mRNA_H-akashiwo_Contig1167.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1167.1.1
Unique NamemRNA_H-akashiwo_Contig1167.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: A0A8C4XEZ2_ERPCA (Lactose-binding lectin l-2-like n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XEZ2_ERPCA)

HSP 1 Score: 89.4 bits (220), Expect = 6.610e-20
Identity = 55/130 (42.31%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSS 390
            + G CY +  ALKTW +AE  C   ++GG+LAS+HSS  N+F+ TL  +    G +   WLGG N V            S   W+D +KWD+TNW  GEPNN G   E C     FA   G WND++C S
Sbjct:   36 YAGRCYQYFPALKTWIDAEVQCL--SLGGNLASVHSSDANQFITTLIKSKDPSGPVT--WLGGSNCVR----------DSTWLWTDGSKWDFTNWNAGEPNNVGGV-EKCFHI-NFAVQSG-WNDINCVS 148          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: UPI001E1C45FB (ladderlectin-like isoform X1 n=3 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C45FB)

HSP 1 Score: 88.6 bits (218), Expect = 1.490e-19
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSSSSLPSFC 411
            +E +C+      +TW EAE  C   ++G +LAS+HSS E +F+  +   + + G     W+GGF + + I      W     FWSD +K+DY NW  GEPNN G   E C+    F  + G WNDL+C +  LPS C
Sbjct:   35 YESHCFMFIKTARTWAEAERHCI--SLGANLASVHSSEEAQFLQGV--VFSETGEFTPTWIGGFEDPKEILEKGRLW-----FWSDGSKFDYQNWNQGEPNNSGGR-EPCIVM-NFGGEQG-WNDLECGNV-LPSVC 158          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: UPI00196558C5 (lectin-like isoform X1 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI00196558C5)

HSP 1 Score: 85.5 bits (210), Expect = 3.250e-18
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   13 CYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSS 390
            CY +    KTW +AE  C   ++GG+LAS+HSS++N+F+ +L  +    G     WLGG N V+           S   W+D ++WD+ NW  GEPNN G   EHCL         G WND++C++
Sbjct:   45 CYQYFPMQKTWTDAELYCV--SLGGNLASVHSSSDNQFITSLIRSRDSSG--PTTWLGGSNSVQ----------TSSWLWTDGSQWDFANWNPGEPNNVGGT-EHCLHTNFLVQ--GGWNDINCAN 153          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: A0A8C7V0I6_ONCMY (C-type lectin domain-containing protein n=2 Tax=Salmoninae TaxID=504568 RepID=A0A8C7V0I6_ONCMY)

HSP 1 Score: 85.5 bits (210), Expect = 4.070e-18
Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLT--WGRFASDLGLWNDLDCSSSSLPSFC 411
            F   C+      ++W  AE  C   ++G +LAS+HSSAE +F+  +  A C  GG    W+GGF+ V+            L FWSD +++DY NW+ GEPNN G   E C+   WG    D   WND++C +S  PS C
Sbjct:   60 FGSRCFMFVETARSWPLAERHCV--SLGANLASVHSSAEYQFLQAI--AGCKTGGFSTTWIGGFDAVQ----------DRLWFWSDGSEFDYQNWKKGEPNNSGGR-EPCIVINWG----DEYRWNDMNCGNS-FPSVC 178          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: UPI001E1C7218 (ladderlectin-like n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C7218)

HSP 1 Score: 84.0 bits (206), Expect = 9.070e-18
Identity = 51/137 (37.23%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSSSSLPSFC 411
            +  +C+      +TW EAE  C   ++G +LAS+HSS E +F+  +   + + G     W+GGF   + I      W     FWSD +K+DY NW  GEPNN G   E C+    F  + G WNDL C +  LPS C
Sbjct:   35 YRSHCFMFIKTARTWPEAERHCI--SLGANLASVHSSEEAQFLQGM--VFSETGEFHTTWIGGFEAGKEILEKGRLW-----FWSDGSKFDYQNWNQGEPNNSGGR-EPCIVM-NFGGEHG-WNDLACGNR-LPSVC 158          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: A0A3P8ZVC8_ESOLU (C-type lectin domain-containing protein n=6 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZVC8_ESOLU)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-17
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSSSSLPSFCK 414
            +  +CY ++   +TW +AE  C   ++GG+L SIH++ ENE +  +   +         W+GG +           +E  + FWSD TK+DY+NW  GEPNN G   EHC          G WNDL C  + LPS CK
Sbjct:   47 YNSHCYIYDNTARTWSQAEKYCL--SLGGNLVSIHNAGENEAVKNV--VFRATNSYPWTWIGGSD----------IYETKVWFWSDGTKFDYSNWANGEPNNGGGK-EHCGQTNY--QGAGYWNDLRCELT-LPSVCK 166          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: UPI0019651169 (lectin-like n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019651169)

HSP 1 Score: 83.2 bits (204), Expect = 1.530e-17
Identity = 52/126 (41.27%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   13 CYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSS 390
            CY +    K W +AE  C   ++GG+LAS+HSS +N+F+ +L  +    G     WLGG N V  ISS    W      W+D +KWD+ NW  GEPNN G   EHC      A   G WND+DC++
Sbjct:   38 CYQYFPMRKAWIDAELYCV--SLGGNLASVHSSGDNQFITSLIRSRDTSG--PTSWLGGSNCVR-ISS----W-----LWTDGSKWDFANWNPGEPNNVGGI-EHCFHTNFVAQ--GGWNDIDCAT 146          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: UPI001962862E (ladderlectin-like n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001962862E)

HSP 1 Score: 82.4 bits (202), Expect = 3.190e-17
Identity = 51/128 (39.84%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDC 384
            F   CY    A K W +AE  C   ++GGHLAS+HSS  N+F+ +L  +    G +   W GG N V+           S   W+D +KWDYTNW  GEPNN G   E C      A   G WND+ C
Sbjct:   36 FSDRCYQFFPAKKAWIDAELHCV--SLGGHLASVHSSDVNQFITSLVKSKDSSGPVT--WFGGSNCVQA----------STWLWTDGSKWDYTNWNQGEPNNAGGT-ERCFRINDSAQ--GGWNDVSC 146          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: A0A8C2CYT5_CYPCA (Ladderlectin-like n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2CYT5_CYPCA)

HSP 1 Score: 82.4 bits (202), Expect = 3.510e-17
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   13 CYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDCSS 390
            C+ +   LK+W EAE  C E  +GG+LASIH+   + F+ T    Y  G G  + W+G ++  +     N  W     FWSD +K+++++W  GEPNN G   E+C+  G    D   WND +CS+
Sbjct:   40 CFKYFSELKSWAEAEKQCVE--LGGNLASIHNQLTHNFLKTFVKKY--GKGNTRTWIGAYDAPQ-----NFIW-----FWSDGSKFEFSDWHSGEPNNSGG-NENCVEMGY--GDENRWNDAECST 148          
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Match: UPI00109F12E0 (lectin-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109F12E0)

HSP 1 Score: 82.0 bits (201), Expect = 4.290e-17
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAYCDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEPNNYGTPGEHCLTWGRFASDLGLWNDLDC 384
            + G CY     +KTW +AE  C    +GGHLAS+H++ +N+F+          G     WLG  N          + + SL  W+D +KWD+TNW  GEPNN     E CL +  +A + G WND+DC
Sbjct:   33 YSGQCYQFFSLMKTWSDAETFCFN--LGGHLASVHNADDNKFITNFIKRKDMSG--PTIWLGASN----------YQQISLWLWTDGSKWDFTNWNTGEPNNSNNV-ERCLHF-NYAVEGG-WNDVDC 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C4XEZ2_ERPCA6.610e-2042.31Lactose-binding lectin l-2-like n=4 Tax=Polypterid... [more]
UPI001E1C45FB1.490e-1937.96ladderlectin-like isoform X1 n=3 Tax=Coregonus clu... [more]
UPI00196558C53.250e-1838.10lectin-like isoform X1 n=1 Tax=Polypterus senegalu... [more]
A0A8C7V0I6_ONCMY4.070e-1838.13C-type lectin domain-containing protein n=2 Tax=Sa... [more]
UPI001E1C72189.070e-1837.23ladderlectin-like n=1 Tax=Coregonus clupeaformis T... [more]
A0A3P8ZVC8_ESOLU1.070e-1736.23C-type lectin domain-containing protein n=6 Tax=Es... [more]
UPI00196511691.530e-1741.27lectin-like n=1 Tax=Polypterus senegalus TaxID=552... [more]
UPI001962862E3.190e-1739.84ladderlectin-like n=1 Tax=Polypterus senegalus Tax... [more]
A0A8C2CYT5_CYPCA3.510e-1736.51Ladderlectin-like n=2 Tax=Cyprinus carpio TaxID=79... [more]
UPI00109F12E04.290e-1737.50lectin-like n=1 Tax=Erpetoichthys calabaricus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1167contigH-akashiwo_Contig1167:117834..118247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8010.XP_010864555.1
PFAMsLectin_C
Model size414
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.14e-19
EggNOG OGsKOG4297@1|root,KOG4297@2759|Eukaryota,39NU5@33154|Opisthokonta,3CQCJ@33208|Metazoa,3E6IG@33213|Bilateria,48S20@7711|Chordata,49NHN@7742|Vertebrata,4A9CY@7898|Actinopterygii
DescriptionC-type lectin (CTL) or carbohydrate-recognition domain (CRD)
Cds size414
COG categoryTV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.0491455-CDS-H-akashiwo_Contig1167:117833..1182471681387104.0491455-CDS-H-akashiwo_Contig1167:117833..118247Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1167 117834..118247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1167.1.1prot_H-akashiwo_Contig1167.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1167 117834..118247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1167.1.1

>prot_H-akashiwo_Contig1167.1.1 ID=prot_H-akashiwo_Contig1167.1.1|Name=mRNA_H-akashiwo_Contig1167.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=138bp
FEGYCYHHNIALKTWHEAEDACQEHAVGGHLASIHSSAENEFMDTLCDAY
CDGGGMKQHWLGGFNEVEGISSTNVFWEPSLAFWSDKTKWDYTNWEGGEP
NNYGTPGEHCLTWGRFASDLGLWNDLDCSSSSLPSFCK
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mRNA from alignment at H-akashiwo_Contig1167:117834..118247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1167.1.1 ID=mRNA_H-akashiwo_Contig1167.1.1|Name=mRNA_H-akashiwo_Contig1167.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=414bp|location=Sequence derived from alignment at H-akashiwo_Contig1167:117834..118247+ (Heterosigma akashiwo CCMP452)
TTTGAGGGGTACTGCTACCACCATAATATCGCTCTAAAAACTTGGCACGA GGCTGAAGATGCATGCCAGGAACATGCTGTTGGAGGACACCTGGCTTCCA TCCACAGCTCAGCCGAGAATGAGTTCATGGATACTTTGTGTGATGCTTAT TGTGATGGTGGGGGTATGAAGCAACACTGGCTTGGCGGATTCAATGAAGT AGAAGGTATTTCTTCTACAAATGTATTTTGGGAACCTTCACTAGCATTCT GGTCAGACAAAACAAAGTGGGATTACACAAATTGGGAGGGTGGCGAGCCA AACAACTATGGGACTCCTGGTGAACATTGCTTAACATGGGGCCGTTTTGC TTCTGATTTGGGGTTATGGAATGATTTAGACTGCTCTTCTTCGTCTTTAC CATCCTTCTGCAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1167:117834..118247+

>mRNA_H-akashiwo_Contig1167.1.1 ID=mRNA_H-akashiwo_Contig1167.1.1|Name=mRNA_H-akashiwo_Contig1167.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=414bp|location=Sequence derived from alignment at H-akashiwo_Contig1167:117834..118247+ (Heterosigma akashiwo CCMP452)
TTTGAGGGGTACTGCTACCACCATAATATCGCTCTAAAAACTTGGCACGA
GGCTGAAGATGCATGCCAGGAACATGCTGTTGGAGGACACCTGGCTTCCA
TCCACAGCTCAGCCGAGAATGAGTTCATGGATACTTTGTGTGATGCTTAT
TGTGATGGTGGGGGTATGAAGCAACACTGGCTTGGCGGATTCAATGAAGT
AGAAGGTATTTCTTCTACAAATGTATTTTGGGAACCTTCACTAGCATTCT
GGTCAGACAAAACAAAGTGGGATTACACAAATTGGGAGGGTGGCGAGCCA
AACAACTATGGGACTCCTGGTGAACATTGCTTAACATGGGGCCGTTTTGC
TTCTGATTTGGGGTTATGGAATGATTTAGACTGCTCTTCTTCGTCTTTAC
CATCCTTCTGCAAA
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