mRNA_H-akashiwo_Contig1177.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1177.12.1
Unique NamemRNA_H-akashiwo_Contig1177.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A7R9UFC7_9STRA (ATP synthase subunit beta n=3 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9UFC7_9STRA)

HSP 1 Score: 428 bits (1101), Expect = 8.590e-142
Identity = 220/248 (88.71%), Postives = 235/248 (94.76%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMAAS 1485
            R+RVALTGL IAEYFRDQEGQDVLLFVDNIFRFTQA +EVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRMLDPRI+GEEHY+ AR +QKLLQDYK LQDIIAILGMDELSEDDKLTVARARKV+RF+SQPFHVAEVFTG  G+FV+L+DSIK F+EILSG HDE+PEGAFYMVGGI++V +KA  MAAS
Sbjct:  302 RARVALTGLAIAEYFRDQEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRIVGEEHYELARAIQKLLQDYKSLQDIIAILGMDELSEDDKLTVARARKVERFLSQPFHVAEVFTGTPGKFVALDDSIKAFKEILSGAHDELPEGAFYMVGGIDDVIQKAKDMAAS 549          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A7S2EIC6_TRICV (ATP synthase subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIC6_TRICV)

HSP 1 Score: 421 bits (1081), Expect = 1.780e-139
Identity = 213/245 (86.94%), Postives = 232/245 (94.69%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAM 1476
            R+RVALTGL IAEYFRD+EGQDVLLFVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMGALQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRML PR+IG+EHY+ AR  QKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPFHVAEVFTG  G+FVSLE +I+GF++I++G+HD++PEGAFYMVG ++EV+EKAA M
Sbjct:  254 RARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRMLTPRVIGDEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEQTIQGFKQIINGEHDDLPEGAFYMVGNVDEVKEKAAGM 498          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: D7FXG1_ECTSI (ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG1_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 3.270e-139
Identity = 220/249 (88.35%), Postives = 231/249 (92.77%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMAASA 1488
            R+RVALTGLTIAEYFRD EGQDVLLFVDNIFRFTQA +EVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPR+IG+EHY+TAR  QKLLQDYKGLQ+IIAILGMDELSEDDKLTVARARKVQRFMSQPF VAEVFTG KG FVSLED+IKGF+EILSG HD++PEGAFYMVG I  V  KA  +A SA
Sbjct:  259 RARVALTGLTIAEYFRDAEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGMLQERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQEIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMVGDIASVGVKAKQLAESA 507          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A1E7FRE4_9STRA (ATP synthase subunit beta n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7FRE4_9STRA)

HSP 1 Score: 419 bits (1076), Expect = 1.080e-138
Identity = 215/245 (87.76%), Postives = 229/245 (93.47%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAM 1476
            R+RVALTGL IAEYFRD+EGQDVLLFVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRMLDPR+IG EHY+ AR  QKLLQDYKGLQDIIAILGMDELSEDDKLTV+RARKV +FMSQPFHVAEVFTG  G+FVSLEDSIKGF+EI+SG +D +PE AFYMVGGI++V+EKAA M
Sbjct:  256 RARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGGLQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGNEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVMKFMSQPFHVAEVFTGTAGKFVSLEDSIKGFKEIISGDYDHLPELAFYMVGGIDDVKEKAANM 500          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A7S3HGV8_9STRA (ATP synthase subunit beta n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S3HGV8_9STRA)

HSP 1 Score: 418 bits (1075), Expect = 3.750e-138
Identity = 220/249 (88.35%), Postives = 229/249 (91.97%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMAASA 1488
            R+RVALTGL IAEYFRDQEGQDVLLFVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMG LQERITST  GSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPR+IGE HYQTAR  QKLLQDYKGLQDIIAILGMDELSEDDKLTVARARK QRFMSQPFHVAEVFTG  GRFV LED+IKGF+EILSG+ D +PE AFYM G I EV+E AA +AA+A
Sbjct:  282 RARVALTGLAIAEYFRDQEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTGVGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGEVHYQTARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKAQRFMSQPFHVAEVFTGRGGRFVQLEDTIKGFQEILSGKLDSLPESAFYMSGNIEEVKETAAKLAATA 530          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A7S2SJ94_9STRA (ATP synthase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ94_9STRA)

HSP 1 Score: 417 bits (1072), Expect = 5.600e-138
Identity = 217/246 (88.21%), Postives = 228/246 (92.68%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMA 1479
            R+RVALTGLTIAEYFRD+EGQDVLLFVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMGALQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IA LGIYPAVDPLDSTSRMLDPR++G+ HY+ AR  QKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPF VAEVFTG KG+FVSLED+IKGF EIL+G+HD+IPE AFYM G I EV E A AMA
Sbjct:  264 RARVALTGLTIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTQKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPRVLGDTHYEMARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGKFVSLEDTIKGFGEILAGEHDDIPEAAFYMKGDIAEVLESAKAMA 509          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A1Z5JNL5_FISSO (ATP synthase subunit beta n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5JNL5_FISSO)

HSP 1 Score: 416 bits (1070), Expect = 8.110e-138
Identity = 214/246 (86.99%), Postives = 227/246 (92.28%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMA 1479
            R+RVALTGL IAEYFRD+EGQDVLLFVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMGALQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRMLDPR+IG+ HY  AR  QKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPFHVAEVFTG  G+FVSLED+I GF EI+SG +D +PEGAFYMVG I +V+ KA+ MA
Sbjct:  254 RARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGQRHYDVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEDTINGFSEIISGAYDSLPEGAFYMVGNIEDVKAKASTMA 499          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A836CJ45_9STRA (ATP synthase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ45_9STRA)

HSP 1 Score: 416 bits (1069), Expect = 1.390e-137
Identity = 218/248 (87.90%), Postives = 227/248 (91.53%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMAAS 1485
            R+RVALTGLTIAEYFRD EGQDVLLFVDNIFRFTQA +EVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIG+EHY+ AR  QKLLQDYK LQDIIAILGMDELSEDDKLTVARARKVQRFMSQPF VAEVFTG KG FV LED+I GF+EILSG HD++PE AFYMVG I  V  KA  +A S
Sbjct:  258 RARVALTGLTIAEYFRDAEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGDEHYKVARATQKLLQDYKSLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVKLEDTISGFKEILSGAHDDLPEAAFYMVGDITSVVAKAKKLAES 505          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A522X3H2_9PROT (F0F1 ATP synthase subunit beta (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522X3H2_9PROT)

HSP 1 Score: 405 bits (1042), Expect = 2.840e-137
Identity = 204/249 (81.93%), Postives = 230/249 (92.37%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMAASA 1488
            R+RVAL+GLT+AEYFRD EGQDVL FVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMGALQERITST KGSITSVQA+YVPADDLTDPAPAT+FAHLDATTVL+RQIAELGIYPAVDPLDSTSR+LDPR++G +HYQTAR+VQ++LQ YK LQDIIAILGMDELSE+DKL V+RARK+QRF+SQPFHVAE+FTG  G+ VSLE++IKGF+ I+SG++D +PE AFYMVGGI EV EKA  MAA A
Sbjct:    3 RARVALSGLTVAEYFRDVEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRQIAELGIYPAVDPLDSTSRVLDPRVVGNDHYQTARDVQRILQTYKSLQDIIAILGMDELSEEDKLVVSRARKIQRFLSQPFHVAEIFTGSPGKLVSLEETIKGFKAIVSGEYDHLPESAFYMVGGIEEVVEKAKKMAADA 251          
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Match: A0A2S6RB45_9PROT (ATP-synt_ab domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha9_Bin4 TaxID=2013099 RepID=A0A2S6RB45_9PROT)

HSP 1 Score: 405 bits (1040), Expect = 4.950e-136
Identity = 203/246 (82.52%), Postives = 228/246 (92.68%), Query Frame = 1
Query:  742 RSRVALTGLTIAEYFRDQEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSIKGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMA 1479
            R+RV L+GLT+AEYFRD+EGQDVL FVDNIFRFTQA SEVSALLGRIPSAVGYQPTLATDMGALQERITST KGSITSVQA+YVPADDLTDPAPAT+F+HLDATTVLSRQIAELGIYPAVDPLDSTSR+LDPRI+GEEHY+ AREVQ++LQ YK LQDIIAILGMDELSE+DKL VARARK+QRF+SQPFHVAEVFTG +G+FV ++D+IKGF+E+ SG++DEIPE AFYMVG I E  EK+  MA
Sbjct:   64 RARVGLSGLTMAEYFRDEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGSITSVQAIYVPADDLTDPAPATSFSHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPRILGEEHYEVAREVQRILQSYKSLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGFQGKFVDIKDTIKGFKELCSGKYDEIPEAAFYMVGTIEEALEKSKKMA 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1177.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UFC7_9STRA8.590e-14288.71ATP synthase subunit beta n=3 Tax=Pinguiochrysidac... [more]
A0A7S2EIC6_TRICV1.780e-13986.94ATP synthase subunit beta n=1 Tax=Trieres chinensi... [more]
D7FXG1_ECTSI3.270e-13988.35ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID... [more]
A0A1E7FRE4_9STRA1.080e-13887.76ATP synthase subunit beta n=6 Tax=Bacillariophyta ... [more]
A0A7S3HGV8_9STRA3.750e-13888.35ATP synthase subunit beta n=2 Tax=Eukaryota TaxID=... [more]
A0A7S2SJ94_9STRA5.600e-13888.21ATP synthase subunit beta n=1 Tax=Rhizochromulina ... [more]
A0A1Z5JNL5_FISSO8.110e-13886.99ATP synthase subunit beta n=2 Tax=Bacillariophycid... [more]
A0A836CJ45_9STRA1.390e-13787.90ATP synthase subunit beta n=1 Tax=Tribonema minus ... [more]
A0A522X3H2_9PROT2.840e-13781.93F0F1 ATP synthase subunit beta (Fragment) n=1 Tax=... [more]
A0A2S6RB45_9PROT4.950e-13682.52ATP-synt_ab domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1177contigH-akashiwo_Contig1177:310818..313063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps41256
PFAMsATP-synt_ab,ATP-synt_ab_N
Model size1556
Max annot lvl2836|Bacillariophyta
KEGG koko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.31e-105
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota,2XBRR@2836|Bacillariophyta
EC3.6.3.14
DescriptionProduces ATP from ADP in the presence of a proton gradient across the membrane
Cds size570
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1177.12.1prot_H-akashiwo_Contig1177.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1177 312429..312998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.9490018-UTR-H-akashiwo_Contig1177:310817..3108521681387106.9490018-UTR-H-akashiwo_Contig1177:310817..310852Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1177 310818..310852 +
1681387106.9602263-UTR-H-akashiwo_Contig1177:311008..3110941681387106.9602263-UTR-H-akashiwo_Contig1177:311008..311094Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1177 311009..311094 +
1681387106.9773822-UTR-H-akashiwo_Contig1177:311285..3114681681387106.9773822-UTR-H-akashiwo_Contig1177:311285..311468Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1177 311286..311468 +
1681387106.9965627-UTR-H-akashiwo_Contig1177:311652..3117811681387106.9965627-UTR-H-akashiwo_Contig1177:311652..311781Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1177 311653..311781 +
1681387107.0047245-UTR-H-akashiwo_Contig1177:311940..3124281681387107.0047245-UTR-H-akashiwo_Contig1177:311940..312428Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1177 311941..312428 +
1681387107.0256903-UTR-H-akashiwo_Contig1177:312998..3130631681387107.0256903-UTR-H-akashiwo_Contig1177:312998..313063Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1177 312999..313063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.0162368-CDS-H-akashiwo_Contig1177:312428..3129981681387107.0162368-CDS-H-akashiwo_Contig1177:312428..312998Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1177 312429..312998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1177.12.1

>prot_H-akashiwo_Contig1177.12.1 ID=prot_H-akashiwo_Contig1177.12.1|Name=mRNA_H-akashiwo_Contig1177.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=190bp
MGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQ
IAELGIYPAVDPLDSTSRMLDPRIIGEEHYQTAREVQKLLQDYKGLQDII
AILGMDELSEDDKLTVARARKVQRFMSQPFHVAEVFTGIKGRFVSLEDSI
KGFREILSGQHDEIPEGAFYMVGGINEVQEKAAAMAASA*
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mRNA from alignment at H-akashiwo_Contig1177:310818..313063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1177.12.1 ID=mRNA_H-akashiwo_Contig1177.12.1|Name=mRNA_H-akashiwo_Contig1177.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2246bp|location=Sequence derived from alignment at H-akashiwo_Contig1177:310818..313063+ (Heterosigma akashiwo CCMP452)
CCTTGCCAGGGGTGCCATCAAAGAGCAGGCCAAAGGTGGGCCTTCAAAAT TTTACCACGACTTGTTTGTTTTTTGTTGCCCATCGGCTCTAAGGGGGGGG GGGCGCGTAAAAAGTACCCCTTGTTCTTTTTTCAGGTTTTTCATTTTGTA AGAAAATTCGGAACATTTTTATTTTGATGAATGGTTTGTAGGTCTGACTC GTGGGTTTAAATCCTCTGCCGCCCTGTGGGGAAATGGACGGATCACCCAG GTTATCGGTGCCGTCGTTGATGTCCAGGTAAAGTGGCTTATTCTCAGAAG ACCTTTCTGCCAGCACATTAGTGTGATTTTTAAATATCATACTTCATGGT TGGGTGTTAGATAAAATTTTAAACAAAAATATACTCCGTACTTTTTTGTC GAGCCAAATAGGATTAAAGGGCTTGATCTAAAAAAATATTGCTTCTTTGT TTTCCATCGCAAATTCAGTTCGACAGCGAGCCTCCCCCGATTCTTAACTC TCTGGAGGTAACTGTCGGCAAGGACAGTCCCAGACTTGTTCTCGAGGTGG CCCAGCATCTGGGTGAGAATGTGGTGAGAACCATTGCCATGGACTCTACT GACGGTCTTGTGCGTGGCCAGGAGTGCAAGGACACCGGCAAGCCCATCTT GGTGAGTTTCTAACCCCTACACAATTGACTCCTATTCGAAAAATCTATGC CTTTTTCGTGGACATGGAGTGTGTTATGAATACCACTACTTCACTGTGGA TGACATCACCCAAAGCCAGATTAAAAATGAATTCCACAAAAAATAGTTTG TGTGTGTTTCCTGCCCCATTTTTTTTTACATATAGATTCCTGTGGGCCCT GAGACTCTTGGCCGCATCATGAACGTTATTGGTGAGCCCGTTGATGAGCG CGGCCCCATCACCACCAAGGTCAAGGCTCCTATCCACAACACTGCCCCCC TCTTCACTGAGCAGGTCAGTTCCCCGTCAGCACATTGAATGAACACAATT ATACAAATAAATAATTTATTATACAGCCATGACATGTGTTTTTTTGTATA ATAGTCCACACAACCTTCTGCCAGATACCCAGCAAAGTATCTGACTAGTT GTTGCCCCCCATTTTCTTCACAGGGCAAGTCTCAGGAGATTCTTGTAACT GGTATTAAGGTTGTGGATCTTCTCGCCCCTTATGCCAAGGGTGGTAAGAT TGGGCTGTTCGGCGGTGCTGGTGTCGGCAAGACTGTTGTCATTATGGAGC TCATCAACAACATTGCTACCAACCATGGCGGTTACTCCGTGTTTGCCGGC GTGGGCGAGAGAACCCGCGAGGGTAACGATCTCTACCACGAAATGATTGA GGGCGGCGTCATCAAGATCTCGGGCGATTCCACCGAGGGCTCCAAGGCCG CCCTGGTGTACGGGCAGATGAACGAGCCCCCCGGAGCCGCGTGGCCCTCA CGGGGCTGACCATCGCGGAGTACTTCCGCGACCAGGAGGGCCAGGACGTG CTGCTCTTCGTGGACAACATCTTCCGCTTCACCCAGGCCTGCTCGGAGGT GTCCGCCCTGCTGGGCCGCATCCCCTCCGCCGTGGGCTACCAGCCCACCC TGGCCACCGATATGGGCGCCCTACAGGAGCGCATCACCTCCACCACCAAG GGGTCCATCACCTCGGTGCAGGCCGTGTACGTGCCGGCCGATGATTTGAC CGACCCCGCCCCCGCCACCACCTTCGCGCATCTGGACGCCACCACGGTGC TGTCGCGCCAGATCGCCGAGCTGGGCATCTACCCCGCCGTGGACCCCCTG GACTCCACCTCGCGCATGCTCGACCCCCGCATCATCGGCGAGGAGCACTA CCAGACCGCCCGCGAGGTGCAGAAGCTGCTCCAGGACTACAAGGGCCTGC AGGACATCATTGCCATCCTGGGCATGGACGAGCTGTCAGAAGATGACAAG CTGACGGTGGCCCGCGCACGCAAGGTGCAGCGCTTCATGTCGCAGCCCTT CCACGTGGCCGAGGTGTTCACAGGCATCAAGGGCCGCTTCGTTTCCCTGG AGGACTCCATCAAGGGCTTCCGGGAGATCCTCTCCGGCCAGCACGATGAG ATCCCCGAGGGTGCTTTCTACATGGTGGGCGGCATCAACGAGGTGCAGGA GAAGGCCGCCGCCATGGCCGCGTCTGCCTAGGCGCTAGCCAAGGCACGAT GTTTGGGCTGTATGCCGCTTTGCCTGGCTCAACTTGCACAGTGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1177:310818..313063+

>mRNA_H-akashiwo_Contig1177.12.1 ID=mRNA_H-akashiwo_Contig1177.12.1|Name=mRNA_H-akashiwo_Contig1177.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=570bp|location=Sequence derived from alignment at H-akashiwo_Contig1177:310818..313063+ (Heterosigma akashiwo CCMP452)
ATGGGCGCCCTACAGGAGCGCATCACCTCCACCACCAAGGGGTCCATCAC
CTCGGTGCAGGCCGTGTACGTGCCGGCCGATGATTTGACCGACCCCGCCC
CCGCCACCACCTTCGCGCATCTGGACGCCACCACGGTGCTGTCGCGCCAG
ATCGCCGAGCTGGGCATCTACCCCGCCGTGGACCCCCTGGACTCCACCTC
GCGCATGCTCGACCCCCGCATCATCGGCGAGGAGCACTACCAGACCGCCC
GCGAGGTGCAGAAGCTGCTCCAGGACTACAAGGGCCTGCAGGACATCATT
GCCATCCTGGGCATGGACGAGCTGTCAGAAGATGACAAGCTGACGGTGGC
CCGCGCACGCAAGGTGCAGCGCTTCATGTCGCAGCCCTTCCACGTGGCCG
AGGTGTTCACAGGCATCAAGGGCCGCTTCGTTTCCCTGGAGGACTCCATC
AAGGGCTTCCGGGAGATCCTCTCCGGCCAGCACGATGAGATCCCCGAGGG
TGCTTTCTACATGGTGGGCGGCATCAACGAGGTGCAGGAGAAGGCCGCCG
CCATGGCCGCGTCTGCCTAG
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