mRNA_H-akashiwo_Contig117.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.15.1
Unique NamemRNA_H-akashiwo_Contig117.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig117.15.1 vs. uniprot
Match: A0A7S3XKZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ6_HETAK)

HSP 1 Score: 235 bits (600), Expect = 1.380e-72
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 1 
Query:    1 TIITFDMFIGDYEGKCKGDGMMWGLGDDSNCLLRTQDQDACNGVAIGFNTRNPSKGIHITVDGERKQYIKGKLSRTFWNKWTPVKILIDSNSTNFNLTLHVNDESYFGKLVS 336
            TIITFDMFIGDYEGKCKGDGMMWGLGDDSNCLLRTQDQDACNGVAIGFNTRNPSKGIHITVDGERKQYIKGKLSRTFWNKWTPVKILIDSNSTNFNLTLHVNDESYF + V+
Sbjct:  212 TIITFDMFIGDYEGKCKGDGMMWGLGDDSNCLLRTQDQDACNGVAIGFNTRNPSKGIHITVDGERKQYIKGKLSRTFWNKWTPVKILIDSNSTNFNLTLHVNDESYFDEEVT 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XKZ6_HETAK1.380e-7296.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:1008487..1011714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size668
Hectar predicted targeting categoryother localisation
Exons6
Cds size336
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.15.1prot_H-akashiwo_Contig117.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 1008505..1010575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.8201568-UTR-H-akashiwo_Contig117:1008486..10085041681387104.8201568-UTR-H-akashiwo_Contig117:1008486..1008504Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 1008487..1008504 +
1681387104.8712885-UTR-H-akashiwo_Contig117:1010575..10107241681387104.8712885-UTR-H-akashiwo_Contig117:1010575..1010724Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 1010576..1010724 +
1681387104.8799274-UTR-H-akashiwo_Contig117:1011051..10111731681387104.8799274-UTR-H-akashiwo_Contig117:1011051..1011173Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 1011052..1011173 +
1681387104.888675-UTR-H-akashiwo_Contig117:1011671..10117141681387104.888675-UTR-H-akashiwo_Contig117:1011671..1011714Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig117 1011672..1011714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.8299785-CDS-H-akashiwo_Contig117:1008504..10085151681387104.8299785-CDS-H-akashiwo_Contig117:1008504..1008515Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1008505..1008515 +
1681387104.839697-CDS-H-akashiwo_Contig117:1009637..10097901681387104.839697-CDS-H-akashiwo_Contig117:1009637..1009790Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1009638..1009790 +
1681387104.8491125-CDS-H-akashiwo_Contig117:1010201..10103711681387104.8491125-CDS-H-akashiwo_Contig117:1010201..1010371Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1010202..1010371 +
1681387104.8590128-CDS-H-akashiwo_Contig117:1010573..10105751681387104.8590128-CDS-H-akashiwo_Contig117:1010573..1010575Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1010574..1010575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.15.1

>prot_H-akashiwo_Contig117.15.1 ID=prot_H-akashiwo_Contig117.15.1|Name=mRNA_H-akashiwo_Contig117.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MFIGDYEGKCKGDGMMWGLGDDSNCLLRTQDQDACNGVAIGFNTRNPSKG
IHITVDGERKQYIKGKLSRTFWNKWTPVKILIDSNSTNFNLTLHVNDESY
FGKLVSRKVLV*
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mRNA from alignment at H-akashiwo_Contig117:1008487..1011714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.15.1 ID=mRNA_H-akashiwo_Contig117.15.1|Name=mRNA_H-akashiwo_Contig117.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3228bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1008487..1011714+ (Heterosigma akashiwo CCMP452)
ACTATCATCACCTTTGACATGTTCATCGGGTGAGTTTTGGTAGTAGTAAA
GGTTAAACCCGAATTGAACAAGAACTGATGTGGCATTTTTTAAATCGATC
AAGAAATGGTGGAGATGGCAGATGTTTGATGACTCCTTGATCGAGATACC
ATCAGCTTGCTTAGTCATTATATAAATACTACACAGGTCCACTTCACATC
TAGTTTCGACCAGGTGGATGCAAGAAAGAAAAAATACTCATCAACTATTT
CACTTGTAACCTTTAAGTTGATGAAGTTGATGATGGCTTCCAGCAACTAT
TGCATTATTAGGAGGACAGGATAGTCCTCACTCGGCAACAAACACCAACA
GCTGTTGGCAACAGAGGCCCCATCATCAGGCCACCTCTGTCACAACCATC
TGCAAACTACTGTAGTGGGAGAAATTGAACATGTAGCCGTCAGCTAGTGC
GTGCGGTTATTGTCAGCTGATGTGCTCCAATAAGAGCGAAAGTCAGGCTG
TTCGCATACCATGTTGTGTAACTGATTAAAACATTCTTCATCCATCTACT
GTTTCAAAAACCCGTCAAAAATATCAATGATGGATTGAAAGTGTCATTAT
CAATATGACATCATTAACAGTGTTAATCATATATGCTATACTCCTAAGCG
GTTTGAAAAGCTACTAGACTTGAAATTAAAACTAACATCATCATGCTATA
ACTCCTCTTAAACTAAATTGGGGTGCTTTTTGGAAGCGCAGAAATCCTTT
GTTTACATGTAGGTAGTAGCTCAAAGCATAATGCTGTTGTCAAACCGTGT
GTAAAATATGATATAATTGATGAAATATGAAAAGAACTATCAATTATGAC
ATAATAATGATAATGACACTTTCAATCAATCTGCCATTGGTTGTTCTAAT
GAATCCAATTCTGGCAATACATGAAAATGGATTTTGTTAAATGTCTGCTG
TGATATAATGGAAGATAATACATGGTCAAGTCTAGCCACCAGTACACCTC
TGGATCCAACCCTGGATGCGGAACGCAGCATAATGTCGCTTCTCTGCCAA
CATCATAATATAAACAACTTTTTAAAAAATGCTGTGCAATAAGCTATCAC
GCTATATAATCCGTTTTGTGTACACTGCTTTTTTATTCTAACATATGGCA
GTGATTATGAGGGCAAATGCAAGGGTGACGGCATGATGTGGGGACTTGGT
GATGACTCGAACTGCTTGCTGAGGACACAAGACCAGGATGCTTGCAATGG
TGTTGCCATTGGCTTCAACACCCGCAACCCTTCCAAGGGTATCCACATCA
CTGTGTAAGTTATTATATGGTTTGTTCTTCTGGAAGCATGTGGCAGGAGC
TTTTCATCATTCTAAATGAAGTCCTAGTATAGCTAAGAACAACACAGATG
AAAGCATTGACTATAGTTCAAGTTTTTCCCCAGATCTTTTTTGTTCAATT
GGGAGGATTTTTTTTTCAATTGTTCAACTACTGGACCAGTAGTGCATATC
AAAAAATGTTGTATGTCATCATCTAGAAATGTAAATCTACACTGAATCAA
AACATGATTACAGATGAAACCAGCAGCAGTATGGTTCAGTGTAAACCAGT
AGTTATAGATGATAAAAGTTATTTAGATGATGAAGTTTCAATCATGGCGA
TCTTTTCTTAGTACTTGTATTAGTACATTTTTTCCTCCCATCCTCCCTGG
TGATGAATTTTTCAGGGATGGCGAAAGGAAGCAGTACATCAAAGGAAAGT
TATCAAGGACATTCTGGAACAAGTGGACTCCTGTCAAAATTTTAATTGAT
AGCAACTCAACCAATTTTAATCTCACTCTTCATGTCAATGATGAGTCCTA
CTTTGGTAAGTTAGTTTCTAGAAAAGTATTGGTTTATTATACTAGCTGGA
CATGCTGTTGTGGGCACACACTCTACATATAGCTGATGTGTAGTGGTAAC
TGTGCAACGATTAGCGCTGCTGCGGAGGTGTCAAAGGGGGGCGCCGCGGC
TCAGACCGCAGCATCCCCTGCGCGACGCCACGCTCATCCCCGCGCGCACC
CCTCCCCCCCGCTCCCCGTGGGCCGCCGCCGCCGCCAGACGAGGAGGTGA
CGTTCACCCAGGCGGCGTTcCGCGACGGGGCCTGGCCGCCGAAGATGACC
TTCtACGGACTCACGGACACCAAGCGGGAGTGCCTGGAGGACCACGCAGT
CCGGAACGTGGTGGTCAAGGTGCTTCGGGAGGAGTACGGTAAGCCGAACA
CACACACCCACCCCCGAACCTGCTGTAGCGGTCAATATTTTCGGCGAGGA
GGATTTCCATTCATACGCACCCCCCTACACACGTGCCCTTGATTGCCCCG
AGCTGTCCCCCTTCCTTTGTGCTACTGGTCTCATAATGCCCCTGCGGGGG
TCCAGTTGGTGTGGTCGCCAGCCCCTCCCCCCCACAGCCTCTCCGGGCAT
GTACCTGCTGCTGCGGGGGGCTGGGCTGTGTGCGGGGTGGGACCTTACCT
GTATATGATGGTGTCAGCAATACCCCACACACACCCCTTTTCCTTTCCAA
CCTGCTTCCCTGCAGTCACCGCTGAGAGGGAACCCGCTGAGAGGGAACCC
AGCACCAAGAAAGAAGAGCAGAAAGAGTCTGAAGCCAGTGAGAACTCCGA
GTTCAACTACCCACGGTTGTCATCCTTCTTTGCCCAGGTATGATCTCTCT
GCGCATGATGTGCGTTTGATTTTTCATCTCTTTTGGTTTTTCATCATTCC
TCTACGTACTCTTTTAATTGCAACTCTTTTTTTTTTTTTTGGGGCTGGGG
AAAGAGAAATCGCCTCTCATATTTTTGAAGTTCTCGATTAGCCTTACTGG
TGAAGTGCCTAGCCAACTTGACACCAACGATATGTTGTTCCTTCTCAGCG
AAAAACAACTTCAGCAACAGTAATGAGTAGTACGTAGCAGCTTTAGTACT
TACTTGTTCAGATTTTTAGTCATTTTTTGATGAATGGACGAACGCATGTG
TGTGTATATGTATATGTTTATTTATTTATACATGATGGTTGATGATGCAT
GTATAAAAATAAAAGCCTATCTACCGCTCCTTTTTGCCGCACCTGCCTCC
CTCGTTGCACTCACGACCACCCCCGAGTTCTTCACACACGCACACCCCTT
GCCCGCTTGCCTCGCCCCCTTCCCCCCCACATCAGGTGAAAGAGAGCGTC
CAGACCAACCTGGCCGGGTGGACGGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig117:1008487..1011714+

>mRNA_H-akashiwo_Contig117.15.1 ID=mRNA_H-akashiwo_Contig117.15.1|Name=mRNA_H-akashiwo_Contig117.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1008487..1011714+ (Heterosigma akashiwo CCMP452)
ATGTTCATCGGTGATTATGAGGGCAAATGCAAGGGTGACGGCATGATGTG
GGGACTTGGTGATGACTCGAACTGCTTGCTGAGGACACAAGACCAGGATG
CTTGCAATGGTGTTGCCATTGGCTTCAACACCCGCAACCCTTCCAAGGGT
ATCCACATCACTGTGGATGGCGAAAGGAAGCAGTACATCAAAGGAAAGTT
ATCAAGGACATTCTGGAACAAGTGGACTCCTGTCAAAATTTTAATTGATA
GCAACTCAACCAATTTTAATCTCACTCTTCATGTCAATGATGAGTCCTAC
TTTGGTAAGTTAGTTTCTAGAAAAGTATTGGTTTGA
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