mRNA_H-akashiwo_Contig1174.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1174.1.1
Unique NamemRNA_H-akashiwo_Contig1174.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 344 bits (882), Expect = 4.360e-115
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            LLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLW YWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGC+YEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC
Sbjct:  120 LLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 287          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 344 bits (882), Expect = 8.620e-113
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            LLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLW YWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGC+YEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC
Sbjct:  120 LLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 287          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 258 bits (658), Expect = 1.510e-83
Identity = 121/149 (81.21%), Postives = 133/149 (89.26%), Query Frame = 1
Query:   58 MVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            MV KKTGETRMCLDLR+LNAITTP+KFPLPT REMFD L  AYYF+SLDMLW YWSVPLR+ DK KTAFTVRN+KYAFNVMCFGLTNAPATFSHLVNKVFQGC+++FALCFLDDVLCY+  +F+LHL  L +IF RM  ANLKFKLPKC
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKC 149          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A0P5XPI7_9CRUS (Polyprotein of retroviral origin (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5XPI7_9CRUS)

HSP 1 Score: 154 bits (390), Expect = 2.010e-42
Identity = 77/168 (45.83%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            +L   ++ ES S F A IVMV KK GE RMC+D RALN IT   K+PLP   +  D L  ++YF+ LD+L  YW + + E DK KTAF     +Y FN M FGLTNAP+TF   +N + +   Y+FAL +LDD++ +S  + T H+ HL  +F+ ++ A LK K  KC
Sbjct:  123 MLSNKILRESHSPFAAAIVMVPKKDGEMRMCIDYRALNKITVKDKYPLPRIDDTIDALCGSFYFSILDLLSGYWQIEIEESDKHKTAFICEFGQYEFNRMPFGLTNAPSTFQRAMNNILKTVLYKFALVYLDDIIVFS-NSITDHVTHLEAVFRLLKQAGLKLKRKKC 289          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A0P5U4C5_9CRUS (Polyprotein of retroviral origin (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5U4C5_9CRUS)

HSP 1 Score: 149 bits (375), Expect = 5.320e-42
Identity = 75/164 (45.73%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFK 492
            +L   ++ ES S F A IVMV KK GE RMC+D RALN IT   K+PLP   +  D L  + YF+ LD+L  YW + + E DK KTAF     +Y FN M FGLTNAP+TF   +N + +   Y+FAL +LDD++ +S  + T H+ HL  +F+ ++ A LK K
Sbjct:   62 MLSNKILRESHSPFAAAIVMVPKKDGEMRMCIDYRALNKITVKDKYPLPRIDDTIDALCGSVYFSILDLLSDYWQIEIEESDKHKTAFICEFGQYEFNRMPFGLTNAPSTFQRAMNNILKTVLYKFALVYLDDIIVFS-NSITDHVTHLEAVFRLLKQAGLKLK 224          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A6B0VG58_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VG58_IXORI)

HSP 1 Score: 157 bits (398), Expect = 1.550e-41
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            +LK+GVI  S S+F++P+V+V KK G  R C+D R LN IT    +P+P   +  D+L  A YF+SLD+   YW +P+ E DK KTAF   +  Y FNVM FGL NAPATF  +++ + +G +++  LC+LDD++ +S  NF  HL  LSQ+   + AANL+    KC
Sbjct:   59 MLKKGVIRPSCSSFSSPVVLVKKKDGGIRFCIDYRELNEITRKDLYPMPRIDDALDSLQGAEYFSSLDLRSGYWQIPVNEEDKEKTAFVTPDGLYEFNVMPFGLCNAPATFERMIDNILRGLKWKTCLCYLDDIVIFSS-NFEEHLERLSQVLSCLSAANLQLNTKKC 225          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A015J1N0_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J1N0_RHIIW)

HSP 1 Score: 151 bits (382), Expect = 4.260e-41
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            +L+QG+I  S+S ++ P+V+V KK G+ R C++ + LN IT    +PLP   E+ D+L +A +FT+LD+   YW + +R  D+ KTAF  +   Y F VM FGL NAPATF   ++KV  G + +F L +LDDV+ YS + F  H+ HL ++  R+R ANL+ K  KC
Sbjct:    1 MLEQGLIKPSTSPWSFPVVVVKKKNGKLRFCVNYKPLNDITKKDNYPLPRIDELLDSLQDAQWFTTLDLASGYWQIKVRAEDQEKTAFITKFGTYEFKVMPFGLCNAPATFQRTMDKVLHGIKEKFVLVYLDDVIIYS-KTFKDHIQHLEEVLNRIRKANLRLKAEKC 167          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A015L6B7_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L6B7_RHIIW)

HSP 1 Score: 145 bits (365), Expect = 5.770e-41
Identity = 73/165 (44.24%), Postives = 101/165 (61.21%), Query Frame = 1
Query:   10 QGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            QG+I +S+S + +P+V+V KK GE R+C+D R LNA+T    +PLP   +M ++ + A +FT+LD+   YW V +   D  KTAF      Y F VM FGL  AP TF  L+N++ Q    +F   +LDDV+ YS      HL HL Q+F+ +R ANLK KL KC
Sbjct:    4 QGLIRKSASPWASPVVIVDKKGGEKRLCIDYRKLNAVTKADAYPLPRIDDMLESFSNATWFTTLDLASGYWQVAMDPADIEKTAFITPFGLYKFLVMPFGLAYAPGTFQRLMNRILQEYLGKFVAVYLDDVIIYSKGTLEQHLDHLRQVFETLRRANLKIKLKKC 168          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A821ZGR2_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821ZGR2_9BILA)

HSP 1 Score: 148 bits (373), Expect = 6.160e-41
Identity = 71/168 (42.26%), Postives = 106/168 (63.10%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            LLKQG+I  S S +++P+V+V KK G  R C+    LNAIT    FPLP   ++FD L+++++FT+LD    Y+ VPL + D+SKT F+ R+ +Y F V+  G+TN P TF  +VN +     ++++L +LDDV+ YS  +F  HL HL  I  R+  AN +  + KC
Sbjct:   23 LLKQGIIEPSISPWSSPVVLVKKKDGTHRFCVYFTKLNAITIRDHFPLPRIDDIFDQLSDSHFFTTLDFKSGYFQVPLDKRDRSKTTFSTRDSRYQFTVLPQGITNGPPTFQRIVNNILGNSRWKYSLAYLDDVIIYSS-SFNEHLEHLDDILTRLNTANFRLNIDKC 189          
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Match: A0A392PP11_9FABA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PP11_9FABA)

HSP 1 Score: 144 bits (363), Expect = 9.140e-41
Identity = 74/168 (44.05%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            +L+QG+I  S+S F++PI++V KK G  R C D RALN IT    FP+PT  E+ D L  A YF+ LD+   Y  + ++  D+ KTAF   +  Y + VM FGLTNAPATF  L+NK+FQ    +F L F DD+L YS  ++  HL HL  + + ++   L  +L KC
Sbjct:    5 MLEQGIIQPSNSPFSSPILLVKKKDGSWRFCTDYRALNTITVKDSFPMPTVDELLDELYGAMYFSKLDLRSGYHQILVKPEDRCKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQSALRKFVLVFFDDILVYST-SWREHLIHLESVLQTLQHHQLYARLSKC 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1174.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK4.360e-11598.21Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK8.620e-11398.21Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK1.510e-8381.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P5XPI7_9CRUS2.010e-4245.83Polyprotein of retroviral origin (Fragment) n=1 Ta... [more]
A0A0P5U4C5_9CRUS5.320e-4245.73Polyprotein of retroviral origin (Fragment) n=1 Ta... [more]
A0A6B0VG58_IXORI1.550e-4145.24RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
A0A015J1N0_RHIIW4.260e-4143.45Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
A0A015L6B7_RHIIW5.770e-4144.24Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
A0A821ZGR2_9BILA6.160e-4142.26Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A392PP11_9FABA9.140e-4144.05Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1174contigH-akashiwo_Contig1174:14408..14911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009797113.1
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve
Model size504
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.2e-39
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta,44PGP@71274|asterids
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size504
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.093626-CDS-H-akashiwo_Contig1174:14407..149111681387106.093626-CDS-H-akashiwo_Contig1174:14407..14911Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1174 14408..14911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1174.1.1prot_H-akashiwo_Contig1174.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1174 14408..14911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1174.1.1

>prot_H-akashiwo_Contig1174.1.1 ID=prot_H-akashiwo_Contig1174.1.1|Name=mRNA_H-akashiwo_Contig1174.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=168bp
LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPT
AREMFDNLAEAYYFTSLDMLWVYWSVPLREGDKSKTAFTVRNRKYAFNVM
CFGLTNAPATFSHLVNKVFQGCEYEFALCFLDDVLCYSPRNFTLHLYHLS
QIFKRMRAANLKFKLPKC
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mRNA from alignment at H-akashiwo_Contig1174:14408..14911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1174.1.1 ID=mRNA_H-akashiwo_Contig1174.1.1|Name=mRNA_H-akashiwo_Contig1174.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig1174:14408..14911+ (Heterosigma akashiwo CCMP452)
TTACTGAAGCAAGGAGTAATCTCAGAGAGTTCAAGTAACTTCAACGCACC AATAGTAATGGTGGCTAAGAAGACTGGGGAGACACGAATGTGTTTGGACC TACGAGCTCTGAACGCTATTACAACGCCATCAAAGTTCCCTTTACCAACA GCCAGGGAAATGTTTGATAATTTGGCGGAGGCATACTACTTTACCAGCTT GGACATGCTATGGGTATACTGGAGCGTTCCGCTGAGAGAAGGAGACAAGT CCAAGACAGCTTTTACTGTGAGGAACAGAAAGTATGCATTCAACGTGATG TGCTTTGGATTAACAAATGCACCAGCTACTTTCAGCCATTTGGTGAACAA GGTTTTTCAGGGGTGTGAGTATGAGTTTGCACTATGTTTTCTGGACGACG TACTGTGCTACTCACCCAGGAACTTCACATTACATCTGTACCATTTGAGT CAGATATTCAAGAGGATGAGAGCAGCCAACTTGAAGTTCAAATTGCCCAA ATGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1174:14408..14911+

>mRNA_H-akashiwo_Contig1174.1.1 ID=mRNA_H-akashiwo_Contig1174.1.1|Name=mRNA_H-akashiwo_Contig1174.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig1174:14408..14911+ (Heterosigma akashiwo CCMP452)
TTACTGAAGCAAGGAGTAATCTCAGAGAGTTCAAGTAACTTCAACGCACC
AATAGTAATGGTGGCTAAGAAGACTGGGGAGACACGAATGTGTTTGGACC
TACGAGCTCTGAACGCTATTACAACGCCATCAAAGTTCCCTTTACCAACA
GCCAGGGAAATGTTTGATAATTTGGCGGAGGCATACTACTTTACCAGCTT
GGACATGCTATGGGTATACTGGAGCGTTCCGCTGAGAGAAGGAGACAAGT
CCAAGACAGCTTTTACTGTGAGGAACAGAAAGTATGCATTCAACGTGATG
TGCTTTGGATTAACAAATGCACCAGCTACTTTCAGCCATTTGGTGAACAA
GGTTTTTCAGGGGTGTGAGTATGAGTTTGCACTATGTTTTCTGGACGACG
TACTGTGCTACTCACCCAGGAACTTCACATTACATCTGTACCATTTGAGT
CAGATATTCAAGAGGATGAGAGCAGCCAACTTGAAGTTCAAATTGCCCAA
ATGC
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