mRNA_H-akashiwo_Contig117.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.4.1
Unique NamemRNA_H-akashiwo_Contig117.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: A0A836CM26_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM26_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.100e-63
Identity = 125/248 (50.40%), Postives = 157/248 (63.31%), Query Frame = 3
Query:  249 KVEYFDPSIPLDPIEASKSTVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPELAKL-------EQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRPTDEPSSDQKQEDK-RRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKD 968
            +V YF P    D       T RE+PIFPL++V  P GKCPLHIFEMRYRQ+MN I   D RFGIIM D     +A VGT V+V +RSLL DGRQL+MN G  RFK+L++   +PYMV LV+    D     PE  +L       E +VW  L EVVRL+NK+ DK  VTVS +  R  P         QE++ RRS FSFA+  MLD+PP  KQLM+QTL++ +RL +Q +LL +  K LAAQ++LKD
Sbjct:   54 QVSYFTPLSREDTPSPGAKT-RELPIFPLSLVTCPNGKCPLHIFEMRYRQLMNNIAGQDNRFGIIMFDPNTQQIAGVGTVVEVVERSLLPDGRQLVMNIGRERFKLLRVTQEKPYMVGLVELGLVD---EEPEEGQLLEGVRGSEARVWGLLQEVVRLSNKVYDKTKVTVSEDVARAAPAXXXXXXXXQEERARRSAFSFAVTEMLDIPPRAKQLMLQTLNIGERLDYQAELLDKAQKFLAAQATLKD 297          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: A0A7S2V5P8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P8_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.050e-63
Identity = 130/279 (46.59%), Postives = 184/279 (65.95%), Query Frame = 3
Query:  141 QAFVSLAKMRPAEVSGARRLDRQCFLMMSENSGLPEKVEYFDPSIPLDPIEA-SKSTVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPELAKLEQQVWETLNEVVRLTNKIQDKQ-SVTVSGEATRYRPTDEPSSDQKQEDKRR-SNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKD 968
            ++F++  K+ P   S +R+  R   +M ++     +  EYFDP    D     +K  V ++P+FPL MVA P GKCPL I+EMRYR+MMN IQ+ DE+FG+ MVD+RN  L SVGT ++V QRSLL+DGRQLI+N GV RF+IL++   +PY +A V+   +D+  H   LA +E+QVWE L +VVRL+NK+Q  Q S+ +S   T   P    +    + D+RR ++FS A+ +MLD+PP  KQ+M+QT +   RL+FQ  LL  T K+LAAQS+LKD
Sbjct:   53 ESFLASNKLAPIPSSISRKAARS--VMTAKWWENEQPFEYFDPLSTGDGGSTEAKGKVIDLPLFPLGMVAAPFGKCPLQIYEMRYRRMMNDIQKKDEKFGMAMVDNRNGGLMSVGTIMRVTQRSLLEDGRQLIVNEGVERFRILELKQQKPYTIAAVEIIDDDMDLHGVPLASIEEQVWECLQDVVRLSNKMQKTQKSIQMSKPLTYLAPRYSDTGLTLELDRRRITDFSLAVLDMLDIPPLLKQMMLQTTNTYDRLEFQLSLLDPTRKLLAAQSALKD 329          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: A0A7S1TD37_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD37_9RHOD)

HSP 1 Score: 143 bits (360), Expect = 5.840e-37
Identity = 104/258 (40.31%), Postives = 143/258 (55.43%), Query Frame = 3
Query:  228 ENSGLP-EKVEYFDPSIPLDPIEASK---STVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDT--DYEDIMKHSPELAKLEQQVWETLNEVVRLTNKIQDKQ---SVTVSGEATRYRPTDEPS-SDQKQEDKRR-SNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKD 968
            E+  LP E +EY+ P I  + +           E+P+FPL +V  P G  PLHIFEMRYR M N+I + D RFGI+M D   + +A VG   +V +   L DGR L  + G  RF+IL+    EPY++A V    D ED +    E+ +L  +VWETL +V+RL+NK+ DK      T+S  A     +D  S SD  QE   +  +FSF +A +LDL    +QLM+QT    QRL+ Q   L    + LAAQ  +KD
Sbjct:   15 EDENLPNEALEYYFPGINDETLNEGGLGGGETFELPLFPLGLVLHPRGNLPLHIFEMRYRLMFNRIWDGDSRFGIVMYDRERDCVARVGCVAEVQRFEPLPDGRILTNSNGKERFRILRYEKKEPYIIATVQAIKDEEDPVD---EMVELWHRVWETLKDVLRLSNKLYDKDMSLGETISSVAPPAEDSDVGSLSDSPQETILKVQDFSFCVAQLLDLAIRDQQLMLQTQSTVQRLRKQLKSLNVARQYLAAQVIIKD 269          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: D7FWB4_ECTSI (Putative ATP-dependent proteinase, possible LON protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB4_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.040e-36
Identity = 94/249 (37.75%), Postives = 134/249 (53.82%), Query Frame = 3
Query:  303 STVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIM-----------KHSPELAKLEQQVWETLNEVVRLTNKIQDK----QSVTVSGEATRYRPT--------DEPSSD----QKQEDKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKD 968
            ST  E+P+F L+M A P G  PLHIFEMRYRQM N I  TD RFG+++ D++       G  ++  QR LL DGRQ ++N  V RF++LK++   PY V  V+    D             +    L  LE +V++T+N VV L NK+       ++ T+S    RY P          E + D    Q +ED+RR  FS+A+A M+ +    KQL++Q+     RL    ++L +  K LAA+SSLKD
Sbjct:    4 STKTELPVFMLDMSACPGGVVPLHIFEMRYRQMFNDIGTTDNRFGMLVTDAKTGRPCKYGAVMECAQRKLLPDGRQYVLNQAVERFRVLKVLKTNPYTVMEVEVGIPDNKPLEGEPVKWGAEEGTRLEDLELEVYDTVNSVVDLMNKLAPPATPGENRTLSEWFLRYSPKVKRDEGLDGESAGDDLAKQAKEDERRMKFSYAVAEMIAMESRTKQLLLQSRSTAYRLMAVREILVKAQKELAAKSSLKD 252          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: M1V6S3_CYAM1 (Similar to ATP-dependent proteinase BsgA n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6S3_CYAM1)

HSP 1 Score: 141 bits (355), Expect = 3.590e-35
Identity = 95/267 (35.58%), Postives = 139/267 (52.06%), Query Frame = 3
Query:  252 VEYFDPSIPLDPIEASKSTVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPE-------------------------LAKLEQQVWETLNEVVRLTNKIQDK----QSVTVSGEATRYRPTDEPSSDQKQEDKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLK 965
            +EYF PS   D        + E+P+FPL +V  P    PLHIFEMRYRQM  +I+E D RFGI+M D   NA A+VGT  ++     L DGR +  + G  RF++LK   + PY+VALV+   +++   S E                         L  LE++VW  L +V+RL+NK+ ++      + V           E   D +Q   R+  FSFA++++LD+P  Q+QL++QT    +RL  Q  LL    + LAAQ ++K
Sbjct:  109 IEYFSPSEKRDTEVPVSGKLAELPLFPLPLVLSPGQPIPLHIFEMRYRQMFQRIREGDGRFGIVMYDKDRNAHAAVGTMAEINVYEPLADGRIMTSSIGRERFRVLKYTKDSPYLVALVEYFDDEVCIESVEQILAALKEPLPQSGDQETSRISKQSLTLLERRVWSALGDVLRLSNKLYNRVVSLSKLVVDNSPETVLSIPEGHLDPEQNFHRQKLFSFAVSSILDMPVRQQQLLLQTRSTAKRLLKQAQLLEGARQYLAAQVTIK 375          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: A0A7J7ID69_9RHOD (LON peptidase N-terminal domain and RING finger protein 3 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ID69_9RHOD)

HSP 1 Score: 140 bits (354), Expect = 5.010e-35
Identity = 94/269 (34.94%), Postives = 141/269 (52.42%), Query Frame = 3
Query:  252 VEYFDPSIPLDPIEASKSTVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPE-------------------------LAKLEQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRPTDEPSS-----DQKQEDKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKD 968
            +EYF P    +P  A    + E+P+FPL +V  P    PLHIFEMRYRQM  +I++ D RFGI+M D   NA A++GT  ++     L DGR +  + G  RF++LK     PY+V LV+   ++    S E                         L  LE++VW  L +V+RL+NK+ ++  V +S +     P           D +Q   R+  FSFA++++LD+P  Q+QL++QT D  +RL  Q  LL    + LAAQ ++K+
Sbjct:  109 IEYFTPIESAEPTLAGPENLAELPLFPLPLVLSPGQPIPLHIFEMRYRQMFQRIRDGDGRFGIVMFDKDRNAHATIGTMAEITVYEPLPDGRIMTSSTGRQRFRVLKYTKESPYLVGLVEYFDDESRVESAEQIAAALKEPLTQSGTSGDNGDAEQSLTTLERRVWTALGDVLRLSNKLYNR-VVVLSKQVVENSPETXXXXXXXLIDPEQNFHRQKMFSFAVSSILDMPVRQQQLLLQTRDTAKRLLKQAQLLEGARQYLAAQVTIKN 376          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: R7QBJ2_CHOCR (Lon N-terminal domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBJ2_CHOCR)

HSP 1 Score: 138 bits (347), Expect = 2.450e-34
Identity = 84/222 (37.84%), Postives = 137/222 (61.71%), Query Frame = 3
Query:  312 REMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPELAKLEQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRP---TDEPSSDQKQED-----KRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQ 953
            RE+P+FPL MV  P    PLH+FE+RYR + N+I++TD RFGI+M +  +++LAS+G   ++ +   L DGR +  N G  RF+IL+II  +PY  A+V+  Y++      +L+ L + VW  L +V+RL+NK+ DK  + +S E  R  P    D   ++ + +D     +R  +FSFA+  +LD+P E++Q+++Q  +  +RL+ Q  +L    + LAAQ
Sbjct:   38 RELPLFPLRMVLNPGTPVPLHVFELRYRLLFNRIRDTDSRFGIVMYNPDSSSLASIGCAAELTRFEPLPDGRIMTNNIGRERFRILRIIEEKPYTRAVVEHVYDETPDE--DLSALMEDVWVVLQDVLRLSNKLYDK-VLDLSPEIRRLAPGGDADFEGAETRTKDGWPSPRRLEDFSFAVCQVLDMPLEEQQILLQIRNTGKRLRRQNKMLQTARQYLAAQ 256          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: A0A2V3IHX0_9FLOR (LON peptidase N-terminal domain and RING finger protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHX0_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 2.500e-34
Identity = 92/255 (36.08%), Postives = 151/255 (59.22%), Query Frame = 3
Query:  243 PEKVEYFDPSIPLDPIEASKSTVREMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPELAKLEQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRP------TDE---PSSDQKQEDKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKDLNLG 980
            P+ V++F+ S   D ++  +S + E+P+FPL +V +P    PLHIFE+RYR + N++++ D RFGI++ D+  ++LA VG + ++ +   L DGR +  N G  RF+I+KII  +PY  ALV   + D      +L+ L ++V   L +V+RL+NK+ DK  + +S +  R  P      TD+   PS    QE      FSF++  +LD+P +++Q+++Q  D   RL+ Q  +L    K LAAQ ++K+  LG
Sbjct:   69 PQAVQFFNASKQPDSVD--ESALVELPLFPLQLVLMPAMNLPLHIFELRYRLLFNRLRDGDARFGIVLYDANTSSLAQVGCSAELTRFEPLPDGRIMTDNVGRRRFEIVKIIDEKPYTRALVR--FFDDKAPGGDLSSLVKEVSLALQDVLRLSNKLYDK-VLDLSPDIKRLAPNGQIPQTDDSGWPSPSMVQE------FSFSVCQVLDMPLKEQQILLQIDDTAARLRRQEKMLDTARKYLAAQVTIKEAGLG 312          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: M2VXC5_GALSU (ATP-dependent Lon protease n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXC5_GALSU)

HSP 1 Score: 134 bits (337), Expect = 2.590e-33
Identity = 93/264 (35.23%), Postives = 148/264 (56.06%), Query Frame = 3
Query:  195 RLDRQCFLMMSENSGLPEKVEYFDPSIPLDPIEASKSTV------REMPIFPLNMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPELAKLEQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRPTDEPSSDQKQEDKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKD 968
            R  R  F++    S + + VEY    IPL P  ++ +        R +P+FPL++V  P    PLHIFEMRYR + N+I+E D+ FGI++ +  N+++A  G  +++ +   L DGR L +N G  RF++  II ++P++ A V T  EDI      +  L + VW  LN+V+ L+NK+  K +V +S E  R  P  E      ++  R   FS+ ++ +LD+P + +QL++QT   + R Q Q +LL    K LAAQ ++ D
Sbjct:   42 RKSRSFFIVKLACSSIGD-VEY----IPLTPAPSNVTEQEPALGNRVLPLFPLSLVVQPDATIPLHIFEMRYRLLFNRIKEGDKLFGIVLYNKNNDSVARYGCLMELIRFEPLPDGRMLTVNVGKERFRVNHIIKDKPFITASVVT-VEDI-DCDDTIFSLGEAVWTDLNQVLSLSNKLYGK-NVCLSEELRRLAPNPE-----SRDRHRLIMFSYRVSQVLDIPVQDQQLLLQTQSTKDRFQHQLELLEHARKFLAAQLAIND 292          
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Match: A0A1Z9LQX7_9CYAN (ATP-dependent protease n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1Z9LQX7_9CYAN)

HSP 1 Score: 125 bits (313), Expect = 9.390e-31
Identity = 80/227 (35.24%), Postives = 125/227 (55.07%), Query Frame = 3
Query:  297 SKSTVREMPIFPL-NMVAVPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQVYQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPELAKLEQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRPTDEPSSDQKQEDKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLAAQSSLKDLN 974
            S  +VRE+P+FPL ++V  P    PLHIFE RYR ++  + ETD+RFGI+ ++     +A +G   +V Q    DDGR  I+  G  RF++L I    PY  A+V    ++ ++ +P+L  L  QV   L +VV LT K+Q+++            P D P  D  +E       SF +   LD    ++Q +++  D ++RL+ Q++LL  T + LAA++ L DLN
Sbjct:    2 SDFSVRELPLFPLPDVVLFPQQLLPLHIFESRYRMLLQTVLETDKRFGIVRINPETGEMAEIGCCAEVLQHQTADDGRSYIVTLGQXRFRLLNITRETPYRTAMVSWLEDEPVEDAPQLNXLRDQVDAALKDVVSLTAKLQNREVEL---------PDDLP--DLPRE------LSFWIGAHLDQAAAEQQSLLELTDTQERLERQFELLDHTRRQLAARTVLMDLN 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM26_9STRA1.100e-6350.40PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2V5P8_9STRA3.050e-6346.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TD37_9RHOD5.840e-3740.31Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
D7FWB4_ECTSI1.040e-3637.75Putative ATP-dependent proteinase, possible LON pr... [more]
M1V6S3_CYAM13.590e-3535.58Similar to ATP-dependent proteinase BsgA n=1 Tax=C... [more]
A0A7J7ID69_9RHOD5.010e-3534.94LON peptidase N-terminal domain and RING finger pr... [more]
R7QBJ2_CHOCR2.450e-3437.84Lon N-terminal domain-containing protein n=1 Tax=C... [more]
A0A2V3IHX0_9FLOR2.500e-3436.08LON peptidase N-terminal domain and RING finger pr... [more]
M2VXC5_GALSU2.590e-3335.23ATP-dependent Lon protease n=1 Tax=Galdieria sulph... [more]
A0A1Z9LQX7_9CYAN9.390e-3135.24ATP-dependent protease n=2 Tax=Cyanobacteria TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:178264..179280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWB4
PFAMsLON_substr_bdg
Model size1017
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1e-37
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota
Ec32 ortholog descriptionputative ATP-dependent proteinase, possible LON protease
Ec32 orthologEc-25_003740.1
Descriptionhistone H2A-K13 ubiquitination
Cds size951
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.014076-UTR-H-akashiwo_Contig117:178263..1783101681387105.014076-UTR-H-akashiwo_Contig117:178263..178310Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 178264..178310 +
1681387105.0352714-UTR-H-akashiwo_Contig117:179261..1792801681387105.0352714-UTR-H-akashiwo_Contig117:179261..179280Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 179262..179280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.0252185-CDS-H-akashiwo_Contig117:178310..1792611681387105.0252185-CDS-H-akashiwo_Contig117:178310..179261Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 178311..179261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.4.1prot_H-akashiwo_Contig117.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 178311..179261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.4.1

>prot_H-akashiwo_Contig117.4.1 ID=prot_H-akashiwo_Contig117.4.1|Name=mRNA_H-akashiwo_Contig117.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=317bp
MKMKRCVVLLCLCLQIFTADGFSRGAVARGRQAFVSLAKMRPAEVSGARR
LDRQCFLMMSENSGLPEKVEYFDPSIPLDPIEASKSTVREMPIFPLNMVA
VPTGKCPLHIFEMRYRQMMNKIQETDERFGIIMVDSRNNALASVGTTVQV
YQRSLLDDGRQLIMNYGVGRFKILKIISNEPYMVALVDTDYEDIMKHSPE
LAKLEQQVWETLNEVVRLTNKIQDKQSVTVSGEATRYRPTDEPSSDQKQE
DKRRSNFSFALANMLDLPPEQKQLMVQTLDVRQRLQFQYDLLYETLKMLA
AQSSLKDLNLGGEGGL*
back to top

mRNA from alignment at H-akashiwo_Contig117:178264..179280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.4.1 ID=mRNA_H-akashiwo_Contig117.4.1|Name=mRNA_H-akashiwo_Contig117.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1017bp|location=Sequence derived from alignment at H-akashiwo_Contig117:178264..179280+ (Heterosigma akashiwo CCMP452)
CCGCTTTTTTGAACAAAGGTCCTTTTTTTTTGTCCAGCCAAACCTGGATG AAAATGAAGCGGTGTGTGGTTCTTCTTTGTTTATGCTTGCAAATTTTCAC AGCAGATGGGTTCTCGAGAGGTGCTGTTGCCAGGGGCCGCCAAGCCTTTG TTTCGCTGGCGAAAATGAGGCCCGCCGAAGTTTCGGGGGCCAGAAGGCTG GACCGTCAGTGTTTTTTGATGATGAGCGAGAACAGCGGCTTGCCCGAAAA GGTCGAATATTTCGATCCATCAATTCCTCTTGATCCTATTGAAGCATCTA AGTCCACTGTCAGAGAAATGCCAATCTTCCCTCTAAACATGGTTGCAGTG CCCACCGGGAAATGCCCGCTGCACATCTTCGAAATGAGATATAGACAAAT GATGAATAAGATTCAGGAGACAGACGAGAGGTTTGGCATTATCATGGTGG ACTCTCGTAACAACGCTCTTGCCTCTGTCGGTACCACAGTTCAAGTGTAC CAGCGTTCTCTCCTTGATGATGGGAGGCAGCTAATTATGAACTATGGGGT GGGTAGGTTCAAAATACTGAAGATCATAAGCAACGAACCCTATATGGTAG CACTTGTCGACACAGACTATGAAGACATCATGAAGCACAGCCCTGAGTTG GCCAAGCTCGAGCAGCAAGTGTGGGAGACGCTGAACGAGGTGGTCCGGCT GACCAACAAGATCCAGGACAAGCAGTCCGTGACGGTCTCCGGCGAGGCCA CCCGGTACCGCCCCACGGACGAGCCCAGCTCGGACCAGAAGCAGGAGGAC AAGCGGCGGTCGAACTTTTCCTTTGCGCTAGCCAACATGCTGGACCTGCC CCCGGAGCAGAAGCAGCTGATGGTGCAGACGCTGGATGTTCGGCAGCGGC TGCAGTTTCAGTATGACCTGCTTTATGAGACGCTGAAGATGCTAGCCGCG CAGAGCTCGCTGAAAGACCTCAACCTGGGCGGTGAGGGGGGCCTATAAGA GAGCGAAGTAAGGGGGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig117:178264..179280+

>mRNA_H-akashiwo_Contig117.4.1 ID=mRNA_H-akashiwo_Contig117.4.1|Name=mRNA_H-akashiwo_Contig117.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=951bp|location=Sequence derived from alignment at H-akashiwo_Contig117:178264..179280+ (Heterosigma akashiwo CCMP452)
ATGAAAATGAAGCGGTGTGTGGTTCTTCTTTGTTTATGCTTGCAAATTTT
CACAGCAGATGGGTTCTCGAGAGGTGCTGTTGCCAGGGGCCGCCAAGCCT
TTGTTTCGCTGGCGAAAATGAGGCCCGCCGAAGTTTCGGGGGCCAGAAGG
CTGGACCGTCAGTGTTTTTTGATGATGAGCGAGAACAGCGGCTTGCCCGA
AAAGGTCGAATATTTCGATCCATCAATTCCTCTTGATCCTATTGAAGCAT
CTAAGTCCACTGTCAGAGAAATGCCAATCTTCCCTCTAAACATGGTTGCA
GTGCCCACCGGGAAATGCCCGCTGCACATCTTCGAAATGAGATATAGACA
AATGATGAATAAGATTCAGGAGACAGACGAGAGGTTTGGCATTATCATGG
TGGACTCTCGTAACAACGCTCTTGCCTCTGTCGGTACCACAGTTCAAGTG
TACCAGCGTTCTCTCCTTGATGATGGGAGGCAGCTAATTATGAACTATGG
GGTGGGTAGGTTCAAAATACTGAAGATCATAAGCAACGAACCCTATATGG
TAGCACTTGTCGACACAGACTATGAAGACATCATGAAGCACAGCCCTGAG
TTGGCCAAGCTCGAGCAGCAAGTGTGGGAGACGCTGAACGAGGTGGTCCG
GCTGACCAACAAGATCCAGGACAAGCAGTCCGTGACGGTCTCCGGCGAGG
CCACCCGGTACCGCCCCACGGACGAGCCCAGCTCGGACCAGAAGCAGGAG
GACAAGCGGCGGTCGAACTTTTCCTTTGCGCTAGCCAACATGCTGGACCT
GCCCCCGGAGCAGAAGCAGCTGATGGTGCAGACGCTGGATGTTCGGCAGC
GGCTGCAGTTTCAGTATGACCTGCTTTATGAGACGCTGAAGATGCTAGCC
GCGCAGAGCTCGCTGAAAGACCTCAACCTGGGCGGTGAGGGGGGCCTATA
A
back to top