mRNA_H-akashiwo_Contig1169.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1169.2.1
Unique NamemRNA_H-akashiwo_Contig1169.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 327 bits (839), Expect = 2.060e-108
Identity = 157/291 (53.95%), Postives = 207/291 (71.13%), Query Frame = 1
Query:   13 VAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINRFRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKSF 885
            V+  K +L  KY +TD G+L   LG+K+ R+   K  H+SQ+ FIKDAL KFG D  P  KTP+D T+DL+    +KA   D N +RSMVGTL+W+A W+ PE++F VHKLQR    PE KHF A  R F+YLKG+ ++S++LGG  +LRA+ D+DFC DR+DGKSVTGYI+FLGD+P+VW+S+LQ +VTT T EAEYLAL    KD+MWLR LL E+G  Q +PT V EDN+AC+ WA ++ V ++NRH HV+YH  +E V    I + YI T +QV D+ TKALN  +F
Sbjct:   50 VSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 340          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 252 bits (643), Expect = 3.190e-73
Identity = 121/293 (41.30%), Postives = 195/293 (66.55%), Query Frame = 1
Query:    1 DDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEY--KANEDDINRFRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALN 873
            D   ++ +K  +   Y ++D G++E+ LG+K+ R+ + +TI +SQ  FI++A  KF   +  P   P++  +D+++N +   + +  +  +FRS+VGT++W+A W+ PE+++++H L +    P A   AA+  + +YL  + +K + LGG   L AY DADFC++R  G+S +G+ +FLG SP++W+SR+Q  VT  TTEAEY++L     DVMWL+ LL  LG+KQ     + EDN ACI+WA + TV++  RH+HV+YHY +E+VQ KEIEVKY++T  Q+ D+FTK L+
Sbjct:  691 DKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 205 bits (521), Expect = 7.810e-61
Identity = 106/296 (35.81%), Postives = 180/296 (60.81%), Query Frame = 1
Query:   13 VAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            +A++KA + +K+RI D G+    LG++I+ ++ ++T+ +S   + +  + KFG +N  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   ++ A  +    + +H+ + YH++RE V   E+E++Y++T+ Q+ D  TK L+ K+
Sbjct:   11 IASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSKT 306          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6A3HAR6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HAR6_9STRA)

HSP 1 Score: 206 bits (523), Expect = 7.370e-60
Identity = 106/296 (35.81%), Postives = 181/296 (61.15%), Query Frame = 1
Query:   13 VAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            +A++KA + +K+RI D G+    L ++I+ ++ ++T+ +SQ  + +  + KFG +N  P  TP++P + L+ + E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   ++ A  +    + +H+ + YH++RE V   E+E++Y++T+ Q+ D  TK L+ K+
Sbjct:  122 IASVKAGIAEKFRIKDTGRARFILSIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKSDEPQTEEDKAKMKSRPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWVGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALISTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELEYVDTNNQLADFMTKGLSSKT 417          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6G0MQP7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MQP7_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.460e-59
Identity = 107/298 (35.91%), Postives = 178/298 (59.73%), Query Frame = 1
Query:    7 RTVAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            R  A++KA + +K+RI D G+    LG++I+ ++ ++T+ +SQ  + +  + KFG +N  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL      P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   +S A  +    + +H+ +  H++RE V   E+E++Y++T  Q+ D  TK L+ K+
Sbjct:   15 RAFASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADESQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSCFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTHLEAYSDADWVDNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMSLAKNVGYQARTKHIDIRCHFIREKVVSNEVELEYVDTKNQLADFMTKGLSSKT 312          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.890e-59
Identity = 111/300 (37.00%), Postives = 182/300 (60.67%), Query Frame = 1
Query:    1 DDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANED-DINR---FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            D  T+  +K  ++  +++ D G +   LG++++ ++++KT+ + Q ++I D + +F      P+ TP+D ++ ++   + +  E+  I R   FRS++G+LS++A  + P+I+ AV +L R    P  +H+ AA ++ +YLKG+ N  +  GG     L AY DAD+ +DR D +SV+G ++ L  +PVVW +  QK+V   TTEAEY+AL  C K+ MW R LL  LG KQ   TT++EDN   I+ A       + +H+ + YHY+RE +   +IE+KYINT EQV D  TK L +K+
Sbjct:   80 DMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGLPKKT 379          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.930e-58
Identity = 106/296 (35.81%), Postives = 178/296 (60.14%), Query Frame = 1
Query:   13 VAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            +A++KA + +K+RI D G+    LG++I+ ++ ++T+ +SQ  + +  + KFG +N  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ +  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T   EDN   ++ A  +      +H+ + YH++RE V   E+E++Y++T  Q+ D  TK L+ K+
Sbjct:   91 IASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLNDIGAEQVGATVRYEDNQGAMALAKNVGYQAHTKHIDIRYHFIREKVVINEVELEYVDTKNQLADFMTKGLSSKT 386          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.160e-58
Identity = 105/296 (35.47%), Postives = 179/296 (60.47%), Query Frame = 1
Query:   13 VAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            +A++KA + +K+RI D G+    LG++I+ ++ ++T+ +SQ  + +  + KFG +N  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DA++  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+    + EDN   ++ A  +    + +H+ + YH++RE V   E+E++Y++T  Q+ D  TK L+ K+
Sbjct:  122 IASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGLSSKT 417          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.300e-57
Identity = 112/299 (37.46%), Postives = 177/299 (59.20%), Query Frame = 1
Query:   10 TVAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKAN---EDDINR---FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTI--LRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            T+  +K  ++  +++ D G +   LG++++ +++ KT+ + Q ++I D + +F      P+ TP+D  + L V KE +     E  I R   FRS++G+LS++A  + P+I+ AV +L R    P  +H+ AA ++ +YLKG+ N  +   G     L AY DAD+ +DR D +SV+G ++ L  +PVVW +  QK+V   TTE EY+AL  C K+ MW R LL  LG KQ   TT++EDN   I+ A       + +H+ + YHY+RE +   +IE+KYINT EQV D  TK L +K+
Sbjct:    3 TINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIADKTLMLRQPRYIDDLVQRFNQTEAHPSVTPID--LSLPVTKEDQPETQAEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGLPKKT 299          
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.750e-57
Identity = 105/296 (35.47%), Postives = 177/296 (59.80%), Query Frame = 1
Query:   13 VAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIKDALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKS 882
            +A+ KA + +K+RI D G+    L ++I+ ++ ++T+ +SQ  + +  + KFG +N  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   ++ A  +    + +H+ + YH++RE V   E+E++ ++T  Q+ D  TK L+ K+
Sbjct:   67 IASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVINEVELESVDTKNQLADFMTKGLSSKT 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1169.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK2.060e-10853.95Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK3.190e-7341.30Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6A3GI70_9STRA7.810e-6135.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HAR6_9STRA7.370e-6035.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MQP7_9STRA1.460e-5935.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JMT1_9STRA4.890e-5937.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4F359_9STRA2.930e-5835.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA3.160e-5835.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DK21_9STRA1.300e-5737.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3VCN8_9STRA1.750e-5735.47Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1169contigH-akashiwo_Contig1169:104734..105618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo137439
PFAMsRVT_2,Retrotran_gag_2,rve
Model size885
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-50
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size885
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.2887287-CDS-H-akashiwo_Contig1169:104733..1056181681387104.2887287-CDS-H-akashiwo_Contig1169:104733..105618Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1169 104734..105618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1169.2.1prot_H-akashiwo_Contig1169.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1169 104734..105618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1169.2.1

>prot_H-akashiwo_Contig1169.2.1 ID=prot_H-akashiwo_Contig1169.2.1|Name=mRNA_H-akashiwo_Contig1169.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=295bp
DDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLSKKTIHVSQSQFIK
DALIKFGYDNCPPAKTPMDPTMDLSVNKEYKANEDDINRFRSMVGTLSWI
ATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGG
TILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEA
EYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTR
KNRHLHVNYHYVRELVQQKEIEVKYINTSEQVGDLFTKALNEKSF
back to top

mRNA from alignment at H-akashiwo_Contig1169:104734..105618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1169.2.1 ID=mRNA_H-akashiwo_Contig1169.2.1|Name=mRNA_H-akashiwo_Contig1169.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=885bp|location=Sequence derived from alignment at H-akashiwo_Contig1169:104734..105618+ (Heterosigma akashiwo CCMP452)
GATGACAGAACGGTGGCTGCACTCAAAGCGACGCTTAAAAAGAAGTACAG AATCACTGATGCGGGTAAACTGGAGAACTTTCTAGGCCTAAAAATAAACA GGAACTTGAGCAAAAAGACAATTCACGTGTCTCAGTCACAGTTCATCAAA GATGCGCTGATCAAGTTTGGGTATGATAATTGTCCCCCTGCGAAGACTCC AATGGATCCTACAATGGATCTTAGTGTCAACAAGGAATACAAAGCTAATG AGGATGATATCAACAGGTTTCGTTCCATGGTGGGGACTCTTAGCTGGATC GCAACCTGGTCTATACCTGAGATCTCTTTCGCAGTACACAAGCTACAGCG TGCGACTAACTATCCAGAAGCCAAACACTTTGCTGCTGCAGGCAGGGTCT TCAAATACCTGAAAGGTTCTGGTAATAAGTCCATCAAACTTGGTGGGGGC ACAATTCTTCGCGCTTATTGCGATGCGGACTTCTGCACCGATAGGATTGA TGGAAAATCGGTCACCGGTTATATTGTCTTCCTAGGAGACTCTCCTGTAG TTTGGACATCTAGACTACAGAAATCAGTGACTACGTGTACCACTGAGGCC GAGTATCTAGCTCTTGGAGAATGTGCAAAAGATGTGATGTGGCTGCGATA CTTGTTGGCAGAACTAGGCTTCAAACAAATCAAGCCTACAACAGTGAATG AAGACAACACAGCTTGCATCTCTTGGGCTACTGAAATCACTGTTACTAGG AAGAATCGCCATCTTCATGTGAACTATCACTATGTAAGGGAGCTAGTTCA ACAAAAGGAGATTGAAGTGAAGTACATCAACACTTCAGAGCAAGTTGGAG ATCTGTTCACCAAGGCTCTCAATGAGAAATCATTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1169:104734..105618+

>mRNA_H-akashiwo_Contig1169.2.1 ID=mRNA_H-akashiwo_Contig1169.2.1|Name=mRNA_H-akashiwo_Contig1169.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=885bp|location=Sequence derived from alignment at H-akashiwo_Contig1169:104734..105618+ (Heterosigma akashiwo CCMP452)
GATGACAGAACGGTGGCTGCACTCAAAGCGACGCTTAAAAAGAAGTACAG
AATCACTGATGCGGGTAAACTGGAGAACTTTCTAGGCCTAAAAATAAACA
GGAACTTGAGCAAAAAGACAATTCACGTGTCTCAGTCACAGTTCATCAAA
GATGCGCTGATCAAGTTTGGGTATGATAATTGTCCCCCTGCGAAGACTCC
AATGGATCCTACAATGGATCTTAGTGTCAACAAGGAATACAAAGCTAATG
AGGATGATATCAACAGGTTTCGTTCCATGGTGGGGACTCTTAGCTGGATC
GCAACCTGGTCTATACCTGAGATCTCTTTCGCAGTACACAAGCTACAGCG
TGCGACTAACTATCCAGAAGCCAAACACTTTGCTGCTGCAGGCAGGGTCT
TCAAATACCTGAAAGGTTCTGGTAATAAGTCCATCAAACTTGGTGGGGGC
ACAATTCTTCGCGCTTATTGCGATGCGGACTTCTGCACCGATAGGATTGA
TGGAAAATCGGTCACCGGTTATATTGTCTTCCTAGGAGACTCTCCTGTAG
TTTGGACATCTAGACTACAGAAATCAGTGACTACGTGTACCACTGAGGCC
GAGTATCTAGCTCTTGGAGAATGTGCAAAAGATGTGATGTGGCTGCGATA
CTTGTTGGCAGAACTAGGCTTCAAACAAATCAAGCCTACAACAGTGAATG
AAGACAACACAGCTTGCATCTCTTGGGCTACTGAAATCACTGTTACTAGG
AAGAATCGCCATCTTCATGTGAACTATCACTATGTAAGGGAGCTAGTTCA
ACAAAAGGAGATTGAAGTGAAGTACATCAACACTTCAGAGCAAGTTGGAG
ATCTGTTCACCAAGGCTCTCAATGAGAAATCATTT
back to top