mRNA_H-akashiwo_Contig118.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.15.1
Unique NamemRNA_H-akashiwo_Contig118.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:611408..614946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size292
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.538479-UTR-H-akashiwo_Contig118:611407..6114691681387107.538479-UTR-H-akashiwo_Contig118:611407..611469Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 611408..611469 +
1681387107.5670433-UTR-H-akashiwo_Contig118:614872..6149461681387107.5670433-UTR-H-akashiwo_Contig118:614872..614946Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 614873..614946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.5486214-CDS-H-akashiwo_Contig118:611469..6114861681387107.5486214-CDS-H-akashiwo_Contig118:611469..611486Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 611470..611486 +
1681387107.5577996-CDS-H-akashiwo_Contig118:614733..6148721681387107.5577996-CDS-H-akashiwo_Contig118:614733..614872Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 614734..614872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.15.1prot_H-akashiwo_Contig118.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 611470..614872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.15.1

>prot_H-akashiwo_Contig118.15.1 ID=prot_H-akashiwo_Contig118.15.1|Name=mRNA_H-akashiwo_Contig118.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MLEQYTFSLAARRFIWTIYDPSDFIDAMKEAEEEDVQVLNSDNLDVLGLG
K*
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mRNA from alignment at H-akashiwo_Contig118:611408..614946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.15.1 ID=mRNA_H-akashiwo_Contig118.15.1|Name=mRNA_H-akashiwo_Contig118.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3539bp|location=Sequence derived from alignment at H-akashiwo_Contig118:611408..614946+ (Heterosigma akashiwo CCMP452)
AGGATGATTCTATCAAGCACGAGATCCTCAAGTCGCATTTTATTCGCCAG
CGACTCTTTGCAATGTTAGAACAATACACGTGGGTGTTTGTTTGTTTTCA
ATGGAAAGTTGCCCCACCCTCTCTATAGTATTGTAGTTGCTTCTTGATAA
TGGCTAGGGCATGGTACACTATTCCTTGGTTTGCAAGCAATATACTTCTG
CTGCAATCTGCTATACATTCAAGTACAAAGTATTCCCGTACTATATAGCT
GTTTTGTTTTTCATCCTCTTGTCAACACCAAAATGATTGGCCACTCCTAT
ATTTCTTCATATTGTCATTGGTCATAGTACTACTCTTTCATCAGGGGATA
TACATACGCATATATTTTTGATCTGCGGGGGTACAAAAATACTATGTAGA
ACCAAATCCAGGTGACTTTTTTTTCTATCTCCCCGCGAGTTACTGTAGTA
TTGGGTGGCATATATCAGCAGGCCGTCAAAGAGCTTTTGGCGTTTAGATT
ATCACCCTCGGCTTGAAGTTTGACGCCCTGGAATTTCACAAAATTCTTTG
AGAGTTAAGAAATTTCTTGATGCCGGAGTTCAGAGAGGCACGAAGCACCT
CAAACTCAGCATCAAGCTGCTATTGCTGCTGTTGGAGAGTGGGGTGCCTT
AGATCGTTCCATCCGTATGCCCGGGATTCTAGCTCTACAGCATCTTTTGA
AAGTTACCAGGGAGTTGGGCGGAAGATGAACTGGTCTCAGTTGATGAAGG
TGGTGTGAGTGTGCTGCGGCCAGCCGAGCTGGTCTCCGAGATATGGGGGC
AGAGGGGTCATCAAACTCTAGTGTCAAGGTGCGAGCCATACCACGCCCTC
GCCCGTCCGGCAGCTGGCAGGTGAATCAAATGGCAGCTTGTTCTCTTCTA
CTTTCCGGTGAAGGAGGTAGTAGAGAAGGGTCAGGGTTGCGGAGTAGGGC
CACAGCACTCTCTTGAATTCTATATCAAGCTTCTTCAAATGGCTTTCTGC
AGCTCCCCAGTAGGCCAGGCTGCCATATTCAATCTTTGAGCGCACAAAAA
CAATATATAGGCCCTCATTATGCTCTTGCCATCAAGCATGTGGTTCATCC
TTTTGATTGCTCCCAAGCGCTTGCGGGCATCTGAGGCTATTGCTTGTATA
TATGTTGAGACCAGTTCCCCCTAGGATCTAAAGTCAAACCAAGAATTTCC
ATCTTCTGCCAAACAGGTACAACTGATGGAGGTCGGTGTCCAGCTCCCCC
CGTACTAGCCGCGCTGCCCGCTCCTCCCTCTCCACCTCTTTGACAAGAGT
GACATCATCAGCGTAAAAGTGGCACGCCTTCCGCAGAGCTGCCCGCAGCC
GTTGGGGAACGTTCCTCACAAAGAGGTCAAAGAGGAGACCAGACGGTGCC
CTGCGGAACGCCAGACTTGATGCCGGCATGCTCTGAGATCTCACCATTAG
AAGCAACAAAGAGCGCCCTGTCGGAGAGATAGCTCTCAAAGAGCTTGAAG
GCCTTGGCGTGCACCCGTACAGCCCAAAGATGTACGAGAAGCCCACGCCA
CCACAACTTGTCGACAGCCCCCTTGAAATCAAAGGCAGCTAGCCGCACAT
CCTTTTTTGCCTGAAGTGCTTGAGCTATCATCTGGTCTGCAAGTACGGCA
CCTATACCTCCAGAGTGCCAACCTGCTCTTTTTGGATGTATGGAGGTAGA
AACGCACTCAGTTGTTGAGGCATGAGAACCCTCTCAAATGTAGTGGCCAA
AGTTGGCAGCACTGAAACAGGCCGATAGTTTTGAGGGTCTATCACCTTCT
TGTCTTTTTTGTAGACAGGCGTGACCCTTGCCACCTTCCAACTCTTGGGG
AACTCAGCCTCCCTGGTCACTTTCTGAAACAGATCAGTCAGTGGGCGGGC
CAACTCTTTTGCACAGTGCTTGAGGAGACGTGGACTGACACCATCAGGGC
CAACCGACTTTAGCTCATTCAGAGAGCGGAGCACCTTCGCAACCATGGCA
CGTGTGAGCTTGGAGCTTCTCAGCCGCTTGACGCCGTCTGGCAGCTGCTC
AAGTGGTGGCACCTGCTTCTTCTCGTCCCCGGGAAGGCTCATTTTAGCAG
CAAAATAGTCCGCGAGGGCCTGAGGCGAGAGGGTCGCAGCCCACTTGAGC
TTGCTCATCCCAGAAAGATACTTTGTGAGCTTCTAGAAGTCCTCCCTGAG
GCCAGACCCTCTGGCAAGATGGATCTTAAGCCGGAGCACATGATGGCCAT
ATGCCTTTCTGCAGACCCGGTTGCAGATTTTGGTCTCCTTTCTGATAGCA
TGGGGGCAGCCACCATCAAGATGAGCACACTTCTTCCGATAACACGCCCT
CTCACACTTGGCATCCCACCAGGGCAAGGGCCTAGACAGCTTTGGAACTG
AACTTGGGGCGTACTCATCGGTCATCTCCTGTAGGTTGGCCGTCACTGTG
TCCACGGCCTCCTGCACTCCAAGACCCTCAAAGTTGAAGTTCGTTCTTTT
CACCTCTGTTATTAGTTCACCCCATCTGGCTTTCCCCCAATGGAACGCCT
TCCTTTGCTTGAGCGGCTCCTCTATTCCTACCAGGCCAAGATCAAGCTCA
GCATAGGTTTACGCTTGGGAAGACGTAGTAGTAGTAGAAGGGTCTATAGC
AGATAGGGGTCGGCTAGTTCTTGTTCTGCTGCTGGTTGGTCCCGTGAGCA
TTCTGAAAGGCTTTTTTTTTACTTGATTGTTTAACTATATTTAAATTCTA
ACAACACCTTCATTACAGTCATTTTTTGTCTATACCTTTTTTTTAGCAGC
ACAATGTGAAGGAAATAGGTTTGATCGGCTGCTATTGCTACCTCTGCTAT
TTTTTTTTTTTCATTAGTATCATAACATTTAATAATACAATAATACAAGT
GTATGATATAAAATATGCATTGTTCAATGAGCTGGTAGATCCGGAACATC
CGTTTCAGGTGGGAAGTGCATGGCAGGACTGGAAGGACCAGCTGGGGATC
TATGGTTGAGAATTCAGTTATGGTAGTAGTAGTAGATAGTGTTGGTGTTA
CAACAGAGGTACAATGACATTGGTATGGCTGGAGTGGTGTGTGATATTCG
TTCCTGTGTTTGTAGGGGGACTTGACTAGTGTTATTCTGATATGGCAGTA
AGAGGTGGAGGGGTCTCCTGATAGAAGCTAGGGGTACTGCCCCGAAAGCG
ATTTGATAGGGTAGACTGTAAACTAAACTTAACATCATCATCATCATCAT
ACCGTTCCCACAATCAACCCTGCTGCTCTCCTTGTTGTCTCTTTGTTATT
TGTTGGTGGCTCTCGTTGGCAAACAGATTTTCCCTTGCAGCTCGTCGCTT
TATTTGGACTATTTATGACCCTTCGGATTTTATAGATGCCATGAAAGAAG
CTGAAGAAGAAGATGTTCAGGTTTTAAACTCTGATAATTTGGACGTTCTT
GGATTGGGAAAATAGGCTAGATTCGGCCATCATCGTTGATTTATTATTGT
TGCATTTGACGATAATCATGCACGATGACTATTACATAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig118:611408..614946+

>mRNA_H-akashiwo_Contig118.15.1 ID=mRNA_H-akashiwo_Contig118.15.1|Name=mRNA_H-akashiwo_Contig118.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig118:611408..614946+ (Heterosigma akashiwo CCMP452)
ATGTTAGAACAATACACATTTTCCCTTGCAGCTCGTCGCTTTATTTGGAC
TATTTATGACCCTTCGGATTTTATAGATGCCATGAAAGAAGCTGAAGAAG
AAGATGTTCAGGTTTTAAACTCTGATAATTTGGACGTTCTTGGATTGGGA
AAATAG
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