mRNA_H-akashiwo_Contig1168.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1168.1.1
Unique NamemRNA_H-akashiwo_Contig1168.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 184 bits (467), Expect = 1.780e-54
Identity = 89/157 (56.69%), Postives = 116/157 (73.89%), Query Frame = 1
Query:    4 FIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGTILRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEYL 474
            FIKDAL KFG ++     TP+D+TVDL  T  +KA   D   ++SMVGTLAWV+ +W+ PE+ F VHKLQR    P P+HF A  R F+YLKG   ++LR+GG  +LRA+ D+DF ND++DGKSVTGYI+FLGD+PI W+S+LQ +V+ ST EAEYL
Sbjct:   93 FIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVA-NWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYL 248          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A507DKM5_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DKM5_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 4.510e-26
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    4 FIKDALVKFGFEHCLPASTPMDNTVDLPVTKEY-KAHPD-DVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGTI-LRAYCDADFINDQLDGKSVTGYIIFLGDS-PISWTSQLQKSVSNSTTEAEYL 474
            ++ D L +FG + C P +TPMD T   P   E  K  P+     ++ +VG+L ++    + P+I  AV  L R  + P P+H  AA RV +YL+G    +L IGG  + L  Y DAD+ N+ +D +S+TGY+ ++G++ P++W S+ Q +V+ S+TEAEY+
Sbjct:  108 YVNDILERFGMQDCKPVNTPMDRTKLEPYEVENTKTSPNPQEGEYRKIVGSLVYLMIC-TRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSDYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFYIGNAGPVTWASKRQPTVALSSTEAEYM 267          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A1S3Z698_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Z698_TOBAC)

HSP 1 Score: 105 bits (262), Expect = 1.630e-25
Identity = 58/158 (36.71%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIG--GGTILRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAE 468
            +++KD L       C  A TPM +T     ++E      D   ++ ++G L ++S  ++ P+I FAV KL +  + PG  H+    R+ +YL    H  +++     T L AY D+D+  D  D  S+TGY+++LGDSPISW+S+ Q+SVS S+TEAE
Sbjct:   41 KYVKDLLQDVNMAECKGAPTPMTSTCTFETSREDSKV--DGTLYRRVIGKLHYLS--FTRPDIAFAVSKLSQFMHQPGVSHWKTVKRLLRYLCHTAHLGIKLAKKSATQLVAYSDSDWAGDPFDRTSITGYVVYLGDSPISWSSKKQRSVSRSSTEAE 194          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A6P5RM83_PRUAV (uncharacterized protein LOC110747981 n=2 Tax=Prunus TaxID=3754 RepID=A0A6P5RM83_PRUAV)

HSP 1 Score: 109 bits (272), Expect = 1.920e-25
Identity = 67/161 (41.61%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYK--AHP-DDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGA-GHKALRIGGGTILRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEY 471
            ++  D L+K G   C P STP      LP TK +K    P  D   ++S+VG L +++  +S P+I FAV+ L +  + P   HFAA  RV +YL G   H      G   L+AY DAD+  D  D +S TGY++FLG++PISW ++ Q +VS S+TEAEY
Sbjct:  103 KYATDLLIKAGMTQCKPCSTPC-----LPTTKLFKFDGKPLSDPTLYRSLVGGLQYLT--FSRPDIAFAVNTLCQFMHTPTDTHFAAVKRVLRYLAGTLTHGIHFTSGDAHLQAYSDADWAGDVNDRRSTTGYVVFLGNNPISWCAKKQSTVSRSSTEAEY 256          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A2N9GN02_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GN02_FAGSY)

HSP 1 Score: 109 bits (273), Expect = 5.130e-25
Identity = 59/158 (37.34%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGTI-LRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEY 471
            ++  D L +F   +C P+STP  +T  L  TK+      D   F+S+VG L +++  ++ P+++FAV+++ +  + P   H  AA R+ +Y+KG+    L    G++ L+AY DAD+  D +D +S +GY++FLG +PI+W S+ Q +VS S+TEAEY
Sbjct:  275 KYASDLLQRFDMTNCKPSSTPYSSTSRL--TKDQGTPLVDPTSFRSLVGALQYLT--FTRPDLSFAVNQVCQFMHSPTDTHLIAAKRILRYIKGSLSSGLLFQPGSLNLQAYADADWAGDPIDRRSTSGYVVFLGSTPITWVSKKQCTVSRSSTEAEY 428          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A2N9HLR0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLR0_FAGSY)

HSP 1 Score: 109 bits (273), Expect = 7.530e-25
Identity = 59/158 (37.34%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGTI-LRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEY 471
            ++  D L +F   +C P+STP  +T  L  TK+      D   F+S+VG L +++  ++ P+++FAV+++ +  + P   H  AA R+ +Y+KG+    L    G++ L+AY DAD+  D +D +S +GY++FLG +PI+W S+ Q +VS S+TEAEY
Sbjct:  682 KYASDLLQRFAMTNCKPSSTPYSSTSRL--TKDQGTPLVDPTSFRSLVGALQYLT--FTRPDLSFAVNQVCQFMHSPTDTHLIAAKRILRYVKGSLSSGLLFQPGSLNLQAYADADWAGDPIDRRSTSGYVVFLGSTPITWVSKKQCTVSRSSTEAEY 835          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A2N9F8I7_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8I7_FAGSY)

HSP 1 Score: 109 bits (273), Expect = 7.740e-25
Identity = 59/158 (37.34%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGTI-LRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEY 471
            ++  D L +F   +C P+STP  +T  L  TK+      D   F+S+VG L +++  ++ P+++FAV+++ +  + P   H  AA R+ +Y+KG+    L    G++ L+AY DAD+  D +D +S +GY++FLG +PI+W S+ Q +VS S+TEAEY
Sbjct:  998 KYASDLLQRFAMTNCKPSSTPYSSTSRL--TKDQGTPLVDPTSFRSLVGALQYLT--FTRPDLSFAVNQVCQFMHSPTDTHLIAAKRILRYVKGSLSSGLLFQPGSLNLQAYADADWAGDPIDRRSTSGYVVFLGSTPITWVSKKQCTVSRSSTEAEY 1151          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A507DR08_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR08_9FUNG)

HSP 1 Score: 108 bits (269), Expect = 2.570e-24
Identity = 61/161 (37.89%), Postives = 97/161 (60.25%), Query Frame = 1
Query:    4 FIKDALVKFGFEHCLPASTPMDNTVDLPVTKEY-KAHPD-DVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGTI-LRAYCDADFINDQLDGKSVTGYIIFLGDS-PISWTSQLQKSVSNSTTEAEYL 474
            ++ D L +FG + C P +TPMD T   P   E  K  P+     ++ +VG+L ++    + P+I  AV  L R  + P P+H  AA RV +YL+G    +L IGG  + L  Y DAD+ N+ +D +S+TGY+  +G++ P++W S+ Q +V+ S+TEAEY+
Sbjct:  477 YVNDILERFGMQDCKPVNTPMDQTKLEPYEVENTKTSPNPQEGEYREIVGSLMYLMIC-TRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWASKRQPTVALSSTEAEYM 636          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: A0A1U8Q732_NELNU (uncharacterized protein LOC109115255 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q732_NELNU)

HSP 1 Score: 105 bits (263), Expect = 5.340e-24
Identity = 61/159 (38.36%), Postives = 90/159 (56.60%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGGT--ILRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEY 471
            ++I D L K G + C   STPM+    L           D AR++ +VG L +++ +W  PE++F VH L +  + P  EH  AA +V +YLK      + +      ILR +CD+D+ +  L  +S TGYI  LG+SPISW ++ Q +VS S+TEAEY
Sbjct:  246 KYIMDILTKTGMQDCKLCSTPMEQQKHLIGYSNLLL--SDPARYRKLVGRLVYLTITW--PELSFDVHTLSQFMHEPHQEHLDAAIQVVRYLKDTPTHGVLLSSTNDFILRGFCDSDWASCPLTRRSTTGYITMLGESPISWKTKKQHTVSRSSTEAEY 400          
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Match: UPI001F05A804 (secreted RxLR effector protein 161-like n=1 Tax=Lucilia cuprina TaxID=7375 RepID=UPI001F05A804)

HSP 1 Score: 102 bits (255), Expect = 7.680e-24
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:    1 QFIKDALVKFGFEHCLPASTPMDNTVDLPVT-KEYKAHPDDVARFKSMVGTLAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKALRIGGG-TILRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSNSTTEAEYL 474
            Q+IKD L ++G E+C   +TP++    +  T +  K  P     ++S++G L ++S + + P+I  +V KL +  + P  EH  A  R+ +YLKG  +  L    G T +  + DAD+  D LD KS TG++ F+G+ P+SW S+ Q  V+ S+TEAEY+
Sbjct:   67 QYIKDLLQEYGMENCKAVATPLETNHQVNCTGQNCKEIPQ--RDYQSIIGALMYLSIT-TRPDILHSVAKLAQRNSNPHEEHMQAVKRILRYLKGTVNMKLEYTAGETSIEGFVDADWGGDNLDRKSYTGFVFFIGNCPVSWQSKKQSCVALSSTEAEYM 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.780e-5456.69Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A507DKM5_9FUNG4.510e-2637.89DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A1S3Z698_TOBAC1.630e-2536.71uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6P5RM83_PRUAV1.920e-2541.61uncharacterized protein LOC110747981 n=2 Tax=Prunu... [more]
A0A2N9GN02_FAGSY5.130e-2537.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HLR0_FAGSY7.530e-2537.34Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9F8I7_FAGSY7.740e-2537.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DR08_9FUNG2.570e-2437.89DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A1U8Q732_NELNU5.340e-2438.36uncharacterized protein LOC109115255 n=1 Tax=Nelum... [more]
UPI001F05A8047.680e-2436.25secreted RxLR effector protein 161-like n=1 Tax=Lu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1168contigH-akashiwo_Contig1168:27123..27599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7260.FBpp0244144
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size477
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta,457GT@7147|Diptera,45YIF@7214|Drosophilidae
DescriptionPfam:UBN2_2
Cds size477
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.0755966-CDS-H-akashiwo_Contig1168:27122..275991681387104.0755966-CDS-H-akashiwo_Contig1168:27122..27599Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1168 27123..27599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1168.1.1prot_H-akashiwo_Contig1168.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1168 27123..27599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1168.1.1

>prot_H-akashiwo_Contig1168.1.1 ID=prot_H-akashiwo_Contig1168.1.1|Name=mRNA_H-akashiwo_Contig1168.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=159bp
QFIKDALVKFGFEHCLPASTPMDNTVDLPVTKEYKAHPDDVARFKSMVGT
LAWVSTSWSVPEITFAVHKLQRATNYPGPEHFAAAARVFKYLKGAGHKAL
RIGGGTILRAYCDADFINDQLDGKSVTGYIIFLGDSPISWTSQLQKSVSN
STTEAEYL*
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mRNA from alignment at H-akashiwo_Contig1168:27123..27599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1168.1.1 ID=mRNA_H-akashiwo_Contig1168.1.1|Name=mRNA_H-akashiwo_Contig1168.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1168:27123..27599+ (Heterosigma akashiwo CCMP452)
CAGTTCATAAAGGACGCCTTGGTTAAGTTTGGCTTCGAACATTGTTTGCC TGCGTCCACACCCATGGATAACACAGTGGACTTGCCAGTGACTAAGGAGT ACAAGGCTCACCCTGATGATGTTGCCAGATTTAAATCCATGGTGGGGACA CTAGCTTGGGTATCTACATCATGGTCTGTACCGGAAATCACGTTTGCAGT GCATAAACTCCAACGGGCCACCAACTATCCAGGGCCAGAGCATTTTGCAG CTGCTGCTCGTGTGTTCAAGTACCTAAAAGGTGCTGGACACAAAGCTTTG AGAATCGGAGGTGGAACAATTCTACGAGCATATTGTGATGCTGACTTCAT AAATGACCAACTGGATGGTAAGTCAGTAACTGGATATATTATCTTCCTAG GCGATTCTCCAATATCGTGGACGTCTCAGCTCCAAAAGAGCGTCTCCAAT TCGACTACTGAAGCTGAGTACCTATAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1168:27123..27599+

>mRNA_H-akashiwo_Contig1168.1.1 ID=mRNA_H-akashiwo_Contig1168.1.1|Name=mRNA_H-akashiwo_Contig1168.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1168:27123..27599+ (Heterosigma akashiwo CCMP452)
CAGTTCATAAAGGACGCCTTGGTTAAGTTTGGCTTCGAACATTGTTTGCC
TGCGTCCACACCCATGGATAACACAGTGGACTTGCCAGTGACTAAGGAGT
ACAAGGCTCACCCTGATGATGTTGCCAGATTTAAATCCATGGTGGGGACA
CTAGCTTGGGTATCTACATCATGGTCTGTACCGGAAATCACGTTTGCAGT
GCATAAACTCCAACGGGCCACCAACTATCCAGGGCCAGAGCATTTTGCAG
CTGCTGCTCGTGTGTTCAAGTACCTAAAAGGTGCTGGACACAAAGCTTTG
AGAATCGGAGGTGGAACAATTCTACGAGCATATTGTGATGCTGACTTCAT
AAATGACCAACTGGATGGTAAGTCAGTAACTGGATATATTATCTTCCTAG
GCGATTCTCCAATATCGTGGACGTCTCAGCTCCAAAAGAGCGTCTCCAAT
TCGACTACTGAAGCTGAGTACCTATAG
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