mRNA_H-akashiwo_Contig1179.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1179.4.1
Unique NamemRNA_H-akashiwo_Contig1179.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1179.4.1 vs. uniprot
Match: A0A6S9DXQ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DXQ3_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 1.480e-16
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:  103 RKEISHKMLLNKHRVMEAMEQMKVTNKFVAIDLDXXXXXXXXXXXXXXXXXMDATVGGGQPF 288
            RKEISHKMLLNKHRVMEAMEQMKVTNKFVAIDLDXXXXXXXXXXXXXXXXXMDATVGGGQPF
Sbjct:  458 RKEISHKMLLNKHRVMEAMEQMKVTNKFVAIDLDXXXXXXXXXXXXXXXXXMDATVGGGQPF 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1179.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6S9DXQ3_HETAK1.480e-16100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1179contigH-akashiwo_Contig1179:74585..81734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size578
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.3108363-CDS-H-akashiwo_Contig1179:74584..746841681387107.3108363-CDS-H-akashiwo_Contig1179:74584..74684Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1179 74585..74684 +
1681387107.3224132-CDS-H-akashiwo_Contig1179:79012..791181681387107.3224132-CDS-H-akashiwo_Contig1179:79012..79118Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1179 79013..79118 +
1681387107.3363912-CDS-H-akashiwo_Contig1179:81363..814481681387107.3363912-CDS-H-akashiwo_Contig1179:81363..81448Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1179 81364..81448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.3456013-UTR-H-akashiwo_Contig1179:81448..817341681387107.3456013-UTR-H-akashiwo_Contig1179:81448..81734Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1179 81449..81734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1179.4.1prot_H-akashiwo_Contig1179.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1179 74585..81448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1179.4.1

>prot_H-akashiwo_Contig1179.4.1 ID=prot_H-akashiwo_Contig1179.4.1|Name=mRNA_H-akashiwo_Contig1179.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=97bp
GGRVCAAADAAGHPPAGRADGQAPPRAGAAGGKARKEISHKMLLNKHRVM
EAMEQMKVTNKFVAIDLDHDGKGKKKKKRDGDDDDMDATVGGGQPF*
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mRNA from alignment at H-akashiwo_Contig1179:74585..81734+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1179.4.1 ID=mRNA_H-akashiwo_Contig1179.4.1|Name=mRNA_H-akashiwo_Contig1179.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7150bp|location=Sequence derived from alignment at H-akashiwo_Contig1179:74585..81734+ (Heterosigma akashiwo CCMP452)
GGTGGACGAGTTTGTGCGGCTGCAGATGCTGCAGGCCATCCGCCTGCAGG
ACGAGCGGACGGACAAGCTCCGCCGCGAGCGGGAGCTGCTGGTGGAAAAG
GTGCGGCGGGCCGGGGACCCCCCCTCTGGTAACTACAGTCGCGGTGATGA
CGACGATGATGATGTTAGATTAGTTTATGAGATCTGGCCTTTCAAAACAC
TTTTGGACTGGGCCCTTTTGTAGCTTCTATGCGCAGACCCTTCCACTTCA
ATGTACCACTTCCGCCATGCCACTGCTCATCTATCATGTACACAAGAACA
AATATATTTTTCCAGTGCCTTCCAGTAACTACCAATATATCTTCGGCCCT
CTGACCCCCATTCTACGCTATCTGATCCGCCGTCCGTAAAAGAATTGTGA
GATAATTTAATAGCCCAAGATTAAACAATATAAATCAGCCAATCATATTT
TTTTTTAGGTGTCGAGGCTCTCGTCCTGGAAAAGAGGGGGCGATATGAAT
GGTCAAATCTTGGAGCTACGGACAGTTACAGCGAGCTGGAAGACAGTATT
TAGAGACTTATCAAGTTTGAACGGCATTTTGTGGAATTCTCAAAAATAGC
GTATTTTTGGTGAATTTTGAAATGGCCTACTTTACGGGTAAGTTTCCATC
AAATTCAAAATGATGAAATTCACGCAAAAAACACACCAATTTGTGACAGA
TTTTTCTCATCTAAATTTCTTTAAAAGACCAAATTTTTACAGAGAACTTT
ACAAACTTTTACTAACGCTTCCCGGATGTGTAGGAACTGGCCAATAGTGG
TAGCGATATGGTAGTTTGTATGCGGGTAGCAATAGCTGCAGGAAGAAGTT
GATGATGAAGAATTCGCTGACTGCTTCTGCAATTGTTTTCGCTTGCGTTC
GTAATAATTTGGTCTTTTTCCCACAAACAATTCTTGAATTGATTGGTGTG
ACAAAAAGCTAGTACTCGATCATTGGCCAAATTTGTAAAATTAAAGATTT
GATTTGAAAATTATGGATGTGAATTCGATTTTTCGGAACCATGACTGTTT
TTTCCAGAAAAAATCTCGATTATCATTGGCTCGTTGATTTTCACGCTGTT
GATTGGTGTAACTTAATTCATCTCGGCCTTCCTGAATTCAAACCCGAAAA
TGCAATTACACACAATGAACCAATGATAAAGCGTCACGAATTTAATTATC
TCACGGAGCCTTCTGAGCTAACCGTAAAAGAATTCAATTCATTTTTAGCA
AATGCAAAAGTCCCCTGTTTGAGAGTTTGTCTTGAAAACAACTAAATTAT
TGAATTTCGTTATCTTTTACGCTCACGGAGCCGCGATAGCGTGGAATGGG
TGTGAAAAACTCAACCTAAAATTCAATTTGCCGTCATAGTATCCGCCCAA
AGCTCGTCTATCCTCTGCTTCTTCTCCTCCCTCAATGGCTTTCCTGCTCC
TGCCAATGCTGCCGATCCCAGTGTTCCTGCTCTGCCTCCACGCTATCAAA
AACATCTGTGCACCCAGCTTTTTTTTTTTTCTCGTTCCTAACTTGCAATG
TGCCCCTCTCACATCCTGAGCCACAACCACTGTCTACTTGCAGGCCGCCT
TTGACATCTGAACAGTCGGACAGCGTAATCATTTTTTCTTCTACTTTAAC
ATTAATGTCTTTGACGTGGAACAGATCTGGCACTGGTCCAAGCTCGCTCA
AATCACAAACCACTAGGCAGATGGATGTATTCATTTTTATTGATTAGAAA
AAAAACTATCCTACAACACCCAATCTATGCCTGCATTTCGGGGACTCCAC
CCCATGACTGGCTCTACAACAGCCTTTGTCTTCTTCGGGTCACCTGTGAT
TGTGTGAATGGGAGTGGCTGCAGTATACTCCTCATCACAAACATGGAAAT
CGTAGCTGCATGACGAGCTACTCTCACAGAAGTCTTCATGTTTGATGACA
AGAAAAAACGAATCAATCAATATGATTTGCTCTTAGCTTTTACTGTTGAA
CCATCCACCAATCATAGCAGAGATTCCAGCTTTCTGGGCCTGTTGTGAGA
GTAGCTCGTCATGCAGCTGAGATTTTATAATGTTTTTGATGAGGAGTATA
CTGCAGCCACTCCCATTCACACAATCACAGGTGGCCTGAAGTAAACAAAG
GCTGTTGTAGAGCCAGTCATGGGGTGGAGTCTCCAAAATGCAGACGTAGT
CACCATAGATTGGGTGTTGTAGGATAGCTTTTTTTCTAATCAATAGAAAT
GAATGAATACATCTGCCTAGTGGTTTGTGGTTTGAGCGAGCTTGGACCAG
TGCCAGATCTGCTCCATGTCAAAGACATAAATGTCAAAGTAGAAGGAAAA
TGATTATATATAACCCCTGTCTTGAAAGAGACTACCACAAAAACCAATTT
AGACTGCGCTATCGACAAAGCTCAAGTCTCATTCTAGTGCGTCAAGCCTT
AATTTGAAGCCAAAACCCCCCTCGGTGGGTGCCATTTCGATGGAGCCAGA
GGTGAATAGAAGTAAGGCGACTCTCCTGGTAAAATAGCCCCTACGAGTGC
AACCCCTAAGCGTGCTCAATCACTGGCATCATATATATTATATGTAAATT
CATCCCCAAAAATCTACGTCTTGCATCTATAATATGCATAATATATATCT
CTGTGGTAACCTATGGTAACCTAATGAAACCTAAACATGAAACCCAAAAT
CTCAAATCAATAGAAAAGAAACATACCGAACCCAAAGGATCAAAACAAAA
ACAAAAACATCACATACTACTATCTCTGTAAAAGAATGGCTACCCCCTCA
CCATCCTTGAACTCTGAGCTCCTCCACTTCTTCCTGCAGCCCTAGTCCGC
AGATCCAACGCCCTGATTGAGAGCGAACTGCACACGGACACGCACGCAGT
TGGTGACCGTTGAGAGAGGCTTCTGCCACCTTGCCGAGAGCAGAGTATAG
CAATGCGCCTGAGGAAAGCCTGTAGAGTGGTGGGAAATACCCTTCACAGT
GACAATCAAGGGGCAGAAAATAGCAAAAGGCGCTCCTCCGCAGCAGTCTT
ATATTTCTTCACCTTTTCATGGGCAGAGGTATTGAGGGCATTCTGGTAAG
AGATGTGTTGGTTTGCACGTCCAGGGCTGCCAGCATGATGTATGATGCGG
GTGTCAAAAAGACAGTCACCCCTCACAGAAAAATTCGCGTTCACACCATC
GCTTCCTCCATCACTGACTCGCTGCGACGCCTCCCTCACCACCGACTCCC
AGGTGCAGTTTTTCCAGGCCTTCCTGCTCAGCTCCCCCCGAACATCCCGA
AGCTGGTCGTGGTCCCGCTTCACATTACCCCCCTCCATGCAGATAAGGGC
ATGATCTGCGGAGAAGCGCTTACCACGCCCATCACTCTTCTCGGTCAGCC
CCTGAAGGTCCCACCCGTGCATGAGGTACACCCTGTTGCGCCACTGCTGA
GCAGACAAGTCAAATTACTCCGGTTACCATGGACATCCACGGCGTGCCCT
TGGTATTTACCTGGCGGCCCTGCGCCTTTCGTCTCTGCACTGGCCTCAGC
CTGCTCAGAGTCTTGTCCGTGCCATCTACACAAATCATCTTGTAGCCGCG
TTGAATTTGAAGCGGGTAGCTCTGGGCCAGGGCTTCCTCACCTCCGCCAA
AGCCTGTTCTCGGTTGAGCCGGTTGAAGGGCATCGGCAGCATCCATCAAG
AACATATATATACTGTGTAGACAGCAAGGTAGTTGTTGGAGCCCGCTCCC
ATGGAGGGTGCGAAGCAAGGCATATAACTCTTAAATATACTTCGTACTAG
TACATAAATATAGTACTTTACCACAGAGACACCTACATAGGTGCAAGGCG
TAGATTGTTATTATGTATCACGGCCGATGGAAAAAAGTCGTACGAGGGTG
ATCCCAGCGCTACGTGCAGAGCTGACTCCTTCCCATAGAGTTTCATCTGT
CCATATCTCGGACAATTCTGAACGGATTTGGACAAAAAATACCTCGTTGA
GTAGCCCTCAACCAGCTCTATCTGGACTGAAGGCTCCGGTTAGATGAGGA
GGCAGTTTCAGAATATTTGATTGAGGGTCATATAAATCAAAATGTTGTTG
GTAGTACAAGTGCAAATCCTCGTGTCGTTAGAACGCATTATTTGTTTTTT
ACTTCTGATCCGGGTTCGAGTCCCGTCAGGTGCCCGCAGTGGTCACTCAT
CTCCGCTCGGTAAGCGCTCGCCGTGCGGAGTTTCGAGACGTTCCCACCTC
GTGCGATTAAATCCATCCACCGTGTATGGTGCATTTTGTGGGATATACTT
TTCATAGCTGGTGTCTTGCTATCCTCTTTTCTGCTGTTCCCAACAACACG
CTCGCTCCCGGCCACACACACACACACCCTTGCCCCCCCTCCAGATTACC
CCCCCCGCCGCGAACACCACGGGCGCAGCGCGCAAGGAGATCTCCCACAA
GATGCTCCTGAACAAGCACCGGGTCATGGAGGCCATGGAGCAAATGAAGG
TCACCAACAAGTTTGTCGCGATCGACCTGGACCAGTGAGTTTTATTTCCA
TTTGTTTTTGGATTTTTGGCTTAATTTGTGGTCCGTCGTACATTTCTTTC
CATGCGGGCGCGCTATATTTGACAGCTGGTATGGTTGGATTGAATATTAT
AATTATATATATTCATCGCAACAGTGTTCTCTGTCACAGTGTGTTGTTGT
TGTGTGTATTTTATTGTATACTGAGAAGATCTAAGAGGTCGCTCAGGGTC
AGGGTACCAGGAACATGGAACAATCCCAATCACGCCGTACTTCAACAACA
ACACATCTAGAAGGATTCGTGCCAGTTAGAAAGCAGCTTCAAAATCTGAT
AAAGTGGGTGGTAAGGCAGTGGATAAGTTCTGGGTTGATATCATTTTCAC
TTCATGTTAAAAGGTACAGGTGGGGGGAGAGGGGGGAGACGTGAATCAAG
AAGGGTGTGCAGTGGTTGACTGATATAGAGTAAGGCAATCTCAATATTGT
TTGCAGGCGAAGAACGACATCGACGATTCCTTTGTTCTTTTTTTTTTTGT
AGTTGTGCCACAAAAGAGCAAATCACGGTCGATGAAAAATATCATATGAG
GTTGCTCCCGGGGCGACGTGTGGAGATGACCCCCTTTTCATACTTCCCGT
AGAGTTTCATCTGCCCATATCTCGGCCAATTCCGAACGGATGTGAACAAA
AATATCTCGTTGAATAGCCCTCAACGAGCTCTGCCGAGACATGTGGCTCC
AGTTGGATGAGGAGGCAGTTTTAGAATGTTTGATTGAAGGTTGTATGACT
CAAATTGTGGTGGTACTGCAATTACAAATTGCCGTGTCGCTAGAGCATAA
CACTTGCTTTTTACTCCTTGTCCGGGTTGGAGTCCCGTCAAGTGCCCGCG
GTGGTCATTCGACTCCGCTCGGTAAGCGCTCACCGTGTGGAGTTTCGGGA
AGTCCCCACCTCGTACGATTAAATCCATCTACCGTGAATGGGTAATAATT
GGAAGAATGGGCAGAGGTTGAGTTGATCAGGTGGGATGATACTCGGTGCT
TGAACTCACCACAGAGGAGAAAGATCAAGAAATATATCATTACTTACATC
TCAGTGCCTACTATATCGGGCGAAGTGGGAGGCGGCTTGATGGGCCTGGG
AGCCGGTACATAGGTTTGTCCAGGCAGGGCCTTACTCTATGACCTAATTC
TGGGAGAGAAAGAGAATAGGGTGATGGGCTGTCCAGCCTTGCCGCAAACT
AAGACTATTACTTTTTGTTAAAAATGAGTCAAACCCCCAACAAAAACAGC
CCTGTTAAGTATAGTAGGTGTGTCACTCTGCACCTTTTATTTCTATTAGT
GAACTGGCCGATTAGGGGGTACTCTAAAATTCTTTTTTGTCGCCCAAAAA
AATGACGTTCGTAGCGCGCGCCATCTCTGTTGTTGTTGTCTCTTCTAAAC
TTCTTGTTCTTCTTTCCACCACGCCATCACGCTCGAAACTTTACTTTTTC
TCCTGTCTCTCCGTCATCATCACAACGAGGATATTGTCGACCCGTCGACC
CGTTGTTACCCACCCACCATCCTCATCCTTGTCCTCCTCCTCCAGGCCTC
CACCACCATCATCAGCATCAGCGCTAAGTGTAGTATAGTAGTAGTAGTGC
TAGAGGGGTCCGCCTCCTTCATGGAAAAGATGAACGGTTTAGCCTAATAG
CCAATAGCCAAAGCAGTTCAAAGTAATGTATTTGGGTATTCGTACGTCCA
TAGAAAAAAGATCTGCCTCAATTCGGCTCCATTTAGGCCCGAAACCCAAA
TGCTTGCATGGCCGCATTTTTCTTTAAAAAGTTTGTACGGTCGTTACTCA
GCAGCTAGCAAAGCTCATTGGACCAAAGGATCAGAGATGGTTCATACTAC
ATATGCAAAATAGACGGTGGTTGTGTGGTTCAGGATGTGAAGGACCGCAT
TGCAAGTAGAACGTATAAAAAAAAAAAATACGCTTAACATCATATAGATG
TATAGTACTACAATATAATATATATAAAATAATAAAATGAAATAGCTTTT
GTGATTTACCTCATGAAGGGGAAACCCGAAACATCGTAACCTTAAACAGA
CAGTGATAATGCTCCTTTGATTTATTCGCTGATTCGTCCGCATGATTTCA
TTATTGACATTTTAAAAATAATAATAATAAGTTTTACAACAACAACAACA
ACAGCAGTGTAAAATTTCAGGTTACTATGATGAATTTATTCTCCTGCTAT
TGTGTTCCCCTTTCTTTTTTATACGGCAGTGATGGGAAAGGTAAAAAGAA
AAAGAAGAGAGACGGGGATGATGATGACATGGATGCAACTGTTGGTGGAG
GACAACCGTTTTGATATTTTAAATATACATAGTAATATACACATACATAC
TACTACTACTATATATCACCACCTCCACCCTCTTACCTCTTACCTACCAC
CACTCCTATCATCATATTGATGATGTGAAAGAAGAATGAGATAGACCTGC
TGCTTGGTGGGCACAGATAATGATTACTTACTAAGTAGTAGCAGGGGGGG
GGGGCACCAGAGCAAGAACAAAAACAGTTATGATGTGATAGTCGTAAAAA
AGTACAACTGTAGTATAGTAGTAGTTTTAAACAGTTGTGCTTGCCACACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1179:74585..81734+

>mRNA_H-akashiwo_Contig1179.4.1 ID=mRNA_H-akashiwo_Contig1179.4.1|Name=mRNA_H-akashiwo_Contig1179.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=291bp|location=Sequence derived from alignment at H-akashiwo_Contig1179:74585..81734+ (Heterosigma akashiwo CCMP452)
GGTGGACGAGTTTGTGCGGCTGCAGATGCTGCAGGCCATCCGCCTGCAGG
ACGAGCGGACGGACAAGCTCCGCCGCGAGCGGGAGCTGCTGGTGGAAAAG
CGCGCAAGGAGATCTCCCACAAGATGCTCCTGAACAAGCACCGGGTCATG
GAGGCCATGGAGCAAATGAAGGTCACCAACAAGTTTGTCGCGATCGACCT
GGACCATGATGGGAAAGGTAAAAAGAAAAAGAAGAGAGACGGGGATGATG
ATGACATGGATGCAACTGTTGGTGGAGGACAACCGTTTTGA
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