mRNA_H-akashiwo_Contig118.24.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.24.1
Unique NamemRNA_H-akashiwo_Contig118.24.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig118.24.1 vs. uniprot
Match: A0A7S3URM0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URM0_HETAK)

HSP 1 Score: 225 bits (573), Expect = 2.340e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:    1 ADSLGSIDLFLDSNGVETPHISRRNLFGLIGQEEEKKKNCKGEHGLEPFPTPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCMDPXXXXXXXXXXXGPSAPNAPP 342
            ADSLGSIDLFLDSNGVETPHISRRNLFGLIGQEEEKKKNCKGEHGLEPFPTPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCMDPXXXXXXXXXXXGPSAPNAPP
Sbjct:   20 ADSLGSIDLFLDSNGVETPHISRRNLFGLIGQEEEKKKNCKGEHGLEPFPTPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCMDPXXXXXXXXXXXGPSAPNAPP 133
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BLAST of mRNA_H-akashiwo_Contig118.24.1 vs. uniprot
Match: A0A7S3XT53_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT53_HETAK)

HSP 1 Score: 110 bits (275), Expect = 8.040e-26
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  112 KNCKGEHGLEPFPTPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCM 276
            KNC GEHGL  FPTP +GWYCSGC+EKTG QTGVPKDTIFYGCRQC+ D C SCM
Sbjct:  506 KNCSGEHGLTKFPTPNNGWYCSGCYEKTGRQTGVPKDTIFYGCRQCDVDFCESCM 560
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BLAST of mRNA_H-akashiwo_Contig118.24.1 vs. uniprot
Match: A0A7S3UV78_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV78_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 2.720e-11
Identity = 29/56 (51.79%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:  115 NCKGEHGLEPFPTPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCMDP 282
            NC G HGL  F TP DGWYCSGC EKTG + GVP            +DLC  C  P
Sbjct:  195 NCPGSHGLTEFSTPADGWYCSGCLEKTGRRNGVPA----------GFDLCTECRGP 240
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BLAST of mRNA_H-akashiwo_Contig118.24.1 vs. uniprot
Match: A0A7S2G849_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G849_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.140e-6
Identity = 24/54 (44.44%), Postives = 29/54 (53.70%), Query Frame = 1 
Query:  115 NCKGEHGLEPFPTPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCM 276
            NC   HGL  F    DGW+CS C +K+            +GCRQCNYDLC+ C 
Sbjct:   97 NCPEMHGLAMFDAD-DGWFCSLCSKKS------VHGGCMFGCRQCNYDLCIKCF 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3URM0_HETAK2.340e-73100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XT53_HETAK8.040e-2680.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UV78_HETAK2.720e-1151.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2G849_9STRA7.140e-644.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:705879..706221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog227086.JGI_V11_59705
Model size344
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.86e-06
EggNOG OGs2D642@1|root,2T0NM@2759|Eukaryota
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387108.8077853-CDS-H-akashiwo_Contig118:705878..7062201681387108.8077853-CDS-H-akashiwo_Contig118:705878..706220Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 705879..706220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.24.1prot_H-akashiwo_Contig118.24.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 705879..706220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.24.1

>prot_H-akashiwo_Contig118.24.1 ID=prot_H-akashiwo_Contig118.24.1|Name=mRNA_H-akashiwo_Contig118.24.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
ADSLGSIDLFLDSNGVETPHISRRNLFGLIGQEEEKKKNCKGEHGLEPFP
TPIDGWYCSGCFEKTGAQTGVPKDTIFYGCRQCNYDLCVSCMDPPPPPGG
GEEEEGPSAPNAPP
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mRNA from alignment at H-akashiwo_Contig118:705879..706221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.24.1 ID=mRNA_H-akashiwo_Contig118.24.1|Name=mRNA_H-akashiwo_Contig118.24.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=343bp|location=Sequence derived from alignment at H-akashiwo_Contig118:705879..706221+ (Heterosigma akashiwo CCMP452)
GCGGACTCGCTTGGCTCAATCGATCTGTTTCTTGATTCTAATGGAGTAGA
GACTCCACACATTAGCCGGCGTAACCTGTTTGGCTTAATTGGTCAAGAGG
AGGAAAAGAAAAAGAACTGCAAAGGTGAGCACGGTCTTGAGCCATTCCCC
ACCCCAATCGACGGATGGTACTGCTCAGGCTGCTTCGAAAAGACAGGGGC
GCAGACTGGTGTGCCTAAGGACACCATATTCTATGGGTGCCGGCAGTGCA
ACTATGATTTGTGTGTGAGTTGTATGGATCCCCCCCCTCCCCCTGGGGGA
GGGGAAGAGGAGGAAGGGCCATCGGCGCCCAACGCGCCCCCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig118:705879..706221+

>mRNA_H-akashiwo_Contig118.24.1 ID=mRNA_H-akashiwo_Contig118.24.1|Name=mRNA_H-akashiwo_Contig118.24.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig118:705879..706221+ (Heterosigma akashiwo CCMP452)
GCGGACTCGCTTGGCTCAATCGATCTGTTTCTTGATTCTAATGGAGTAGA
GACTCCACACATTAGCCGGCGTAACCTGTTTGGCTTAATTGGTCAAGAGG
AGGAAAAGAAAAAGAACTGCAAAGGTGAGCACGGTCTTGAGCCATTCCCC
ACCCCAATCGACGGATGGTACTGCTCAGGCTGCTTCGAAAAGACAGGGGC
GCAGACTGGTGTGCCTAAGGACACCATATTCTATGGGTGCCGGCAGTGCA
ACTATGATTTGTGTGTGAGTTGTATGGATCCCCCCCCTCCCCCTGGGGGA
GGGGAAGAGGAGGAAGGGCCATCGGCGCCCAACGCGCCCCCA
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