mRNA_H-akashiwo_Contig1168.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1168.2.1
Unique NamemRNA_H-akashiwo_Contig1168.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A6V1TGB8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TGB8_HETAK)

HSP 1 Score: 519 bits (1336), Expect = 6.110e-181
Identity = 278/327 (85.02%), Postives = 278/327 (85.02%), Query Frame = 1
Query:    4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC----------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR 864
            GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIK TCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF                                         GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRG       RRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR
Sbjct:  233 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKVTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFAVGRLSRYLSCPNKDHQEAAEYLAGYLRRTADMGMVFGGRGGNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGMLTALTRRRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR 559          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A6V1VJZ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VJZ2_HETAK)

HSP 1 Score: 323 bits (828), Expect = 3.470e-102
Identity = 175/324 (54.01%), Postives = 214/324 (66.05%), Query Frame = 1
Query:    4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF----------CGNP----------------------------YEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGI 861
            G+LA G FQMLAIHVDD+Q+ASQS AL++QF+ ++  +F+ K     +FVG DL RDR A+TIK T  +KIA +L++HGL++ H KFTPCAPGV MS DS+SEKAD+  YQ LVG   F++EFR D  F          C N                             Y IRI++DSDHG CPD+ RSTSG++V+ G SLIIHKSKLQH+ TL + EAELVAL+L++CEA+WVR         R  M AYTD MAVV MAN Q+ LQRTRHLNIKRHFL DEV+E RLSV H+ GK N  D+FTKP  RV FER  E L +
Sbjct:  410 GSLAGGDFQMLAIHVDDVQVASQSVALQQQFLDQLGAEFKYKLSPTSRFVGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINFSVGKLSRFLACPNADHMDAALYLAGYLRRTPGKGMVFGGSRDYRIRIISDSDHGNCPDSGRSTSGIAVFAGDSLIIHKSKLQHITTLGAPEAELVALVLSICEARWVRAMLWQLVGARDRMQAYTDCMAVVHMANHQKGLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYNFTDVFTKPQNRVLFERNVEMLNV 733          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S3Y431_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y431_HETAK)

HSP 1 Score: 297 bits (761), Expect = 2.420e-96
Identity = 159/299 (53.18%), Postives = 198/299 (66.22%), Query Frame = 1
Query:    4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGK 786
            G+L+ G FQMLAI VDDIQ+ASQS AL+++FV ++ + F+ K     +FVG D+ RDR A+TIK T  +K+AQ+LE HGL   H K+TPCAPGV +S DS+ ++ D++ YQ LVG  QFIREFR D +F                                          Y +R+V+DSDHG CPDT RSTSG+ V++G SLI+HKSKLQH+ TLS+AEAELVAL+LA+CEAKWV          R  + AYTD MAVV MAN Q+HLQRTRHLNIKRHFLKDEV+E RLSV H+ GK
Sbjct:   81 GSLSAGDFQMLAIQVDDIQVASQSVALQKKFVNQLGSVFKHKFSPASRFVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGK 379          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S4DC66_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC66_HETAK)

HSP 1 Score: 297 bits (761), Expect = 6.980e-94
Identity = 159/299 (53.18%), Postives = 198/299 (66.22%), Query Frame = 1
Query:    4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGK 786
            G+L+ G FQMLAI VDDIQ+ASQS AL+++FV ++ + F+ K     +FVG D+ RDR A+TIK T  +K+AQ+LE HGL   H K+TPCAPGV +S DS+ ++ D++ YQ LVG  QFIREFR D +F                                          Y +R+V+DSDHG CPDT RSTSG+ V++G SLI+HKSKLQH+ TLS+AEAELVAL+LA+CEAKWV          R  + AYTD MAVV MAN Q+HLQRTRHLNIKRHFLKDEV+E RLSV H+ GK
Sbjct:  278 GSLSAGDFQMLAIQVDDIQVASQSVALQKKFVNQLGSVFKHKFSPASRFVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGK 576          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S3Y454_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y454_HETAK)

HSP 1 Score: 297 bits (761), Expect = 4.500e-92
Identity = 159/299 (53.18%), Postives = 198/299 (66.22%), Query Frame = 1
Query:    4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------------------------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGK 786
            G+L+ G FQMLAI VDDIQ+ASQS AL+++FV ++ + F+ K     +FVG D+ RDR A+TIK T  +K+AQ+LE HGL   H K+TPCAPGV +S DS+ ++ D++ YQ LVG  QFIREFR D +F                                          Y +R+V+DSDHG CPDT RSTSG+ V++G SLI+HKSKLQH+ TLS+AEAELVAL+LA+CEAKWV          R  + AYTD MAVV MAN Q+HLQRTRHLNIKRHFLKDEV+E RLSV H+ GK
Sbjct:  454 GSLSAGDFQMLAIQVDDIQVASQSVALQKKFVNQLGSVFKHKFSPASRFVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGK 752          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A0A7S4DE91_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE91_HETAK)

HSP 1 Score: 157 bits (398), Expect = 2.460e-40
Identity = 75/129 (58.14%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    4 GNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKFVGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF 390
            G+LA G FQMLAIHVDD+Q+ASQS AL++QF+ ++  +F+ K     +FVG DL RDR A+TIK T  +KIA +L++HGL++ H KFTPCAPGV MS DS+SEKAD+  YQ LVG   F++EFR D  F
Sbjct:  410 GSLAGGDFQMLAIHVDDVQVASQSVALQQQFLDQLGAEFKYKLSPTSRFVGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINF 538          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: Q9XII7_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XII7_ARATH)

HSP 1 Score: 139 bits (351), Expect = 1.840e-33
Identity = 98/322 (30.43%), Postives = 156/322 (48.45%), Query Frame = 1
Query:   16 EGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGK-FVGLDLSRDREARTIKFTCETKIA-QLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFCGNPY--------------------------------------EIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGI 861
            +G F ++ ++VDDI IAS S+A   Q  +E+  +F+++   D K F+GL+++R     +I   C+ K A +LL+  G+        P  P ++M +D      DI++Y+++VG L ++   R D  F  N                                         ++   DSD   C D+ RST+  ++++G SLI  +SK QH V+ SSAEAE  AL LA CE  W+        A  P    Y+DS A + +A      +RT+H+ +  H +++ +  G L + HVR ++  ADI TKPL    FE L+  + I
Sbjct: 1128 DGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISI---CQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: Q9XIL8_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XIL8_ARATH)

HSP 1 Score: 132 bits (332), Expect = 5.950e-31
Identity = 93/321 (28.97%), Postives = 156/321 (48.60%), Query Frame = 1
Query:   19 GTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGK-FVGLDLSRDREARTIKFTCETKIA-QLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFCGNPY--------------------------------------EIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGI 861
            G + ++ ++VDDI IAS ++A   Q  +++Q  F+++   D K F+GL+++R     ++   C+ K A +LL   G+ N      P  P +++ +       D ++Y+++VG L ++   R D  F  N                                         ++   DSD   CPD+  ST+G ++++G SLI  +SK QH+V+ SSAEAE  AL LA CE  W+        A       ++DS A + +A      +RT+H+ I  H +++++ +G L + HVR ++  ADI TKPL    FE L+  + I
Sbjct:  939 GEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEITRTEAGISL---CQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLASLTAATTIPILFSDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTEDQVADIMTKPLFPNQFEHLKSKMSI 1256          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: UPI0008FD027A (uncharacterized protein LOC109116512 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD027A)

HSP 1 Score: 127 bits (320), Expect = 1.350e-30
Identity = 94/321 (29.28%), Postives = 153/321 (47.66%), Query Frame = 1
Query:   31 MLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGK-FVGLDLSRDREARTIKFTCETKIA-QLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAF--------------------------------------CGNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHM---TAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR 864
            ++ I+VDDI +      L  +  + +Q +FQIK   + K F+G++++R +    I   C+ K   ++LE  GL       +P    +++S+D+    AD   Y+KL+G L ++   R D +F                                        N   +   +D+D G CPD+ +S +G  V++G+SL+  KSK Q  V+ SSAE+E  AL    CE  W+       D + P +   T + DS + + +A    + +RT+H+ +  HF++D+V  G L + HV   E  AD+ TKPL   HF RL   +GIR
Sbjct:   70 VILIYVDDILVTGNDVTLFSELKEVLQAEFQIKDLGEMKYFLGIEVARSQMGIQI---CQRKYTLEMLEEFGLLGCKPAASPMEAKLKLSQDAGELLADPTSYRKLIGKLIYLSVTRPDISFPVTKLSQYMAQPRDTHFQAALRVLKYLKNAPGQGLYYSSQNDLSLTAYSDADWGACPDSRKSVTGFCVFLGNSLVSWKSKKQSTVSRSSAESEYRALAQTTCELLWISSLLS--DIQVPLLNPITLFCDSKSAIHIATNPVYHERTKHIEMDCHFVRDKVKSGFLQLSHVSSSEQIADLLTKPLYIDHFHRLLIKMGIR 385          
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Match: A5C529_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C529_VITVI)

HSP 1 Score: 124 bits (311), Expect = 2.840e-29
Identity = 85/299 (28.43%), Postives = 149/299 (49.83%), Query Frame = 1
Query:   10 LAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKR-GSDGKFVGLDLSRDREARTIKFTCETK-IAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFC--------------GNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKPLARVHFERLREALG 858
            L +G   ++ I+VDDI   + + +L E+F K + ++F++   G    F+GL + +  E   I    + K I  LL+R  +E A    TP +  +++ +D   +  D   Y+ ++G L ++   R D  +               G+ +E+   +D+D   C    +STS    ++GHSL+   SK Q+LV LS+AEAE +A  L   +  W++      +    H+    D+ +V+ ++       RT+H+ I+ HFL+D   +G +++  V   +  ADIFTKPL+   F  +R  LG
Sbjct:   59 LEKGDMLLVQIYVDDIIFGATNVSLHEEFSKCMHSEFEMSMMGELNFFLGLQIKQLNEGTFIN---QAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEKGKSIDSTMYRGMIGSLLYLTASRPDIMYNILKRDNGHRLWYPKGDNFELIAYSDADFVGCKVERKSTSDTCHFLGHSLVSWHSKKQNLVALSTAEAEYIAAGLCCAQIIWMKQTLIDFNLSFEHVPIKCDNTSVINISKNPVQHSRTKHIEIRHHFLRDHAQKGDITLEFVSTNDQLADIFTKPLSEEQFVDIRRQLG 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1168.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1TGB8_HETAK6.110e-18185.02Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V1VJZ2_HETAK3.470e-10254.01Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y431_HETAK2.420e-9653.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DC66_HETAK6.980e-9453.18Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y454_HETAK4.500e-9253.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DE91_HETAK2.460e-4058.14Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
Q9XII7_ARATH1.840e-3330.43Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
Q9XIL8_ARATH5.950e-3128.97Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
UPI0008FD027A1.350e-3029.28uncharacterized protein LOC109116512 n=1 Tax=Taren... [more]
A5C529_VITVI2.840e-2928.43Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1168contigH-akashiwo_Contig1168:170494..171480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4558.Sb0010s008890.1
PFAMsRVT_2,Retrotran_gag_2,rve
Model size867
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.63e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3G9AM@35493|Streptophyta,3M33Z@4447|Liliopsida
Descriptionsource UniProtKB
Cds size867
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.116033-CDS-H-akashiwo_Contig1168:170493..1708871681387104.116033-CDS-H-akashiwo_Contig1168:170493..170887Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1168 170494..170887 +
1681387104.1279206-CDS-H-akashiwo_Contig1168:171007..1714801681387104.1279206-CDS-H-akashiwo_Contig1168:171007..171480Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1168 171008..171480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1168.2.1prot_H-akashiwo_Contig1168.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1168 170494..171480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1168.2.1

>prot_H-akashiwo_Contig1168.2.1 ID=prot_H-akashiwo_Contig1168.2.1|Name=mRNA_H-akashiwo_Contig1168.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=289bp
MGNLAEGTFQMLAIHVDDIQIASQSKALEEQFVKEIQTKFQIKRGSDGKF
VGLDLSRDREARTIKFTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRD
STSEKADIDEYQKLVGGLQFIREFRADTAFCGNPYEIRIVTDSDHGMCPD
TARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVR
GHAGGADARRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVA
EGRLSVRHVRGKENTADIFTKPLARVHFERLREALGIR*
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mRNA from alignment at H-akashiwo_Contig1168:170494..171480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1168.2.1 ID=mRNA_H-akashiwo_Contig1168.2.1|Name=mRNA_H-akashiwo_Contig1168.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=987bp|location=Sequence derived from alignment at H-akashiwo_Contig1168:170494..171480+ (Heterosigma akashiwo CCMP452)
ATGGGAAATCTGGCTGAGGGCACTTTCCAAATGCTAGCAATTCATGTGGA TGACATCCAGATTGCCTCCCAGTCCAAGGCCCTCGAGGAGCAGTTTGTGA AGGAGATACAGACCAAGTTCCAGATTAAGCGCGGGTCTGATGGCAAGTTT GTCGGGCTAGATCTCTCCAGGGATAGGGAGGCCAGGACCATCAAGTTCAC ATGCGAGACCAAGATTGCCCAGCTTCTGGAGAGGCATGGCCTTGAGAACG CGCACAAGAAGTTCACTCCTTGTGCGCCTGGTGTCCAGATGTCCCGCGAC TCCACGTCAGAGAAGGCGGACATAGATGAGTACCAGAAGCTGGTGGGGGG GCTGCAGTTCATCAGGGAGTTTCGTGCAGACACTGCTTTTTGCGGTTGGG CGGCTCTCTAGGTACCTAAGCTGCCCCAACAAGGACCACCAGGAGGCGGC TGAGTACCTGGCGGGCTACCTCCGGCGGACGGCTGACATGGGGATGGTTT TGGCGGCCGTGGAGGCAATCCTTATGAAATACGAATAGTCACGGACAGCG ATCATGGGATGTGTCCTGACACTGCGAGGTCGACCTCTGGTGTGTCTGTG TATATTGGCCACTCGCTTATTATTCACAAATCTAAGCTGCAGCATCTGGT GACTCTGAGTAGTGCGGAAGCTGAGCTGGTGGCGCTCATTCTCGCGGTGT GTGAGGCAAAGTGGGTGCGGGGGCATGCTGGCGGCGCTGACGCGCGAAGG CCTCATATGACTGCTTATACTGACAGCATGGCGGTGGTGCAAATGGCGAA CCAGCAGCAGCACCTCCAGAGGACTCGCCATCTGAACATCAAGCGTCATT TTCTGAAGGATGAAGTGGCTGAGGGCAGGCTGTCTGTGCGCCATGTCAGG GGGAAGGAGAATACTGCTGATATTTTCACCAAGCCCCTTGCCAGGGTGCA TTTTGAAAGGCTCAGGGAGGCTCTTGGGATTCGTTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1168:170494..171480+

>mRNA_H-akashiwo_Contig1168.2.1 ID=mRNA_H-akashiwo_Contig1168.2.1|Name=mRNA_H-akashiwo_Contig1168.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=867bp|location=Sequence derived from alignment at H-akashiwo_Contig1168:170494..171480+ (Heterosigma akashiwo CCMP452)
ATGGGAAATCTGGCTGAGGGCACTTTCCAAATGCTAGCAATTCATGTGGA
TGACATCCAGATTGCCTCCCAGTCCAAGGCCCTCGAGGAGCAGTTTGTGA
AGGAGATACAGACCAAGTTCCAGATTAAGCGCGGGTCTGATGGCAAGTTT
GTCGGGCTAGATCTCTCCAGGGATAGGGAGGCCAGGACCATCAAGTTCAC
ATGCGAGACCAAGATTGCCCAGCTTCTGGAGAGGCATGGCCTTGAGAACG
CGCACAAGAAGTTCACTCCTTGTGCGCCTGGTGTCCAGATGTCCCGCGAC
TCCACGTCAGAGAAGGCGGACATAGATGAGTACCAGAAGCTGGTGGGGGG
GCTGCAGTTCATCAGGGAGTTTCGTGCAGACACTGCTTTTTGCGGCAATC
CTTATGAAATACGAATAGTCACGGACAGCGATCATGGGATGTGTCCTGAC
ACTGCGAGGTCGACCTCTGGTGTGTCTGTGTATATTGGCCACTCGCTTAT
TATTCACAAATCTAAGCTGCAGCATCTGGTGACTCTGAGTAGTGCGGAAG
CTGAGCTGGTGGCGCTCATTCTCGCGGTGTGTGAGGCAAAGTGGGTGCGG
GGGCATGCTGGCGGCGCTGACGCGCGAAGGCCTCATATGACTGCTTATAC
TGACAGCATGGCGGTGGTGCAAATGGCGAACCAGCAGCAGCACCTCCAGA
GGACTCGCCATCTGAACATCAAGCGTCATTTTCTGAAGGATGAAGTGGCT
GAGGGCAGGCTGTCTGTGCGCCATGTCAGGGGGAAGGAGAATACTGCTGA
TATTTTCACCAAGCCCCTTGCCAGGGTGCATTTTGAAAGGCTCAGGGAGG
CTCTTGGGATTCGTTGA
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