mRNA_H-akashiwo_Contig117.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.13.1
Unique NamemRNA_H-akashiwo_Contig117.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig117.13.1 vs. uniprot
Match: A0A7S3UUB9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB9_HETAK)

HSP 1 Score: 277 bits (708), Expect = 3.350e-92
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 2 
Query:    2 GKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDRTSDEYLFSNALGVQGFAVTCTSTNQWSFVLGDGSSMVAATGGTCATDSVSFVAVTYNDASDQANLYVDGQLVANLTSPGYSAAVTDITIGAGYNDVTLEY 421
            GKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDRTSDEYLFSNALGVQGFAVTCTST+QWSFVLGDGSSMVAATGGTCATDSVSFVAVTYNDASDQANLYVDGQLVANLTSPGYSAAVTDITIGAGYNDVTLEY
Sbjct:   90 GKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDRTSDEYLFSNALGVQGFAVTCTSTDQWSFVLGDGSSMVAATGGTCATDSVSFVAVTYNDASDQANLYVDGQLVANLTSPGYSAAVTDITIGAGYNDVTLEY 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UUB9_HETAK3.350e-9299.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:1002263..1004428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size424
Hectar predicted targeting categoryother localisation
Exons5
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.7554264-CDS-H-akashiwo_Contig117:1002263..10022901681387104.7554264-CDS-H-akashiwo_Contig117:1002263..1002290Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1002264..1002290 -
1681387104.7655728-CDS-H-akashiwo_Contig117:1002554..10026701681387104.7655728-CDS-H-akashiwo_Contig117:1002554..1002670Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1002555..1002670 -
1681387104.7743013-CDS-H-akashiwo_Contig117:1003351..10034771681387104.7743013-CDS-H-akashiwo_Contig117:1003351..1003477Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1003352..1003477 -
1681387104.7824483-CDS-H-akashiwo_Contig117:1003746..10038511681387104.7824483-CDS-H-akashiwo_Contig117:1003746..1003851Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1003747..1003851 -
1681387104.792627-CDS-H-akashiwo_Contig117:1004379..10044281681387104.792627-CDS-H-akashiwo_Contig117:1004379..1004428Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1004380..1004428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.13.1prot_H-akashiwo_Contig117.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 1002264..1004428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.13.1

>prot_H-akashiwo_Contig117.13.1 ID=prot_H-akashiwo_Contig117.13.1|Name=mRNA_H-akashiwo_Contig117.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=141bp
WEVYPIRWIWSFDHHSHHQVQLFPHPHIYCCILGQTNSRQNLGRISVLQR
LGRARLRCDLHLDKPVVVRPGGRLEHGRSHGRHLRDRLRLFRCGDLQRRL
GPGQPLRGRAAGGEPHLPRLQRRRHRHHHRRRVQRRDPGVL
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mRNA from alignment at H-akashiwo_Contig117:1002263..1004428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.13.1 ID=mRNA_H-akashiwo_Contig117.13.1|Name=mRNA_H-akashiwo_Contig117.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2166bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1002263..1004428- (Heterosigma akashiwo CCMP452)
TGGGAAGTCTATCCAATACGATGGATCTGGTCTTTTGACCATCACTCCCG
TGCGTAAATACTATGCCCAGTCTAATTTTTGATTATTGTAACAGTGCACA
TGCTGTACCACTGTTTCGGACAACAGCAGTGTTCATCAACAACACCATTA
TACATGTTTAATTTGGGATTTCGCACTGTACGTATGCATGACTGATTCAA
CTGAACCCTATTAGTAACTACCATCATCCATATTACATACATATGGAACC
AAGCATCCAAAAACATTCTCCAACAATTATATTATGACATCAGTATCGAC
TTCAGTATTAAGGTGATGTGTACATCATGATGGTAATGTGATTATCTTCT
AAAGAGTACTGCACTTTCAGTCACCAACCAGTACAGTGCAATTATGGTTA
TTGTGACGATGACCATCATATAATAAATACTGTAGTGATGATAACATTTA
TATTGGAAGAATGAAAGTGATTACTGATGTTAGTATTCATCGAACAATGA
ATTGATCTCTAGCAAATGAAGAAAGACAAGAACGTTTTGCCACCCACCCT
CTTCCTAACTCCTCCCTCCCCGGCCAGACCACCAAGTTCAACTTTTTCCA
CATCCGCACATTTACTGTTGCATTTTGGGCCAAACCAACTCAAGACAGAA
CCTCGGACGAATATCTGTTCTCCAACGCCTTGGTGAGCAGAGTGCCCGTT
GCTCCGCTTGGAATCCTGCTCCATGGATACCATGCACTCCCTCCCCACCC
CCTCCCACTTCACTACACCGGCGCGCGCCCCGGCACTAGCGCCGCCCCCG
CCGTCCCCGCCCAGCCCCCTCCTCCTTCCCCTCTCTGCCCAACCTGACAC
CACCCGCCCAACCCACCGCTCACAAGCCTCTGAAACCAGGGAAGGGACGG
TCTCGGGTGCGGTCAGTGCCACGCTTTGTCGCCCCCCCCCCCCCCTTTCA
GGGCGTGCAAGGCTTCGCTGTGACCTGCACCTCGACAAACCAGTGGTCGT
TCGTCCTGGGGGACGGCTCGAGCATGGTCGCAGCCACGGGCGGCACCTGC
GCGACCGACTCCGTCTCTTTCGTTGCGGTGCGCAGCTGAAAGCATGATTG
TTTGTCTGCACCATCATGCTCCGGCGTGGAACACGTGGGGGGGGGGGCAT
GGTTCCAGCCTTTTCGAGTGTGCGCGGCCGTCCTCCGCGCTTGGCCCTTC
ATCTTGCCCGCACTGCCTCCTTTTTGGAAAATATTCAATCCTTCGTACAT
GTGCAGCTGGAGGGTTATGCGCGCACTTGATGCTTGATCATGTGCCCTTC
ATATGAAGATCTCCGGAACTGTGCCAGCGGCTCACCAGATGCAACGATCG
GCTGGATGATGCCAATTTTTTAGAGTGTATGAGAGCAGCCTTGCTGGGAG
CATCACCTTGTAAGTATCTGCTTCACTGCAAAAGCTTTCCAGGGGGGGGA
GTAGGAGGCACGTACATGTGCTACTCATGGGTGGAGAACACCTGTCTGGG
CAAGGCCAGCAAGAAGCAACAATACAGTCCCTCCCGGTGGCACTGCTGCT
GTTGCGCTGTTATTATCCCACAACGACCTTAGCTGATTTATCATTACATA
TTTTTAATTACATACATGAAGTATGTACGTACGCACAACAAGGCCTACCC
CATCTTACCATCCCCACACCCTTTCTACCGATTGGCCACCCAAGGCCGCC
CAGGAGGGGATGGCGCACACTGAGTTTTTTTCTGTTCCGAAACAACAAAT
CCACACAGGTGACCTACAACGACGCCTCGGACCAGGCCAACCTCTACGTG
GACGGGCAGCTGGTGGCGAACCTCACCTCCCCCGGCTACAGCGCCGCCGT
CACCGACATCACCATCGGCGCCGGGTATGACGACGATGACGGCGGTCGCT
TTGTACACATATATTATATATATATAAATAAATATAATATATATTTACTG
AGGTCCAGCCTAATTATTAAAAAGGATCTGTTTCATCCCCTGTTGATCCA
GTCCTACTTCTTTGGAGGGCACACACCACTGGCCCATATATAGACGTGCA
AATCAAACCATTCACGATGGGGAAAAAAGGAGCGACGACGAGAACAACTG
AGCCCCCCTCCGCCCCAAAAAAAACACTGCCCAACAAGGTACAACGACGT
GACCCTGGAGTACTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig117:1002263..1004428-

>mRNA_H-akashiwo_Contig117.13.1 ID=mRNA_H-akashiwo_Contig117.13.1|Name=mRNA_H-akashiwo_Contig117.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1002263..1004428- (Heterosigma akashiwo CCMP452)
TGGGAAGTCTATCCAATACGATGGATCTGGTCTTTTGACCATCACTCCCA
CCACCAAGTTCAACTTTTTCCACATCCGCACATTTACTGTTGCATTTTGG
GCCAAACCAACTCAAGACAGAACCTCGGACGAATATCTGTTCTCCAACGC
CTTGGGCGTGCAAGGCTTCGCTGTGACCTGCACCTCGACAAACCAGTGGT
CGTTCGTCCTGGGGGACGGCTCGAGCATGGTCGCAGCCACGGGCGGCACC
TGCGCGACCGACTCCGTCTCTTTCGTTGCGGTGACCTACAACGACGCCTC
GGACCAGGCCAACCTCTACGTGGACGGGCAGCTGGTGGCGAACCTCACCT
CCCCCGGCTACAGCGCCGCCGTCACCGACATCACCATCGGCGCCGGGTAC
AACGACGTGACCCTGGAGTACTT
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