mRNA_H-akashiwo_Contig1168.2.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A6V1TGB8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TGB8_HETAK) HSP 1 Score: 519 bits (1336), Expect = 6.110e-181 Identity = 278/327 (85.02%), Postives = 278/327 (85.02%), Query Frame = 1
Query: 4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC----------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR 864
GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIK TCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRG RRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR
Sbjct: 233 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKVTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFAVGRLSRYLSCPNKDHQEAAEYLAGYLRRTADMGMVFGGRGGNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGMLTALTRRRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR 559
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A6V1VJZ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VJZ2_HETAK) HSP 1 Score: 323 bits (828), Expect = 3.470e-102 Identity = 175/324 (54.01%), Postives = 214/324 (66.05%), Query Frame = 1
Query: 4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF----------CGNP----------------------------YEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGI 861
G+LA G FQMLAIHVDD+Q+ASQS AL++QF+ ++ +F+ K +FVG DL RDR A+TIK T +KIA +L++HGL++ H KFTPCAPGV MS DS+SEKAD+ YQ LVG F++EFR D F C N Y IRI++DSDHG CPD+ RSTSG++V+ G SLIIHKSKLQH+ TL + EAELVAL+L++CEA+WVR R M AYTD MAVV MAN Q+ LQRTRHLNIKRHFL DEV+E RLSV H+ GK N D+FTKP RV FER E L +
Sbjct: 410 GSLAGGDFQMLAIHVDDVQVASQSVALQQQFLDQLGAEFKYKLSPTSRFVGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINFSVGKLSRFLACPNADHMDAALYLAGYLRRTPGKGMVFGGSRDYRIRIISDSDHGNCPDSGRSTSGIAVFAGDSLIIHKSKLQHITTLGAPEAELVALVLSICEARWVRAMLWQLVGARDRMQAYTDCMAVVHMANHQKGLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYNFTDVFTKPQNRVLFERNVEMLNV 733
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S3Y431_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y431_HETAK) HSP 1 Score: 297 bits (761), Expect = 2.420e-96 Identity = 159/299 (53.18%), Postives = 198/299 (66.22%), Query Frame = 1
Query: 4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGK 786
G+L+ G FQMLAI VDDIQ+ASQS AL+++FV ++ + F+ K +FVG D+ RDR A+TIK T +K+AQ+LE HGL H K+TPCAPGV +S DS+ ++ D++ YQ LVG QFIREFR D +F Y +R+V+DSDHG CPDT RSTSG+ V++G SLI+HKSKLQH+ TLS+AEAELVAL+LA+CEAKWV R + AYTD MAVV MAN Q+HLQRTRHLNIKRHFLKDEV+E RLSV H+ GK
Sbjct: 81 GSLSAGDFQMLAIQVDDIQVASQSVALQKKFVNQLGSVFKHKFSPASRFVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGK 379
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S4DC66_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC66_HETAK) HSP 1 Score: 297 bits (761), Expect = 6.980e-94 Identity = 159/299 (53.18%), Postives = 198/299 (66.22%), Query Frame = 1
Query: 4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGK 786
G+L+ G FQMLAI VDDIQ+ASQS AL+++FV ++ + F+ K +FVG D+ RDR A+TIK T +K+AQ+LE HGL H K+TPCAPGV +S DS+ ++ D++ YQ LVG QFIREFR D +F Y +R+V+DSDHG CPDT RSTSG+ V++G SLI+HKSKLQH+ TLS+AEAELVAL+LA+CEAKWV R + AYTD MAVV MAN Q+HLQRTRHLNIKRHFLKDEV+E RLSV H+ GK
Sbjct: 278 GSLSAGDFQMLAIQVDDIQVASQSVALQKKFVNQLGSVFKHKFSPASRFVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGK 576
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S3Y454_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y454_HETAK) HSP 1 Score: 297 bits (761), Expect = 4.500e-92 Identity = 159/299 (53.18%), Postives = 198/299 (66.22%), Query Frame = 1
Query: 4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGK 786
G+L+ G FQMLAI VDDIQ+ASQS AL+++FV ++ + F+ K +FVG D+ RDR A+TIK T +K+AQ+LE HGL H K+TPCAPGV +S DS+ ++ D++ YQ LVG QFIREFR D +F Y +R+V+DSDHG CPDT RSTSG+ V++G SLI+HKSKLQH+ TLS+AEAELVAL+LA+CEAKWV R + AYTD MAVV MAN Q+HLQRTRHLNIKRHFLKDEV+E RLSV H+ GK
Sbjct: 454 GSLSAGDFQMLAIQVDDIQVASQSVALQKKFVNQLGSVFKHKFSPASRFVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGK 752
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S4DE91_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE91_HETAK) HSP 1 Score: 157 bits (398), Expect = 2.460e-40 Identity = 75/129 (58.14%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF 390
G+LA G FQMLAIHVDD+Q+ASQS AL++QF+ ++ +F+ K +FVG DL RDR A+TIK T +KIA +L++HGL++ H KFTPCAPGV MS DS+SEKAD+ YQ LVG F++EFR D F
Sbjct: 410 GSLAGGDFQMLAIHVDDVQVASQSVALQQQFLDQLGAEFKYKLSPTSRFVGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINF 538
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: Q9XII7_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XII7_ARATH) HSP 1 Score: 139 bits (351), Expect = 1.840e-33 Identity = 98/322 (30.43%), Postives = 156/322 (48.45%), Query Frame = 1
Query: 16 EGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGK-FVGLDLSRDREARTIKFTCETKIA-QLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFCGNPY--------------------------------------EIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGI 861
+G F ++ ++VDDI IAS S+A Q +E+ +F+++ D K F+GL+++R +I C+ K A +LL+ G+ P P ++M +D DI++Y+++VG L ++ R D F N ++ DSD C D+ RST+ ++++G SLI +SK QH V+ SSAEAE AL LA CE W+ A P Y+DS A + +A +RT+H+ + H +++ + G L + HVR ++ ADI TKPL FE L+ + I
Sbjct: 1128 DGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISI---CQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: Q9XIL8_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XIL8_ARATH) HSP 1 Score: 132 bits (332), Expect = 5.950e-31 Identity = 93/321 (28.97%), Postives = 156/321 (48.60%), Query Frame = 1
Query: 19 GTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGK-FVGLDLSRDREARTIKFTCETKIA-QLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFCGNPY--------------------------------------EIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGI 861
G + ++ ++VDDI IAS ++A Q +++Q F+++ D K F+GL+++R ++ C+ K A +LL G+ N P P +++ + D ++Y+++VG L ++ R D F N ++ DSD CPD+ ST+G ++++G SLI +SK QH+V+ SSAEAE AL LA CE W+ A ++DS A + +A +RT+H+ I H +++++ +G L + HVR ++ ADI TKPL FE L+ + I
Sbjct: 939 GEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEITRTEAGISL---CQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLASLTAATTIPILFSDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTEDQVADIMTKPLFPNQFEHLKSKMSI 1256
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: UPI0008FD027A (uncharacterized protein LOC109116512 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD027A) HSP 1 Score: 127 bits (320), Expect = 1.350e-30 Identity = 94/321 (29.28%), Postives = 153/321 (47.66%), Query Frame = 1
Query: 31 MLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGK-FVGLDLSRDREARTIKFTCETKIA-QLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF--------------------------------------CGNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHM---TAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR 864
++ I+VDDI + L + + +Q +FQIK + K F+G++++R + I C+ K ++LE GL +P +++S+D+ AD Y+KL+G L ++ R D +F N + +D+D G CPD+ +S +G V++G+SL+ KSK Q V+ SSAE+E AL CE W+ D + P + T + DS + + +A + +RT+H+ + HF++D+V G L + HV E AD+ TKPL HF RL +GIR
Sbjct: 70 VILIYVDDILVTGNDVTLFSELKEVLQAEFQIKDLGEMKYFLGIEVARSQMGIQI---CQRKYTLEMLEEFGLLGCKPAASPMEAKLKLSQDAGELLADPTSYRKLIGKLIYLSVTRPDISFPVTKLSQYMAQPRDTHFQAALRVLKYLKNAPGQGLYYSSQNDLSLTAYSDADWGACPDSRKSVTGFCVFLGNSLVSWKSKKQSTVSRSSAESEYRALAQTTCELLWISSLLS--DIQVPLLNPITLFCDSKSAIHIATNPVYHERTKHIEMDCHFVRDKVKSGFLQLSHVSSSEQIADLLTKPLYIDHFHRLLIKMGIR 385
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A5C529_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C529_VITVI) HSP 1 Score: 124 bits (311), Expect = 2.840e-29 Identity = 85/299 (28.43%), Postives = 149/299 (49.83%), Query Frame = 1
Query: 10 LAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKR-GSDGKFVGLDLSRDREARTIKFTCETK-IAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALG 858
L +G ++ I+VDDI + + +L E+F K + ++F++ G F+GL + + E I + K I LL+R +E A TP + +++ +D + D Y+ ++G L ++ R D + G+ +E+ +D+D C +STS ++GHSL+ SK Q+LV LS+AEAE +A L + W++ + H+ D+ +V+ ++ RT+H+ I+ HFL+D +G +++ V + ADIFTKPL+ F +R LG
Sbjct: 59 LEKGDMLLVQIYVDDIIFGATNVSLHEEFSKCMHSEFEMSMMGELNFFLGLQIKQLNEGTFIN---QAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEKGKSIDSTMYRGMIGSLLYLTASRPDIMYNILKRDNGHRLWYPKGDNFELIAYSDADFVGCKVERKSTSDTCHFLGHSLVSWHSKKQNLVALSTAEAEYIAAGLCCAQIIWMKQTLIDFNLSFEHVPIKCDNTSVINISKNPVQHSRTKHIEIRHHFLRDHAQKGDITLEFVSTNDQLADIFTKPLSEEQFVDIRRQLG 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1168.2.1 >prot_H-akashiwo_Contig1168.2.1 ID=prot_H-akashiwo_Contig1168.2.1|Name=mRNA_H-akashiwo_Contig1168.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=289bp MGNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFback to top mRNA from alignment at H-akashiwo_Contig1168:170494..171480+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1168.2.1 ID=mRNA_H-akashiwo_Contig1168.2.1|Name=mRNA_H-akashiwo_Contig1168.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=987bp|location=Sequence derived from alignment at H-akashiwo_Contig1168:170494..171480+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1168:170494..171480+ >mRNA_H-akashiwo_Contig1168.2.1 ID=mRNA_H-akashiwo_Contig1168.2.1|Name=mRNA_H-akashiwo_Contig1168.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=867bp|location=Sequence derived from alignment at H-akashiwo_Contig1168:170494..171480+ (Heterosigma akashiwo CCMP452)back to top |