGTTTGACTATAGATCCTAGGGGGAACTGGTCTCAGCA TATACAAGCAATAGCCTCAGATGCCCGCAAGCACTTGGGAGCAATCAGAA GGATGAGCCACATGCTTGATGACAATAGCATCATGAGGGCTTACAAAGCT TTTGTGCGCTCAAAGATTGAGTATGGCAGCCTGGCCTACTGGGGAGCCGC AGAAAGCCATTTGAAGAAGCTTGATAGAACTCAAGAGAGTGCTGTGGCCC TACTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1181:150713..150967+

>mRNA_H-akashiwo_Contig1181.1.1 ID=mRNA_H-akashiwo_Contig1181.1.1|Name=mRNA_H-akashiwo_Contig1181.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1181:150713..150967+ (Heterosigma akashiwo CCMP452)
ATGGAAATTATTGGTTTGACTATAGATCCTAGGGGGAACTGGTCTCAGCA
TATACAAGCAATAGCCTCAGATGCCCGCAAGCACTTGGGAGCAATCAGAA
GGATGAGCCACATGCTTGATGACAATAGCATCATGAGGGCTTACAAAGCT
TTTGTGCGCTCAAAGATTGAGTATGGCAGCCTGGCCTACTGGGGAGCCGC
AGAAAGCCATTTGAAGAAGCTTGATAGAACTCAAGAGAGTGCTGTGGCCC
TACTC
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