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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 44056.XP_009035466.1 |
| Preferred name | XRCC2 |
| PFAMs | Rad51 |
| Model size | 340 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00561 |
| KEGG ko | ko:K00454,ko:K10879,ko:K17890,ko:K21052 |
| KEGG Reaction | R03626,R07864,R07869 |
| KEGG Pathway | ko00515,ko00591,ko00592,ko01100,ko01110,ko03440,ko04136,ko04138,ko04140,ko04621,map00515,map00591,map00592,map01100,map01110,map03440,map04136,map04138,map04140,map04621 |
| KEGG Module | M00113 |
| Hectar predicted targeting category | no signal peptide or anchor |
| GOs | GO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000278,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001756,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007127,GO:0007131,GO:0007275,GO:0007389,GO:0007399,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009952,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010720,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035264,GO:0035282,GO:0035825,GO:0040007,GO:0042148,GO:0042623,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045003,GO:0045595,GO:0045597,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051321,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060429,GO:0060548,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1903046,GO:2000026,GO:2000269 |
| Exons | 2 |
| Evalue | 2.62e-10 |
| EggNOG OGs | KOG2859@1|root,KOG2859@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-00_005960.1 |
| EC | 1.13.11.12 |
| Description | meiotic DNA recombinase assembly |
| Cds size | 150 |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03400,ko04131 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681387108.216288-UTR-H-akashiwo_Contig118:206506..206534 | 1681387108.216288-UTR-H-akashiwo_Contig118:206506..206534 | Heterosigma akashiwo CCMP452 | UTR | H-akashiwo_Contig118 206507..206534 + |
| 1681387108.2421722-UTR-H-akashiwo_Contig118:213976..214138 | 1681387108.2421722-UTR-H-akashiwo_Contig118:213976..214138 | Heterosigma akashiwo CCMP452 | UTR | H-akashiwo_Contig118 213977..214138 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681387108.2266352-CDS-H-akashiwo_Contig118:206534..206540 | 1681387108.2266352-CDS-H-akashiwo_Contig118:206534..206540 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig118 206535..206540 + |
| 1681387108.234186-CDS-H-akashiwo_Contig118:213832..213976 | 1681387108.234186-CDS-H-akashiwo_Contig118:213832..213976 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig118 213833..213976 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig118.7.1 >prot_H-akashiwo_Contig118.7.1 ID=prot_H-akashiwo_Contig118.7.1|Name=mRNA_H-akashiwo_Contig118.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
MKVNAPHHLAPMSTDERLEEKLAKMRLDMAGGGEAPWDKFGRPKGLSFK* back to topmRNA from alignment at H-akashiwo_Contig118:206507..214138+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-akashiwo_Contig118.7.1 ID=mRNA_H-akashiwo_Contig118.7.1|Name=mRNA_H-akashiwo_Contig118.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7632bp|location=Sequence derived from alignment at H-akashiwo_Contig118:206507..214138+ (Heterosigma akashiwo CCMP452) ATCGCCCCAGCCGGCGCGGCTGGCGCCCATGAAGGTGCGGTGGGGAGGCC
GGGGGAAGGGGTTCAGAGTGGCCAGTGGGTGGGGACTGGTTTGGGCGGCG
GCAGCTTGTATCAATACTGAAGGTCTGGGAGACAAGAGAGGTGCATCATC
TAGTTGCTGTGTATACAAGAGATTGCGTGTCGATTAATAAGACCACCAGT
TGGGCTGTAGGCAAAAGGCGTTAGCCCAACATAATGTTTCACGGACTATC
ATCAAAGCTTTATTGAGGCCAAGGCCAAAATCACTGCTATAATATAATAT
ATAGCGCATAAAATACAAGATCATGAAACTATGTATAAGTATATTATGCG
TGACTCCAATATTTTAAAAAGGTCTGTTGCAAACTGGTTTTACCAAATAT
CAGTGGGGATGGGCAACTGCTAAAGACTACAGGGGGGGATCCTCACGGTG
TCGCTCCTCACGGTGTCGCCATCCTCACGGTGTCGCCTATTTTTTGGCTG
CCGAAATTTTGTCGCGTGCGGGGTCCGCCCGCACGGGGCCCGCGCGATAG
GCAGACCCCGCACGGGCGGACCCCGGATCCCGCTCGGAGAAGGAGGACGA
ATAAAGAGAAAGGGCGAGGAGGAAGTACGAAAGTAAAAAACTCTAATTTA
ATCTTCTAATATATCTCAGCCTTTCGTCTCGTAAACGGAATTATGTCGTT
CTTTTTCATGTTGAAATTTAATTCAATTCTTTTCTTAAATAAGATGATGC
CGCTATTCAACCAAGAGGTATAATTCTAAAATTAAAAAGCATATCTTAAA
TAATGTTGGTTTTCAATTGTAGTTTTAATTTATTCTTACCGATACGCCGT
GTCGTACAATGGCTGCAGGTTAAAGACTACAGGGGGGGATCCTCATGGTG
TCGCTCCTCACGGTGTCGCCATCCTCACGGTGTCGCCTATTTTTTGGCTG
CCGAAATTTTTTGTCGCGTCGGGTCCGCCCCGCCACGGGGCCCCTTGTGA
TAGGCAGACCCCCGCACGGGCGGACCCGGATCCCTTTCGGAGAAGGAGGA
CGAATAAAGAGAAAGGGCGAGGAGGAAGTATGAAAGTAAAAAACTCTAAT
TTAATCTTCTAATATATCTCAGCCTTTCGTCTCGTAAACGGAATTATGTC
GTTCTTTTTCATGTTGAAATACAATTCAATTCTTTTCTTAAATAAGATGA
TGCCGCTATTCAACCAAGAGGTATATAATTCTAAAATTAAAAAGCATATC
TTAAATAATGTTGGTTTTCAATTGTAGTTTTAATTTATTCTTACCGATAC
GCCGTGTCGTACAATTTTGAATTCCTTGCGTTTGTTTTTAGTTTTATTCC
ATGAAAAATCGTCAAAATCAAACACCGACGTGTGTGCAAAACATTGGTGC
ATTTTTGAAATAAACTGGATTGTTTTATTTGAGGATTTACGCATAATTAT
CATCATTCATTGTTGTCACGACGCTGCTCATTTGTCCCATTTGAGCTGGC
GTGGCTTGCCACAAACCAGTTGTTGTTTTGTTGTCCCAAAATTCTGCCTA
AGTCGATCCTGGGGTTCCGGGGGCGGGGGTAGGCCTCTAACCACTGCCCC
GGGCCCGGGCCCGGGGCCCGCATGGTCAACCCCCGGCCCGGGGCCCACAA
CCCCCCGGAACCTCACGGTGTCGCATCCTCACGGTGTCGCCTTTTTGTCG
TTTGCCGGGGAGGCGACACCGTGAGGATGCCCCCCTGTACACCAACACTC
AACAACATCATCGGCACTCTCTATGAAACAACTACACTCAAACCAGAGGC
CCCCCTCCTTCTGCTGCTTATATAGCAAAGTGGCGATGGCAAAAGAGGCG
GTGAACTTTGGGCTCAAGGTTGAACACCGCGACGCTCCCCAGATGGTTAC
TGGGGGCACCGTCCTCAGGGTGACAAAACCAGTTGCCGATGTTCATGTGT
CACAATGTACATAGATATCTGATCTGTAGATACTATGTACTTTTATTTTG
AGTCTTGGATCCTAAAACTCTCAGTCACCGTTTTCTGTTTTGTGTATGCA
TATTACAATCTAGTTATTCAAATGGCAGAGCCAAAAGAAATATGTTTTAA
GGTTGAAGGGTGAAAGGAAGTGACCCCCATTTCTGGGAAGGGCATGCGGG
CAGCCGCATCTGCTCTGCTGTGCTGCTGCCCCCCCCCCAAAATAATATGT
AGTCATATTCTCTTCTTTCGACTTACTTTATTACAATAAATAATAATAAA
AATAGCCAATCACTGTAATTCCACTACTTGTAAGCAATAAATGCAAGTAC
AAGAGTGTTCTTGTCCTTTGACAAAGTAAATCTGGAATAACTTTTCCTAT
ACAATTATAAAGATTATCTCGACGATAGCTGCCAGTATTACTTGTGCCAC
CAAAACTATCACCATTACCCAAGTGCAAAATACAAAGAGGGCAACAGCTA
TCAAAACTACCAAATAATCCAGAAAGTCGAAATGGACGAATTGTACTCTT
GAGATCCGAAGCACAGTGAGAGATGCACCGGAATGTCCGAAAATACAATA
ATGAGCGCGAAACAATAGCATCGGCCTCCAAGAGCGCCATCATTTGAATT
CTCCTCCCATTTTCGGCATGTAGTAGCAAAGCCATGAGAGTCTGAGGTGC
CTGCAAGGTCCTCATCTGGGAGGCGGCGATGGAGATCCGCAGGGTCAAAT
GTAGGCTGGTTGATGAACATGGCCTGTGGAGCAGCGGGTGCTGCAGGGGG
TGCCACTGGGGGTGCACCAGTTGCTAATACTAGTAGGAGTCCATTACTGC
TTCCTCTGTTGTTCTGAAGAGCCTGAATTAGGGCGTCCAATGTCCTCTGC
TGGGCTTGCTGGTTCTGGACCAAAGCTGCTATAGCAGCTGATCGTTCGTA
GCAGCAGACGGAGGAGGATGAGCACGTTGTCTGAGGACAGTAGGTCACTG
TCTTCAGTCCACATGGTCTAAGGATCCACATTTCCAGCACAAACCACGCA
TGCCACGGTAGGGAAGATCGCCAGGAGGTTGCTGGTCAGCTGCAGAAGCT
CCACGGGCAAGGTCGAGGTTGACGTCGCGCGCGGCACGGGCACCACCACC
TCCACGAAAGTGAGGAGTGTGCGCAGAGAATGCACGGGCATGGAAGTCAT
CGACGTCAAAGCCAAAGTTCTCGAGCTGGGCGATTGTGGCATGAACCTTG
AAGGAAGATTCCTCAGTGGTGCTAGGCAGCTCATCGATGCGCTCCTGCAG
AAGATCGAGGGCAAGGTCATGCGCGGGGGCAGGTCGGGGAGATGCCCGGC
GTTTTATTTCGTGCCCTATAGGAGCTGATTGATAGGATGATCAGCGTGCT
TACGTCCTTTGATGCAGGCCATCAGGATGGGGATGGAATCCTTATCCAAA
AGCTGATCATTGAAGCCCTTCTCGATGTCCTCAATCTGGCCAGTGAACTT
GACATGGAAAGCAGGGAAGTCATCCCCAATGCGGTACTCGTATACTCAGC
GAGCCTCGTACACATGTGTTGGGTGAATCGCACCTGCTGAGAGATGAGCC
TTCTCTTTACCTTGTCCCACACTTGGTATACGGTAGCTGTGAGCGCATGA
TGATCTTCGCTTTCTCCTGGTTCTCGTGAAAGGTCTTCAAGAAGTCAGCG
CCCATGGCCAGTTCAAGGGCTGATCGTATCACAGCCAACTCTCTCTCCAT
GGCAACTTGCTGCTCAATTTTCGGGTGGTTGATCATCCAATCCTCTATGT
TGAGCGCAGGTCTGTATATATATCGTTTCCGTCTTCTCCTCTGGAGCTCC
ATCAGCGTTGTAGTTCTCACTTTCTCAGGGACCCGAAAGATTATAGATGA
TGGGTCAAGTAGATGCGACATGCGACACTTTCCTATCACTCAAGGATTCT
CATGACATCCATCGTTCCGATTCCTTCTTAGCTCCAAAAGCTTCGTATCC
GAACCATTTAACTTGTCTTCTTGGGATGACTACATCTTCGTCGAATTACT
AAGAAGCAACGATAGCCCCAAATCCCCAAGGGATGAGAACTTATACTTCG
TAATTATCCAAGAGACCTAAGTCTCGTTGCAAAGTGAGCTGTGTACCTTC
TTCTCGCGATGGTTCGGGTACAATGTTGCTTCGTCAACTGTTGCAGCCAA
AGAACCAGAGTGTTGGAACTATACACACTAGTCACGCAGAGCGAATGCAG
TGGGTACCATACCAATCTATAGTTGTTCAAATGGCAGAGCCAAAAGAAAG
ATGTTAAAGTTGAAGGGTGAAAGGAAGTGACCCCCATTTCTGGGGGGGGC
ATGCGGGCAGCCGCATCTGCTCTGCTGTGCTGCTGCCCAAAAACAGAAAA
TAATAATTTATTCTTCTCTTCTTTCTACTTACTTCATAATAAATAATAAA
AATAGCCAATCACTGCAATTCCACTTGTAAGCCACAAATGCAAGTACAAG
TGTGCACTTGTAATTTGACAAAACAAATCTGAAATGACTTTTTCTCCAAT
TATAATTCACTGACTTTGGAAGATCTGCATAAGCCAAATCAAGATTGTCT
CATCAGCTGCCAGTATTGCTTGTGCCACCAAAACTATCACCATTACCCAA
GTGCAAAATACAAAGAGCAACAGCTATCAAAACTACCAAAGAATCCAGAA
GTCGAAAAGGACGAATTGTACTCTCGAGATCCGAAGCACAGTGAGAGATG
CACCGGAATGTCCGAAAATACAAGAATGAGCGCGAAACAACAGCATCGGC
CTCCGAGAGCGCCATCATTCAAATGTATTGTCTTTTTTTTGCTTCCCCCC
TCCCTGCGATTTAGCATTTAAGTGACCGGAAATTCCTTGTTATAACCTTA
GACGTTCCATATGCCCGGGATTGTAGCTATATGGCCATATATAGCATCTT
TTGAAAGTTGCCAGGGAGTTGGGCGGAAGATGAACTGGTCTCAGCTGATG
AAGGTGCTGTGGGCTTGCCGCAGCCAGCCGAGCTGATCTCCGAGGTTTTG
GGGCAGAGGGGTCATCAAACTCTGGTGTCAAGTTGTGAGCCATACCACGC
CCTCGCCCGTCCAGCAGCTTGCAGATTAATCCAATGGCAGCTTGTTCTCT
TCTACTTTCCAGTGAAGGGGGTAGTAGAGAAGGGTCGGGGTTGCGGAGTA
GGGCCACAGCACTCTCTTGAATTCTATCAAGCTTCTTCAAATGGCTTTTT
GCAGCTCCCCAATAGGCCAGGCTGCCATACTCAATCTTTGTGAGCGCACA
AAAGCTTTGTTGGCCCTCATGATGCTCTTGTCATCAAGCATGTGGCTCAT
CCTTCTGATTGCCCCCAAGCGCTTGCGGGCATCTGATGCTACTGCTCGTG
TGTGTTAAGACCAGTTTCCCCTAGGATCTATAGTCAGACCAAGAATTTCC
ATCTTCTTCTCCTCCTTGATTGCTATTCTTCCCACGCGGAGAGGGGGGTG
AAGCTTCTCCGTGTTCTTGCGCTTCTTGGTGTTGGAGACGACCAGTCCCT
GGGACTTCTTGGGCTCAAACTCCAGCAGCCACTCCTTGCCAAACAGGTAC
ACTAGTAGGTATCTATTTTTTTTTTTTGTCTATTAGTACGTGTAAGCACA
AAGTGGAGAAAACACTTCAGATAGGCTAACGTTAATGCTATACCTCTGCT
CAAGTCATTCGAAAATGTTTGTGGAATTAACTTATGATTCAAACACCAAC
GAGATCTTTTCAAGGTATAGATCGTCACCAGGTCACAATAGTACCCTCCT
AGTGCTGGCTACTGGGGATATGATGAAAAGAGGAGAAGGAAGATCAAACA
AACAAAGACTCAGCAACCTGTGTATCTTGTGGTATTGGTACGTCATCATC
AAAGATGCAACTAACAATGAATACCAAGATGCCTGAAGAACAAGAGATGG
AACAATGTTATTACTGCTCCACAACAGTGTTATCACTCTCCTTGGGGCTG
TGAAAAGCATGAAACCCACAATGAAGCTCGGCCTTGTGTCGCACAGCGCA
ATGTCCTTGTAGGGCATTGTAGAGGGGGATCAGGGATGACTCGTCACGAA
GGATAACGTAGTTGATGAACCGACGCCATTTGCCTTTACTTTATTTTTCT
TTCTTTTCTCTCCTTTCTTTTGTTCTTTTTTCTAAGACTTCTGATGTGTC
TGGAAGACAACAGGACATTGAAGCTGTTTTCTGAGTGGGAAAACCCCTCT
ATGCGCTGCTGTTGGAGAGTTTCATGGTCAAGGCTGTTCCATATCTCTGG
GGTTCTTGCTCTGGAGCTCCTTCTGTATGTGATTAGGAAGCGCCTGTTCC
CTGTGTGGCGGATTGCAGCAGCCTTCAGTTGATGAGGGTGCTGTGGCCCC
GCCACCCGCTGTGCTGCTAGTCTGTCGGAGGATCTTGTGGACTTCCATGT
CATAGGAGGAGCAAACACTGGCTGCACTTCTCTCAGCGCCCCCCGTCCTT
GGCCATCAAGCAGCAGCTTGCACTACCTCGACCTCCCTCCTGCTTTCCAG
TGAGGGGATGAAGAAGGGGGACAAATCCTCGAGCATCGAGACAGCACTGC
TTTGAACCCTGCCAAGCTTTTCGAGATATGGTGCAATGGCTTAGAATTTA
GATCTGAAGCGCAGGCGACCGTAACACCGAGGGAACATCACGGATTGAAA
AAATAAGCTTTGAGTGCACTACCTAACTTTTTGTAAGGTTTCCAAAAAAG
CTATATCCAGAAGCGTGAGTTTTTAGTGGGTGGGTCGATTTGCGCGACTT
TTTGTTTGGGCCCAAACCAGAAGTTGCCAAAAACTTGCTCTAAAAATACA
AACTCATTGTTCTAAGTATGATTTTTGGAATCGACGTCAAAAACGGCTAT
AACAATGCAATTTCCTTTTTTTTATTTGAAATGTTTTCTCAGAGATAAAC
TACAGGTGGAGCCGCCGTGGCGGCGATTAATAATGCCCCACCTGATAAAA
AAGTTGTTCTCTCATATATATTATAATATGTATATTTTTAATTGGTGTTT
TTAAAAATCTGTTCCGAGTGATGAATCAAACATGTTTCTAGGAGTCCAGA
ACTACTTTTCTTTTTGAAACCCGACATTTCTTTGCAGAGATGCAGCAGCG
CGCCGCTTCGGATCTAAATTCTAGGCCATCGCACCACAGCCCTGGGCCGC
CCCCCAGTATAGATGAGGTTGCCGCACTCAATTATTTGATCTTACAAAAA
CCTTGTATCTACTATTTATATTAATGAGTATGTATATGATGACCACGATG
ATGTTTATTTTTTTAGTTTTCAGTCCAACCTTTCAACCCAAGTATATGTA
TTGTATATGCCATGTGTACTCTTCAGGTCAATGCACCCCACCATCTTGCA
CCTATGAGCACAGACGAGCGGCTGGAGGAAAAATTGGCCAAGATGCGGCT
TGACATGGCAGGGGGGGGTGAGGCACCTTGGGACAAGTTTGGCAGGCCAA
AGGGTCTCTCGTTCAAGTAAAAGTCGTACCCAAGTGTGTATATATAGTAT
AAATCACTTTTTTTCTCCATTCATCACTTGATCATCAGGCACTAGTAGTG
CAGTCACACCACACAAAATCTGCCGTTTAATAAAATAAAACACCACCAAT
TATTTGCTATGTATATTATACAGAAATAATTT back to topCoding sequence (CDS) from alignment at H-akashiwo_Contig118:206507..214138+ >mRNA_H-akashiwo_Contig118.7.1 ID=mRNA_H-akashiwo_Contig118.7.1|Name=mRNA_H-akashiwo_Contig118.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig118:206507..214138+ (Heterosigma akashiwo CCMP452) ATGAAGGTCAATGCACCCCACCATCTTGCACCTATGAGCACAGACGAGCG GCTGGAGGAAAAATTGGCCAAGATGCGGCTTGACATGGCAGGGGGGGGTG AGGCACCTTGGGACAAGTTTGGCAGGCCAAAGGGTCTCTCGTTCAAGTAA back to top
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