mRNA_H-akashiwo_Contig1176.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1176.2.1
Unique NamemRNA_H-akashiwo_Contig1176.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1176.2.1 vs. uniprot
Match: A0A7S3UTU5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTU5_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 8.250e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 QALSLQGAREALMGEKQKRKDSEKISRLEHMSAVNARRKQNLIQQQTKREEM 156
            QALSLQGAREALMGEKQKRKDSEKISRLEHMSAVNARRKQNLIQQQTKREEM
Sbjct:  141 QALSLQGAREALMGEKQKRKDSEKISRLEHMSAVNARRKQNLIQQQTKREEM 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1176.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UTU5_HETAK8.250e-22100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1176contigH-akashiwo_Contig1176:212390..212689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.5191393-CDS-H-akashiwo_Contig1176:212391..2124871681387106.5191393-CDS-H-akashiwo_Contig1176:212391..212487Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1176 212392..212487 -
1681387106.527775-CDS-H-akashiwo_Contig1176:212629..2126891681387106.527775-CDS-H-akashiwo_Contig1176:212629..212689Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1176 212630..212689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1176.2.1prot_H-akashiwo_Contig1176.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1176 212392..212689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1176.2.1

>prot_H-akashiwo_Contig1176.2.1 ID=prot_H-akashiwo_Contig1176.2.1|Name=mRNA_H-akashiwo_Contig1176.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
QALSLQGAREALMGEKQKRKDSEKISRLEHMSAVNARRKQNLIQQQTKRE
EM
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mRNA from alignment at H-akashiwo_Contig1176:212390..212689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1176.2.1 ID=mRNA_H-akashiwo_Contig1176.2.1|Name=mRNA_H-akashiwo_Contig1176.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1176:212390..212689- (Heterosigma akashiwo CCMP452)
CAAGCATTATCACTTCAAGGAGCGAGAGAAGCCCTGATGGGTGAAAAGCA
GAAGAGAAAGGTGAGTCCTTCAATGAAATTCATACCTCAGCGCATGGCAC
ATGACCCACTGTAAAATAGACAATTTCAAGAATTATAATCCCTCAGATTG
TGAAAAGAATATAAGACCCATATTTTATTATAAACCATATATATCTCACC
AGGATTCTGAGAAAATAAGCAGATTGGAGCATATGAGTGCTGTCAATGCA
AGAAGGAAACAAAACTTGATTCAACAGCAGACTAAAAGGGAGGAAATGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1176:212390..212689-

>mRNA_H-akashiwo_Contig1176.2.1 ID=mRNA_H-akashiwo_Contig1176.2.1|Name=mRNA_H-akashiwo_Contig1176.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1176:212390..212689- (Heterosigma akashiwo CCMP452)
CAAGCATTATCACTTCAAGGAGCGAGAGAAGCCCTGATGGGTGAAAAGCA
GAAGAGAAAGGATTCTGAGAAAATAAGCAGATTGGAGCATATGAGTGCTG
TCAATGCAAGAAGGAAACAAAACTTGATTCAACAGCAGACTAAAAGGGAG
GAAATG
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