mRNA_H-akashiwo_Contig117.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.6.1
Unique NamemRNA_H-akashiwo_Contig117.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig117.6.1 vs. uniprot
Match: A0A7S3YCA7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCA7_HETAK)

HSP 1 Score: 125 bits (313), Expect = 1.130e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 2 
Query:    2 KWVMYGLPVIILGLALFSVLMSLSHLQDCSPGEESAKEKTLRMAQMEKRLMTLEQEMLENSLLLEQFLQ 208
            KWVMYGLPVIILGLALFSVLMSLSHLQDCSPGEESAKEKTLRMAQMEKRLMTLEQEMLENSLLLEQFLQ
Sbjct:   12 KWVMYGLPVIILGLALFSVLMSLSHLQDCSPGEESAKEKTLRMAQMEKRLMTLEQEMLENSLLLEQFLQ 80
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BLAST of mRNA_H-akashiwo_Contig117.6.1 vs. uniprot
Match: A0A7S2C7Q7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7Q7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.770e-6
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:   14 YGLPVIILGLALFSVLMSLSHLQDCSPGEESAKEKTLRMAQMEKRLMTLEQEMLENSLLLEQFL 205
            Y  P+ +L LAL  VL+++ H   C  G ESA E  L+   +EKRL+ LEQE L+N++L E+F+
Sbjct:   19 YATPLFLLALALVLVLVNVKHSMLCQAGGESAAEAILQRQALEKRLLALEQETLQNNMLFEKFI 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3YCA7_HETAK1.130e-35100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C7Q7_9STRA9.770e-645.31Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:439494..440021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size210
Hectar predicted targeting categorysignal peptide
Exons3
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.6451075-CDS-H-akashiwo_Contig117:439493..4395321681387104.6451075-CDS-H-akashiwo_Contig117:439493..439532Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 439494..439532 -
1681387104.6552-CDS-H-akashiwo_Contig117:439729..4397831681387104.6552-CDS-H-akashiwo_Contig117:439729..439783Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 439730..439783 -
1681387104.6657271-CDS-H-akashiwo_Contig117:439906..4400111681387104.6657271-CDS-H-akashiwo_Contig117:439906..440011Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 439907..440011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.6808178-UTR-H-akashiwo_Contig117:440011..4400211681387104.6808178-UTR-H-akashiwo_Contig117:440011..440021Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 440012..440021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.6.1prot_H-akashiwo_Contig117.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 439494..440011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.6.1

>prot_H-akashiwo_Contig117.6.1 ID=prot_H-akashiwo_Contig117.6.1|Name=mRNA_H-akashiwo_Contig117.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=66bp
MYGLPVIILGLALFSVLMSLSHLQDCSPGEESAKEKTLRMAQMEKRLMTL
EQEMLENSLLLEQFLQ
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mRNA from alignment at H-akashiwo_Contig117:439494..440021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.6.1 ID=mRNA_H-akashiwo_Contig117.6.1|Name=mRNA_H-akashiwo_Contig117.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=528bp|location=Sequence derived from alignment at H-akashiwo_Contig117:439494..440021- (Heterosigma akashiwo CCMP452)
AAAATGGGTCATGTACGGCCTCCCAGTTATCATTCTGGGGCTAGCCTTAT
TCTCTGTATTGATGAGCTTATCGCATCTTCAGGACTGTAGCCCTGGGGAG
GAAAGCGCAAAAGAGGTATTTTTGCTATCTTAATGATTCATCGAATGAAG
TATAGTGATGACAATTTTGAAATCCAAAACATCCCCCTTTCTTGGAGCAC
TGATTGTAAATATAAATATATAACCATGTATATCTCAGAAAACCCTAAGG
ATGGCACAGATGGAAAAGAGGCTTATGACCTTGGAACAAGAGGTTCAGTT
TTGACTTGTATCATAAAAACCACGTCGCCAAATTCCATCATTCATTACTA
TGATCTAGGACAAGTAATCTCCAGTATGTATCATCATCTTGTTTTTTAAG
AATATCTAGGAACGCTATTGTTTGTTTTGCCATTCATCCCTGCTCTCACA
TGTCCCTGTCATTTGGCCTTATACATATCAATCATTTAGATGCTGGAAAA
TAGTTTATTGCTGGAGCAATTCCTTCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig117:439494..440021-

>mRNA_H-akashiwo_Contig117.6.1 ID=mRNA_H-akashiwo_Contig117.6.1|Name=mRNA_H-akashiwo_Contig117.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=198bp|location=Sequence derived from alignment at H-akashiwo_Contig117:439494..440021- (Heterosigma akashiwo CCMP452)
ATGTACGGCCTCCCAGTTATCATTCTGGGGCTAGCCTTATTCTCTGTATT
GATGAGCTTATCGCATCTTCAGGACTGTAGCCCTGGGGAGGAAAGCGCAA
AAGAGAAAACCCTAAGGATGGCACAGATGGAAAAGAGGCTTATGACCTTG
GAACAAGAGATGCTGGAAAATAGTTTATTGCTGGAGCAATTCCTTCAG
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