mRNA_H-akashiwo_Contig117.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.2.1
Unique NamemRNA_H-akashiwo_Contig117.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig117.2.1 vs. uniprot
Match: A0A7S2XX58_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX58_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.980e-17
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    4 FAHFCVLLAGYVVHGLSHDLTTNNEPVKLSNKTKGMLATASFVGGLITGWIGIGIEKILFVMLT 195
            F  FC++L  YV+HGL H++   +EP++++  +    A ASFVGGLITGWIGIGIEK+LF+MLT
Sbjct:   54 FGIFCLVLVMYVIHGLFHEMVDQDEPIRMTKASVVAYAAASFVGGLITGWIGIGIEKVLFMMLT 117
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BLAST of mRNA_H-akashiwo_Contig117.2.1 vs. uniprot
Match: A0A7S2UZ96_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ96_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.080e-15
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    4 FAHFCVLLAGYVVHGLSHD-LTTNNEPVKLSNKTKGMLATASFVGGLITGWIGIGIEKILFVMLT 195
            FA FCV+L+ YV+HGL HD L   NE  K +  +    A ASFVGGLITGWIGIGIEK+LFVMLT
Sbjct:  252 FAVFCVILSIYVIHGLVHDHLVEQNEEYKYTKNSVVAYAAASFVGGLITGWIGIGIEKVLFVMLT 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2XX58_9STRA9.980e-1756.25Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2UZ96_9STRA1.080e-1564.62Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:50471..53518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size196
Hectar predicted targeting categorysignal peptide
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.6021938-CDS-H-akashiwo_Contig117:50470..506341681387104.6021938-CDS-H-akashiwo_Contig117:50470..50634Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 50471..50634 -
1681387104.61292-CDS-H-akashiwo_Contig117:53487..535181681387104.61292-CDS-H-akashiwo_Contig117:53487..53518Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 53488..53518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.2.1prot_H-akashiwo_Contig117.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 50471..53518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.2.1

>prot_H-akashiwo_Contig117.2.1 ID=prot_H-akashiwo_Contig117.2.1|Name=mRNA_H-akashiwo_Contig117.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=65bp
FFAHFCVLLAGYVVHGLSHDLTTNNEPVKLSNKTKGMLATASFVGGLITG
WIGIGIEKILFVMLT
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mRNA from alignment at H-akashiwo_Contig117:50471..53518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.2.1 ID=mRNA_H-akashiwo_Contig117.2.1|Name=mRNA_H-akashiwo_Contig117.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3048bp|location=Sequence derived from alignment at H-akashiwo_Contig117:50471..53518- (Heterosigma akashiwo CCMP452)
TTCTTCGCCCACTTCTGCGTGCTCCTGGCGGGTGCGTGTGTGTGTGTTTT
CTCCCCCTGCTGGGTTGTGTTGTGTGGGGGCATTGGCGCAGTTTCTCGAG
GAGGAGCGTGATGATGACAATAGTGCTTTGAGTCAAATGAAGCTGCATTA
GGCAGCCCAGCTGGAAGACTAGGGGGCAAGGGCAAATGCCCAGACGCCCA
ATGTAATGTTGTGGGAAAGTTGATCTTTTATGGGTGGATGTATGGTGGTT
GGGAATGAAGGGAAAACATGGTTCATAACACGAGTCCTAATGATCTGTGA
TCAGCAGTCAGCATGGCAACATCCAGGATGGTTGTTGCCAGCACAGCACC
AGAGCAGCTGTCAGGAGGGCAGTTACCAGCATACATAGTTGTTGTACGTC
AGCTTACAAAACATCATCTAGTCATCAGGTTTTGTTCACTTTTGTAAAAT
GCCTGCGGGTTGCTTCTAACAAACCAACTGAGCGAGAATGCACGCCCAAA
GGCCCACCACAGGCGAGCAGAAGTTGTGAGGAGAAGAAAACCCACCAGTT
GTGAGTAGGAGAAAAAAGCCCACCAGTTCAGTTCAGTGTAGGCAACTGAG
CTCAAGTGCTCCAAAGAGCCACCACAGCCGAGTGAGGTTGTCAGAAAAAG
GGTCCACCATTTGCGTGCAGGCACGAGTCCACCATTTCTTTTGCCATTAT
TTATAGGCAGGTATATAGCCACCCCATCTATATCTAAACTGCCCAAGAGG
GTCAGGGTGCCCCAGATGCCAAGTTGAATCAAAGCACAGAGGGAGAGATT
AAACAGCCGGCATCGAAGATTTGGCAGCAGCAAAAACTTGATCGAAAACC
AGTGCGTCAAGAGTCTCCAGTCCCTAGCAGCAGGGGGTAGTAGCTGTTCC
CCCACCGTTGATTCCAGTGCTGAGTGAAAGAACGTGGCAGAGAGAGTCAA
GAGCTCACAGAAAACGCTTCAGAGAATGTGCAAAGTCCAATGTATCCAGA
AGGGAGGAAGTATAGTCTTTCGAGTCGCCAAGTAGAAGTAGGCAAAGAGC
TATGAAGAAGAGGTGCGCCCGTCGTCGCCGTAATCATCATCATGTTGAAG
AACGAGCAGAATCCAGAGGTCATAGTCGTGTGCCGCCTAAGTAAGGAGAA
GCCCACCATACGGCCGTGGCGTAGGAGAGGACACAGTCACTGTCACCTGT
CATTACACTTCACAGGGTCCAGAAGAGTGGGGCGCCGAACGCCGTGGCAG
CAGTAGGAGCAGAAGGGAAACATCAGAAGAAGCCCAAAGCGCTCCTCCTC
CTCCAAAAAGGAAGAAACACAACGTTTTGGGCACAATGAAGGAAGAATGA
CAAAGTCAAAGTCCCCAGAAGAACACGAGCCATCTAGGCGAGCCGATCGT
CTTGGAGACGACGGTGGCTCTAGCCCAGGCCACCCAGTTCAGAACTGACA
CGGAGTCAGATCAGGGCGAGCAGCACCGAATCGGCCTACAAGGGTCTCCA
CAGTCCCAGTTTGACTTAGAGTTGACGGGCAGAGATCCCAATCTTGAAAC
CATCCAGCGGGCAGCGCGAACGCAGAGACTTTCAAGCGTTGGGGCCATGA
CCTTTGAGTCAAATGAAGCTGCATTAGGCAGCACGGCTGGAAGACTAGGG
AGCAAGGGCAAATGTCCAGACCCCCAAAGTAATGTTGTGGGAAAGTTGAT
CTTTTATGGGTGGATTTATGGTAGTTGGGAATGACGAGAAGGCAAAACAT
GGTTTACAACACGAGTCCTAATGATCTGTGACAGAAGTCAGCATGGCAAC
ATTCAGGATGGTTGTTGCCAGCACAGCACCAGAGCAGCTGTCAGCAGGGC
AGCTGCCAGCATATATAGTTGTTGTCGTCAGCTTACAAAACATCATCAAG
TCATCAGGTTTTGTTTACTTTTGTAAAATGCGTGTGGGGTACTTCTAACA
AACCAATGAGCGAGAATGCACGCCCAAAGTAGTGTGGCGTTGTCTTGTTC
TACATGACTGAATTAAGGTCTCAACGGAAGGCGCACACCCAGCCTTAGTT
CAAGTACATCCACCACCATCACTTAAGCAGGAGTTTGGAGATTATTAGGA
AATGCATTAAAAAATAACTATATACTAAGTACAGTGTATACAAGGCCATC
ACTGCAAAAGACTCAAGAGTTTCGGCCAATACCAGGCCACCACCAGCCAA
AGCTGGCGGCTTGATCCTCAGTTTGAGGCAGCAGCAGAGAGGAAATTTTT
GTTGAAGCTCACAAACAGATCTACTATCCAGCAAAACTGAGGATCAAGCC
GCCAGCTTTGGCTGGAGGTGGCCTTGTATTGGCCGAAACTCTTCAGTCTT
TTGTAGTGATGGCCTAGTATACACTGTGGTATCGTTATTTCTTGAAGAAT
TTTTCTAATAATCTCCATCAACCTCCTACTTCAGTGATTGTGGTGGATGT
GCTTGAACTAGGGCTGGATGTGCGCCTTCCGTTGAGACCTTAACTCAGTC
ATGTAGAACAAGACAATACTTGATGATGGTCTCATCAGAGACAACCTCAA
AATCAAATAGTGTGGTGTATTTTTAATTTATATTATTATGAAAGAAAGAC
AGTTTTTCTTCTTCTTCTGTAAGATCTTGTATGTTTTAGATGTTAGATGT
ATGTAGAAAATGAGCTTTTCTAGGAATTTTGCTTTCTAAGCTGCTGCTGC
CACTGGTGGTAGGGCCCTCTCTTGCAGAATACAGTCATGCGTGCTTACTT
GTTTTACTATCTGGAGCCATGTATGGTGCACAAACAGATTGCTTGGGTAT
TGATGAAGTTGTCAATATACATCTTATTTTTATTATTGATTGATTGATTG
GGTTATTTTTTGTCAACACTTCATATGCACACAGGCTATGTTGTTCATGG
TCTTTCTCATGACTTGACAACCAACAATGAACCCGTGAAACTGAGCAATA
AAACCAAAGGCATGCTTGCCACCGCTAGTTTTGTTGGTGGATTGATCACT
GGATGGATAGGCATTGGCATTGAAAAGATTCTTTTTGTCATGCTCACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig117:50471..53518-

>mRNA_H-akashiwo_Contig117.2.1 ID=mRNA_H-akashiwo_Contig117.2.1|Name=mRNA_H-akashiwo_Contig117.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig117:50471..53518- (Heterosigma akashiwo CCMP452)
TTCTTCGCCCACTTCTGCGTGCTCCTGGCGGGCTATGTTGTTCATGGTCT
TTCTCATGACTTGACAACCAACAATGAACCCGTGAAACTGAGCAATAAAA
CCAAAGGCATGCTTGCCACCGCTAGTTTTGTTGGTGGATTGATCACTGGA
TGGATAGGCATTGGCATTGAAAAGATTCTTTTTGTCATGCTCACA
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