mRNA_H-akashiwo_Contig1166.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1166.6.1
Unique NamemRNA_H-akashiwo_Contig1166.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A3P3XNL0_9SPIR (HTH OST-type domain-containing protein n=4 Tax=Spirochaetales TaxID=136 RepID=A0A3P3XNL0_9SPIR)

HSP 1 Score: 160 bits (405), Expect = 1.820e-46
Identity = 76/146 (52.05%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 KETVQKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            K   Q +LA+L+DA+N  P ++D LL E+AKYG   ++RI+GDW +  L+GW+ ++ E+ + PV Q+ +   K  +D+A+IID MDLL+TE  +LDGF I SSDSDFT L  RLR+D KLV+G G+RK+P PFV+ CD FIY E L
Sbjct:    2 KTDPQLKLAVLVDADNTQPAIIDGLLAEIAKYGIASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFAYTTGKNSTDSAMIIDAMDLLYTE--NLDGFCIVSSDSDFTRLAARLREDGKLVLGFGQRKTPKPFVAACDKFIYTEIL 145          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A3C1C7C7_9SPIO (Maebl n=4 Tax=Spirochaetes TaxID=203691 RepID=A0A3C1C7C7_9SPIO)

HSP 1 Score: 160 bits (405), Expect = 1.820e-46
Identity = 76/146 (52.05%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 KETVQKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            K   Q +LA+LIDA+N  P ++D LL E+AKYG   ++RI+GDW +  L+GW+ ++ E+ + PV Q+ +   K  +D+A+IID MDLL+TE  +LDGF + SSDSDFT L  RLR+D KLV+G G+RK+P PFV+ CD FIY E L
Sbjct:    2 KSDPQLKLAVLIDADNTQPTIIDGLLAEIAKYGVASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFAYTTGKNSTDSAMIIDAMDLLYTE--NLDGFCLVSSDSDFTRLAARLREDGKLVLGFGQRKTPKPFVAACDKFIYTEIL 145          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A7C4QDA4_9SPIR (NYN domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C4QDA4_9SPIR)

HSP 1 Score: 159 bits (403), Expect = 4.060e-46
Identity = 76/146 (52.05%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    1 KETVQKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            K   Q +LA+LIDA+N  P +++ LL E+AKYG   ++RI+GDW +  L+GW+ ++ E+ + PV Q+++   K  +D+A+IID MDLL+TE  +LDGF I SSDSDFT L  RLR+D KLV+G G+RK+P PFV+ CD FIY E L
Sbjct:    3 KSESQLKLAVLIDADNTQPSIIEGLLAEIAKYGIASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFSYTTGKNSTDSAMIIDAMDLLYTE--NLDGFCIVSSDSDFTRLAARLREDGKLVLGFGQRKTPKPFVAACDKFIYTEIL 146          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A7C4X682_9SPIR (NYN domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C4X682_9SPIR)

HSP 1 Score: 155 bits (393), Expect = 1.110e-44
Identity = 75/142 (52.82%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   13 QKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            Q +LA+LIDA+N PP +++ LL EVAKYG   ++RI+GDW +  LK W+  + ++ + P+ Q+++   K  +D+ALIID MDLL+TE   LDGF I SSDSDFT L  RLR+  KLV+G GERK+P PFV+ CD FI+ E L
Sbjct:   12 QLKLAMLIDADNTPPAIIEGLLAEVAKYGIASVKRIYGDWTAPNLKQWKESLLQYAIQPIQQFSYTSGKNATDSALIIDAMDLLYTEK--LDGFCIVSSDSDFTRLAARLREAGKLVLGFGERKTPKPFVAACDKFIFTEIL 151          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: B4S4I9_PROA2 (HTH OST-type domain-containing protein n=2 Tax=Prosthecochloris TaxID=1101 RepID=B4S4I9_PROA2)

HSP 1 Score: 155 bits (392), Expect = 1.370e-44
Identity = 75/141 (53.19%), Postives = 98/141 (69.50%), Query Frame = 1
Query:   16 KRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            +RLA+LIDA+N    ++D LL E+AKYG   ++RI+GDW S LLKGW+  + EH + P+ Q+ + K K  +D+A+IID MDLL+T     DGF I SSDSDFT L  R+R+    V G GE+K+P PFVS CD FIYIE L
Sbjct:    7 QRLAVLIDADNTQASIIDGLLSEIAKYGVASVRRIYGDWTSPLLKGWKEILLEHSIQPIQQFGYTKGKNATDSAMIIDAMDLLYTGK--FDGFCIVSSDSDFTKLASRIRESGLFVFGFGEKKTPSPFVSACDKFIYIEVL 145          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A5C9D6T3_9SPIR (HTH OST-type domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A5C9D6T3_9SPIR)

HSP 1 Score: 155 bits (392), Expect = 1.400e-44
Identity = 72/142 (50.70%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   13 QKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            Q +LA+L+DA+N    +++ LL E+AKYG   ++RI+GDW +  L+ W+ K+ E+ + PV Q+++   K  +D+A+IID MDLL+TE  +LDGF + SSDSDFT L  RLR+D KLV+G G+RK+P PFV+ CD FIY E L
Sbjct:    7 QSKLAVLVDADNTQATIIEGLLAEIAKYGVASVKRIYGDWTNTNLRSWKDKLLEYAIQPVQQFSYTSGKNATDSAMIIDAMDLLYTE--NLDGFCVVSSDSDFTRLAARLREDGKLVLGFGQRKTPKPFVAACDKFIYTEIL 146          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A558D0D0_9GAMM (NYN domain-containing protein n=3 Tax=Sedimenticola TaxID=349742 RepID=A0A558D0D0_9GAMM)

HSP 1 Score: 153 bits (386), Expect = 8.800e-44
Identity = 73/140 (52.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   19 RLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            RLA+LIDA+N  P ++D LL E+A YG   ++RI+GDW S  LKGW+  + EH + P+ Q+ + K K  +D+A+IID MDLL+T   + +GF I SSDSDFT L  R+R+   LV G GE+K+P PFVS CD FIY E L
Sbjct:    6 RLAVLIDADNAQPSIVDGLLSEIANYGTASVKRIYGDWTSPGLKGWKEVLLEHSIQPMQQFAYTKGKNATDSAMIIDAMDLLYTN--NFNGFCIVSSDSDFTKLASRIRESGLLVYGFGEKKTPAPFVSACDKFIYTEVL 143          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A652ZSK6_9SPIR (HTH OST-type domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A652ZSK6_9SPIR)

HSP 1 Score: 153 bits (386), Expect = 1.560e-43
Identity = 73/146 (50.00%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    1 KETVQKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            +E  Q +LA+LIDA+N    +++ LL E+AKYG   ++RI+GDW +  L+ W+ K+ E  + PV Q+++   K  +D+A+IID MDLL+TE  +LDGF I SSDSDFT L  RLR+D K+V+G G+RK+P PFV+ CD F+Y E L
Sbjct:   12 REQSQLKLAVLIDADNTQAKIVEGLLAEIAKYGVASVKRIYGDWTNTNLRSWKDKLLEFAVQPVQQFSYTSGKNSTDSAMIIDAMDLLYTE--NLDGFCIVSSDSDFTRLAARLREDGKMVLGFGQRKTPKPFVAACDKFLYTEIL 155          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A3R7HJC1_9CHLB (NYN domain-containing protein n=1 Tax=Prosthecochloris sp. ZM_2 TaxID=2045206 RepID=A0A3R7HJC1_9CHLB)

HSP 1 Score: 152 bits (385), Expect = 1.730e-43
Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 1
Query:   16 KRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            +R+A+LIDA+N  P ++D LL E+AKYG   ++RI+GDW S +LKGW+  + EH + P+ Q+ + + K  +D+A+IID MDLL+T     D F I SSDSDFT L  R+R+   LV G GE+K+P PFVS CD FIY E L
Sbjct:    7 ERIAVLIDADNTRPSIIDGLLAEIAKYGVASVRRIYGDWTSSMLKGWKEVLLEHSVQPIQQFGYTRGKNATDSAMIIDAMDLLYTGK--FDAFCIVSSDSDFTRLASRIRESGLLVYGFGEKKTPAPFVSACDKFIYTEVL 145          
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Match: A0A4S4B1S6_9RHOO (NYN domain-containing protein n=1 Tax=Azoarcus nasutitermitis TaxID=2565930 RepID=A0A4S4B1S6_9RHOO)

HSP 1 Score: 152 bits (384), Expect = 1.860e-43
Identity = 71/144 (49.31%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    7 TVQKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL 438
            T + R+ALLIDA+N P   ++ +L E+AKYG   ++R +G+W+S  LKGW   + E+ + P+ Q+ + K K  +D+A+IID MDLL+T+   LD F IASSDSDFTPLV+R+R +   V G GE+K+P PFV+ C  F+Y+ETL
Sbjct:    2 TEESRIALLIDADNCPAAKIEVILDELAKYGVTNVRRAYGNWKSSGLKGWEEVLHEYAIQPIQQFAYTKGKNATDSAMIIDAMDLLYTQK--LDAFCIASSDSDFTPLVMRIRANGLKVYGFGEKKTPMPFVNACSRFLYLETL 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1166.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P3XNL0_9SPIR1.820e-4652.05HTH OST-type domain-containing protein n=4 Tax=Spi... [more]
A0A3C1C7C7_9SPIO1.820e-4652.05Maebl n=4 Tax=Spirochaetes TaxID=203691 RepID=A0A3... [more]
A0A7C4QDA4_9SPIR4.060e-4652.05NYN domain-containing protein n=1 Tax=Spirochaetes... [more]
A0A7C4X682_9SPIR1.110e-4452.82NYN domain-containing protein n=1 Tax=Spirochaetes... [more]
B4S4I9_PROA21.370e-4453.19HTH OST-type domain-containing protein n=2 Tax=Pro... [more]
A0A5C9D6T3_9SPIR1.400e-4450.70HTH OST-type domain-containing protein n=1 Tax=Spi... [more]
A0A558D0D0_9GAMM8.800e-4452.14NYN domain-containing protein n=3 Tax=Sedimenticol... [more]
A0A652ZSK6_9SPIR1.560e-4350.00HTH OST-type domain-containing protein n=3 Tax=roo... [more]
A0A3R7HJC1_9CHLB1.730e-4351.06NYN domain-containing protein n=1 Tax=Prosthecochl... [more]
A0A4S4B1S6_9RHOO1.860e-4349.31NYN domain-containing protein n=1 Tax=Azoarcus nas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1166contigH-akashiwo_Contig1166:252130..252567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog290512.Paes_1873
PFAMsNYN,OST-HTH
Model size438
Max annot lvl1090|Chlorobi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.24e-45
EggNOG OGsCOG1432@1|root,COG1432@2|Bacteria,1FECY@1090|Chlorobi
DescriptionOST-HTH/LOTUS domain
Cds size438
COG categoryNU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387104.0144098-CDS-H-akashiwo_Contig1166:252129..2525671681387104.0144098-CDS-H-akashiwo_Contig1166:252129..252567Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1166 252130..252567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1166.6.1prot_H-akashiwo_Contig1166.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1166 252130..252567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1166.6.1

>prot_H-akashiwo_Contig1166.6.1 ID=prot_H-akashiwo_Contig1166.6.1|Name=mRNA_H-akashiwo_Contig1166.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=146bp
KETVQKRLALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLK
GWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVI
ASSDSDFTPLVLRLRKDNKLVVGVGERKSPWPFVSVCDHFIYIETL
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mRNA from alignment at H-akashiwo_Contig1166:252130..252567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1166.6.1 ID=mRNA_H-akashiwo_Contig1166.6.1|Name=mRNA_H-akashiwo_Contig1166.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=438bp|location=Sequence derived from alignment at H-akashiwo_Contig1166:252130..252567+ (Heterosigma akashiwo CCMP452)
AAAGAAACAGTCCAAAAACGACTCGCACTGTTGATTGATGCAGAAAACAT ACCCCCATGTGTCATGGACAAGTTGCTGCCTGAGGTAGCAAAGTATGGTG AAGTCAAAATGCAACGCATTTTTGGAGACTGGGAATCTGATTTATTGAAA GGGTGGAGAACAAAAGTCACGGAACATGATCTGGTTCCAGTGCACCAGTA TACTTTTGTAAAAAAAAAAGGCTTCTCTGATGCAGCACTCATCATCGACT GCATGGATCTGCTACACACGGAGGCAGAGGATCTTGATGGGTTTGTGATT GCCAGCAGTGACTCAGACTTCACACCCCTAGTCCTGCGTCTACGGAAGGA CAACAAATTGGTGGTGGGTGTTGGTGAGAGAAAGAGCCCTTGGCCCTTTG TCTCTGTCTGTGATCACTTTATCTATATTGAGACACTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1166:252130..252567+

>mRNA_H-akashiwo_Contig1166.6.1 ID=mRNA_H-akashiwo_Contig1166.6.1|Name=mRNA_H-akashiwo_Contig1166.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=438bp|location=Sequence derived from alignment at H-akashiwo_Contig1166:252130..252567+ (Heterosigma akashiwo CCMP452)
AAAGAAACAGTCCAAAAACGACTCGCACTGTTGATTGATGCAGAAAACAT
ACCCCCATGTGTCATGGACAAGTTGCTGCCTGAGGTAGCAAAGTATGGTG
AAGTCAAAATGCAACGCATTTTTGGAGACTGGGAATCTGATTTATTGAAA
GGGTGGAGAACAAAAGTCACGGAACATGATCTGGTTCCAGTGCACCAGTA
TACTTTTGTAAAAAAAAAAGGCTTCTCTGATGCAGCACTCATCATCGACT
GCATGGATCTGCTACACACGGAGGCAGAGGATCTTGATGGGTTTGTGATT
GCCAGCAGTGACTCAGACTTCACACCCCTAGTCCTGCGTCTACGGAAGGA
CAACAAATTGGTGGTGGGTGTTGGTGAGAGAAAGAGCCCTTGGCCCTTTG
TCTCTGTCTGTGATCACTTTATCTATATTGAGACACTC
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