mRNA_H-akashiwo_Contig117.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.5.1
Unique NamemRNA_H-akashiwo_Contig117.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A6T5QIA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QIA2_HETAK)

HSP 1 Score: 361 bits (926), Expect = 8.650e-123
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1
Query:   40 MLSKLFLIAFLAVWSVALSFTVRSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAATXXXXXXXXXXXXXXXXXXLAYDVEESA 675
            MLSKLFLIAFLAVWSVALSFTVRSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAATXXXXXXXXXXXXXXXXXXLAYDVEESA
Sbjct:    1 MLSKLFLIAFLAVWSVALSFTVRSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAATXXXXXXXXXXXXXXXXXXLAYDVEESA 212          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: K0STH8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STH8_THAOC)

HSP 1 Score: 129 bits (325), Expect = 4.490e-31
Identity = 75/156 (48.08%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  124 GGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAA 591
            GGA G  +T  GK+  V  +K LLDSS ++F V  +  T  Q+  LRRSLPEGT   V KN+L+ +A EGTE+  +N++    N +FFIE+DI GSVK+W+ FVKD AL E   I  +GG +EG+  D   V+ ++K+PSKIELIT++  A+R+ A
Sbjct:  156 GGAQGGATTLEGKKNTVSAVKELLDSSEMVFTVPASGITVAQVQGLRRSLPEGTTAKVVKNKLMSRAIEGTEYEPVNEMLKGANMWFFIEEDIGGSVKSWKKFVKDEALAESHSI--LGGNIEGTNYDTAGVEQISKLPSKIELITQI--ASRIQA 307          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A6V2PHN8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PHN8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.670e-30
Identity = 69/163 (42.33%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  106 RSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            RS    GGA G  ++ AGK+A V  +K LLD S ++F V     T  Q  LLRR+LPEGT   V KN L+++A EGT++    ++    N +FF+E+DI GS+KA+  F K+N   E     V+GGV+EG + D+  V A++K+PSK+ELI ++  A     T
Sbjct:   28 RSTRLFGGAQGMATSPAGKQAKVAAVKELLDKSEMVFSVPAGSITVAQTQLLRRALPEGTTMSVVKNTLMQRAIEGTDYQVAGELLKGPNMWFFVEEDIGGSIKAFNAFTKENGKTESH--MVLGGVIEGVVYDSAGVTAISKLPSKLELIAQIAGAINAVPT 188          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: B8BYW1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYW1_THAPS)

HSP 1 Score: 122 bits (307), Expect = 1.070e-29
Identity = 72/158 (45.57%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  124 GGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVE-QNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            GGA G  +T  GK+A V  +K LLDSS ++F V  +  T  ++  LRR+LPEGT   V KN+L+ +A EGTE+A I D  +   N +FFIE+DI G+VK W  FVK+  LK+   I  +GG +EG   D   VDA++K+PSK+ELI ++  A +   T
Sbjct:   33 GGARGGATTLDGKKATVTHVKELLDSSEMVFTVPASGITVSKVQGLRRNLPEGTTVKVVKNKLMARAIEGTEYAPIGDQFLTGANMWFFIEEDIGGTVKTWNQFVKEAGLKDTHSI--LGGNIEGVNYDTKGVDAISKLPSKMELIAQIAGAVKAVPT 188          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A7S4J3C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3C3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.760e-29
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  106 RSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            RS +HMGGA+G  +T  GK   V  +K LLD+S +IF V     +      LR+SLPEGT   V KN+L+ +A EGT++ + +++    N +FFIE+DI  ++KA+  F KD   KE   I  +GG +EG   DA  VDA+ K+PSK ELI ++    +   T
Sbjct:   32 RSSLHMGGASGVATTLEGKRVKVERIKGLLDTSEMIFTVPAGSMSVSDTQDLRKSLPEGTVMSVVKNKLMARALEGTDYESASEMLSGPNMWFFIEEDIGATIKAYNKFTKDYDKKESHPI--LGGAMEGVNYDAAGVDAIGKLPSKTELIAKIAGGIKAVPT 192          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A7R9ZA11_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZA11_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.130e-27
Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  106 RSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            RS    GGA+GF +T  GK+  V  +K LLDSS +IF V     T  +   LR+SLPEGT   V KN+L+ +A EGT++   +++    N +FFIE+DI  S+KA+  F KD   KE   I  +GG +EG   D+  VDA+ K+P K ELI ++    +   T
Sbjct:   33 RSTELFGGASGFATTLEGKKEKVERVKELLDSSEMIFTVPAGSMTVSETQDLRKSLPEGTVMSVVKNKLMARALEGTDYECASEMLSGPNMWFFIEEDIGASIKAFNKFTKDYGKKESHPI--LGGSMEGVNYDSKGVDAIGKLPGKKELIAKIAGGIKAVPT 193          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: B7G672_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G672_PHATC)

HSP 1 Score: 113 bits (283), Expect = 1.410e-26
Identity = 60/158 (37.97%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  121 MGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            MGGA G+ ++  GK+  V ++++LLDSS ++F +     T  Q   LRRS+P GT   + KN+L+ +A EGT++A    +    N +FFIE+DI G++KA+  F+K+   +E   I  +GGV+EG+  DA  V+A+ K+PSK +L  ++  + +   T
Sbjct:    1 MGGAQGYATSLEGKKNTVTKVQSLLDSSQMVFTIPAGSITVAQTQALRRSMPSGTTVQIVKNKLMARAVEGTDYAVATSLLQGANAWFFIEEDIGGTLKAYNAFLKNFGKRESHPI--LGGVIEGNTYDAAGVEAIGKLPSKQDLYAKIAGSIKAVPT 156          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A7S4EQC8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQC8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.390e-26
Identity = 66/158 (41.77%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  124 GGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWA-AINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            GG++GF +T  GK+  V  +K LLD+S +IF V     T  +   LRRS+PEGT   V KN L+R+A EGTE+  A   +    N +FFIE+DI  S+KAW  F K+ A  E   I   GG++EG+  DA  ++A+ K+PSK EL  ++        T
Sbjct:   33 GGSSGFATTVEGKKVKVDAVKELLDTSQMIFSVPAGEVTVAESQTLRRSMPEGTTISVVKNTLMRRATEGTEYEEATAPLLKGPNMWFFIEEDIGASIKAWNAFTKEAAKTETHSIN--GGIVEGTNYDAAGIEAIGKLPSKKELYAKIAAGVNAVPT 188          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A7S1E238_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E238_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.170e-26
Identity = 62/157 (39.49%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  124 GGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEWAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAAT 594
            GGA G  ST  GK+  V ++++L+D+S ++F V     T  Q  +LRRSLPEGT   V KN L+ +A  GT++    ++    + +FFIEDDI  S+KA+  F+K+N L E   I  +GGV+E +L DA+ V  +  +PSK+EL  ++  + +   T
Sbjct:   34 GGAGGRASTLEGKKEKVAQIQSLIDTSQMVFTVPAGSITVSQSEILRRSLPEGTTAAVVKNTLMERAVSGTDYETAAELLKGPHMWFFIEDDIGASIKAYNGFIKENDLMESHGI--IGGVIESTLYDADGVKQIGNLPSKLELYAKIAGSIKAVPT 188          
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Match: A0A7S0CCA6_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCA6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.490e-25
Identity = 73/165 (44.24%), Postives = 103/165 (62.42%), Query Frame = 1
Query:  106 RSGIHMGGAAGFKSTKAGKEAVVGELKTLLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTEW-AAINDVCVEQ--NGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVLEGSLLDANAVDALAKMPSKIELITRVGVAARLAA 591
            RS + MGGA G  +T  GK  VV  +KTLL+SS ++F +  +    K++  LR  LPEGT     KN+L++KAA GT++ AA+ D  + +  N +FFI DDI  S+K+ + FVK+   KE   I  +GGV++G  LDA  V A+  +PSK ELIT +  AAR+ A
Sbjct:   31 RSVLKMGGATGRATTLEGKTEVVANVKTLLESSEMVFSMPASGLKVKEMNELRFGLPEGTTAQCVKNKLMQKAAAGTDYEAALTDSSLLKGTNLWFFIRDDIGASIKSHKTFVKEFEKKESHGI--IGGVIDGDTLDALQVVAVGALPSKKELITMI--AARIKA 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6T5QIA2_HETAK8.650e-123100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0STH8_THAOC4.490e-3148.08Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6V2PHN8_9STRA7.670e-3042.33Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8BYW1_THAPS1.070e-2945.57Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4J3C3_9STRA3.760e-2941.72Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7R9ZA11_9STRA5.130e-2741.72Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B7G672_PHATC1.410e-2637.97Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4EQC8_9STRA2.390e-2641.77Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1E238_9STRA3.170e-2639.49Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S0CCA6_9STRA5.490e-2544.24Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:364453..366331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0STH8
PFAMsRibosomal_L10
Model size1063
Max annot lvl2836|Bacillariophyta
KEGG koko:K02864
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorysignal peptide
Exons5
Evalue1.71e-33
EggNOG OGsCOG0244@1|root,2S56U@2759|Eukaryota,2XBWC@2836|Bacillariophyta
DescriptionRibosomal protein L10
Cds size639
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.5.1prot_H-akashiwo_Contig117.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 364492..365946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.0677667-UTR-H-akashiwo_Contig117:364452..3644911681387105.0677667-UTR-H-akashiwo_Contig117:364452..364491Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 364453..364491 +
1681387105.1288698-UTR-H-akashiwo_Contig117:365946..3663311681387105.1288698-UTR-H-akashiwo_Contig117:365946..366331Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 365947..366331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.0801342-CDS-H-akashiwo_Contig117:364491..3645661681387105.0801342-CDS-H-akashiwo_Contig117:364491..364566Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 364492..364566 +
1681387105.0897813-CDS-H-akashiwo_Contig117:364684..3648731681387105.0897813-CDS-H-akashiwo_Contig117:364684..364873Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 364685..364873 +
1681387105.100293-CDS-H-akashiwo_Contig117:365010..3651121681387105.100293-CDS-H-akashiwo_Contig117:365010..365112Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 365011..365112 +
1681387105.1108303-CDS-H-akashiwo_Contig117:365367..3654701681387105.1108303-CDS-H-akashiwo_Contig117:365367..365470Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 365368..365470 +
1681387105.1198149-CDS-H-akashiwo_Contig117:365776..3659461681387105.1198149-CDS-H-akashiwo_Contig117:365776..365946Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 365777..365946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.5.1

>prot_H-akashiwo_Contig117.5.1 ID=prot_H-akashiwo_Contig117.5.1|Name=mRNA_H-akashiwo_Contig117.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=213bp
MLSKLFLIAFLAVWSVALSFTVRSGIHMGGAAGFKSTKAGKEAVVGELKT
LLDSSTVIFGVNTARRTPKQLMLLRRSLPEGTKFMVCKNRLLRKAAEGTE
WAAINDVCVEQNGYFFIEDDIQGSVKAWQNFVKDNALKEDEDIRVVGGVL
EGSLLDANAVDALAKMPSKIELITRVGVAARLAATKIGKGVRLVPTKIGK
GVKLAYDVEESA*
back to top

mRNA from alignment at H-akashiwo_Contig117:364453..366331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.5.1 ID=mRNA_H-akashiwo_Contig117.5.1|Name=mRNA_H-akashiwo_Contig117.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1879bp|location=Sequence derived from alignment at H-akashiwo_Contig117:364453..366331+ (Heterosigma akashiwo CCMP452)
CGCAATTTACTTTTGCACTTGCCACGGCTTGATTATAAGATGCTTTCCAA GCTTTTTCTGATCGCTTTCCTGGCCGTATGGTCAGTTGCTCTTTCCTTCA CCGTAAGGTCTGGGGTGAGTCATTTGAATATCTTTGCTGAGTTCGCTGAA CTTTATATTAAATTTGCGATTGTGGCGAGGAAAAACTTATGAACAAGTTT ACATGGGCTTTTAACGGTTTTTTTTTTCTCAGATCCACATGGGTGGTGCA GCTGGCTTCAAATCCACCAAGGCAGGCAAGGAAGCGGTGGTTGGGGAACT CAAGACGCTTCTGGACTCCAGCACTGTGATTTTCGGTGTGAACACAGCCC GCCGTACTCCTAAGCAGCTTATGCTGCTGCGGAGAAGCCTGCCTGAAGGC ACTAAGTTCATGGTCTGCAAGGTGAGTGTGTTGACCGTTATCTCTTGGAA TATGGTACGTGCTGGGCTACCGATGCCCGTTGCTTGTACCAGTCTTCGGT TTGCATTTTCTAATGTTCACCAGGCGACCTAATATGTTTTTTTTCATCAT GTCTTTAGAACCGCCTCTTGAGAAAAGCTGCAGAGGGAACAGAATGGGCG GCCATCAACGATGTGTGTGTAGAACAGAACGGCTATTTCTTCATCGAAGA TGACATCCAGGTCTTTCAATCCCGATAATTTTCATACTTGTATGTTTTTG TGAATGCCACAAACATTACCATTGCCAATATAATCGTCTCATTCCTTGGT TCGGTGTTTTGAAAAACTATGAAACACACACTGATTGGTTGGGCTGATTC CTCTCATGTATGATCACAATGAGTGGTTTTCACCCTGAATTTTCTGACTT GCTGATTCCTTTTCACCATCAATAATATGTCTTCATTGCAATGTAATGAT AAATTATCTTTCTAGGGGTCTGTCAAGGCTTGGCAGAATTTTGTGAAGGA CAATGCCCTCAAGGAGGATGAAGATATTCGCGTAGTTGGCGGTGTACTGG AGGGCTCTCTGCTTGATGGTAAGGCAGCTGTATGTTTTGTGACGCATCGT AACTTGTTGATGCAGCATCTTACTGTAGACCCCGCTGAACTACACACAAG CACACCATGGAGTTCAATGGTGCAGGGCGAGCGGGGCCTTTTTATTTATT TTGAGGAGGGGTGGGGTGCGGTACGCAGCACAACTAATAGATGCTTGATG TGTATAGTTGTTTGCATTTCATTCATTTCAAGAAGACGGGGGGTGGAAGG GGATGGCTTCAACCGCGCCGGAGTTTCTACAAGCTTCTCTTGCCTTCATC TCTCCTTTCTGCCCCGATGCGCAGCCAACGCTGTGGATGCGCTGGCCAAA ATGCCTTCCAAGATTGAGCTCATCACCCGCGTGGGTGTGGCCGCGCGCCT GGCCGCCACCAAGATCGGCAAGGGCGTGCGCCTGGTGCCCACCAAGATTG GCAAGGGCGTCAAACTGGCTTACGACGTGGAGGAGTCCGCCTAAGCCCGT CCTTCTGCCCCCCTTCCCCCTCGGGACCTGTTCTTGTTCCGGGCCGGCTG CCCAGGAAAGCCTGGGTAGTGACAGCGCCGTGGGGTGCGCCCGCAGCTTT AAACCCAGCCCACTCAAAATCTCCAGCACCCTGGCTCGAACCTGCAAACA GCTGCGCAGCTCAAGCCAAAAAGTACCTCCGGACATGTTCCTTTGGATCT CCTTCTATACATGTAATTCGATTCTTGGTCGTGTTCTCAAGGACGCAGCA ATGTGAAGCTGCTAGATATGCACATATGCAAATGAGGATGAAAAAGGAAC TCTTACTTATGACTTATCTTTTCTTTATTGCTTGTTGTATTAACTCTTTT AAAACAACAGAGAAAAGAAAATGGCGGCA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig117:364453..366331+

>mRNA_H-akashiwo_Contig117.5.1 ID=mRNA_H-akashiwo_Contig117.5.1|Name=mRNA_H-akashiwo_Contig117.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=639bp|location=Sequence derived from alignment at H-akashiwo_Contig117:364453..366331+ (Heterosigma akashiwo CCMP452)
ATGCTTTCCAAGCTTTTTCTGATCGCTTTCCTGGCCGTATGGTCAGTTGC
TCTTTCCTTCACCGTAAGGTCTGGGATCCACATGGGTGGTGCAGCTGGCT
TCAAATCCACCAAGGCAGGCAAGGAAGCGGTGGTTGGGGAACTCAAGACG
CTTCTGGACTCCAGCACTGTGATTTTCGGTGTGAACACAGCCCGCCGTAC
TCCTAAGCAGCTTATGCTGCTGCGGAGAAGCCTGCCTGAAGGCACTAAGT
TCATGGTCTGCAAGAACCGCCTCTTGAGAAAAGCTGCAGAGGGAACAGAA
TGGGCGGCCATCAACGATGTGTGTGTAGAACAGAACGGCTATTTCTTCAT
CGAAGATGACATCCAGGGGTCTGTCAAGGCTTGGCAGAATTTTGTGAAGG
ACAATGCCCTCAAGGAGGATGAAGATATTCGCGTAGTTGGCGGTGTACTG
GAGGGCTCTCTGCTTGATGCCAACGCTGTGGATGCGCTGGCCAAAATGCC
TTCCAAGATTGAGCTCATCACCCGCGTGGGTGTGGCCGCGCGCCTGGCCG
CCACCAAGATCGGCAAGGGCGTGCGCCTGGTGCCCACCAAGATTGGCAAG
GGCGTCAAACTGGCTTACGACGTGGAGGAGTCCGCCTAA
back to top