mRNA_H-akashiwo_Contig117.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.12.1
Unique NamemRNA_H-akashiwo_Contig117.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:1000227..1001326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size452
Hectar predicted targeting categoryother localisation
Exons3
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.7081842-CDS-H-akashiwo_Contig117:1000226..10002851681387104.7081842-CDS-H-akashiwo_Contig117:1000226..1000285Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1000227..1000285 -
1681387104.7167587-CDS-H-akashiwo_Contig117:1000603..10006861681387104.7167587-CDS-H-akashiwo_Contig117:1000603..1000686Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1000604..1000686 -
1681387104.725688-CDS-H-akashiwo_Contig117:1001018..10013261681387104.725688-CDS-H-akashiwo_Contig117:1001018..1001326Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1001019..1001326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.12.1prot_H-akashiwo_Contig117.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 1000227..1001326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.12.1

>prot_H-akashiwo_Contig117.12.1 ID=prot_H-akashiwo_Contig117.12.1|Name=mRNA_H-akashiwo_Contig117.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
GTSTECVTSNSGDMSKCHGIGVEFKTGGADRGINLWLDGETVDSLNGAAN
VDLFYGHWSNVTVRFIAHTSYSGEVVVSLADHGQLLSTDYNVTDMLSNTF
DNKINFYAINPNASCIDTHRFTNIAFNTTKNICAFITPAPTASRAPPPPP
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mRNA from alignment at H-akashiwo_Contig117:1000227..1001326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.12.1 ID=mRNA_H-akashiwo_Contig117.12.1|Name=mRNA_H-akashiwo_Contig117.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1000227..1001326- (Heterosigma akashiwo CCMP452)
GGAACTTCCACCGAGTGTGTGACCTCAAACTCTGGCGACATGAGCAAGTG
CCATGGTATCGGCGTGGAATTCAAGACTGGCGGTGCTGACCGGGGAATCA
ACCTCTGGTTGGATGGGGAGACAGTAGATTCACTGAATGGGGCTGCGAAC
GTGGACCTGTTCTATGGCCACTGGAGCAATGTCACTGTGCGATTCATTGC
CCACACCTCGTACTCTGGGGAGGTGGTGGTCAGCCTGGCAGATCACGGCC
AGCTGCTCAGCACTGACTACAACGTCACGGACATGTTGTCCAACACCTTT
GACAACAAGTGAGTCCTCCATGAAAGCTCCTTTCTTTCCCCAGTCACAGT
GCACAAAACGTCTCTCAGCAATCTTTTGCCGGTTATTTACCTTTTCCCTT
TGCATGCCAGTGTAACTGTACATTTGACCAACAACATGTTCTTTCTTCAT
ATTTTTGATAGATACTTATGTATAATCAGGGTATGGTTGATGTGTATGTA
TTCCAAACAAGCTGATGTGGTGGTGCTGTTCATCTGTGGAAAATGGCTTT
CCAACCAATCTCGATAGAACTAATATAGCGTCGATGATGTCACCTCAGCC
CTTCTTTCCCGTTTAACCTTATTTGTTACTTCCCTGCCAGGATCAACTTC
TATGCGATCAATCCCAACGCCTCCTGCATTGACACCCACCGATTCACGAA
CATTGCCTTCAACACCACAAAGAGTGAGTCTTGGCAAAACGAGAGTACAT
ATGTAGAGGAAAGTTCTTACTAATAATAATATACTTGCTGCTGCACTGCC
CCCTTTCTCCAAACATAATTCGATAACATGACAACATGCTGTTTAAATCC
AAACAACAGTTAAAATGAAACTGTGTTCAACTGTACTCAACTCAACGATA
TAGCAAGCGCCCGGCTTACACAAGCCGCTGTGTACACTACCTTCTCGGAG
GACCTTCTTAACTCATGACCCTCCAAGGGCCCTGTGATCCATCGACCCCC
CCCTCTCCCACTCCCACCCCCTCCTCACCCCCCGGGCACAGACATCTGCG
CCTTCATCACGCCGGCGCCCACCGCCTCCCGGGCCCCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig117:1000227..1001326-

>mRNA_H-akashiwo_Contig117.12.1 ID=mRNA_H-akashiwo_Contig117.12.1|Name=mRNA_H-akashiwo_Contig117.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1000227..1001326- (Heterosigma akashiwo CCMP452)
GGAACTTCCACCGAGTGTGTGACCTCAAACTCTGGCGACATGAGCAAGTG
CCATGGTATCGGCGTGGAATTCAAGACTGGCGGTGCTGACCGGGGAATCA
ACCTCTGGTTGGATGGGGAGACAGTAGATTCACTGAATGGGGCTGCGAAC
GTGGACCTGTTCTATGGCCACTGGAGCAATGTCACTGTGCGATTCATTGC
CCACACCTCGTACTCTGGGGAGGTGGTGGTCAGCCTGGCAGATCACGGCC
AGCTGCTCAGCACTGACTACAACGTCACGGACATGTTGTCCAACACCTTT
GACAACAAGATCAACTTCTATGCGATCAATCCCAACGCCTCCTGCATTGA
CACCCACCGATTCACGAACATTGCCTTCAACACCACAAAGAACATCTGCG
CCTTCATCACGCCGGCGCCCACCGCCTCCCGGGCCCCCCCCCCCCCCCCC
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