mRNA_H-akashiwo_Contig1164.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1164.4.1
Unique NamemRNA_H-akashiwo_Contig1164.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1164.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1164contigH-akashiwo_Contig1164:82233..83854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog88036.EFJ07070
PFAMsGlyco_transf_8,UDP-g_GGTase
Model size148
Max annot lvl35493|Streptophyta
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003980,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006011,GO:0006139,GO:0006457,GO:0006458,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006515,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009626,GO:0009719,GO:0009725,GO:0009751,GO:0009812,GO:0009987,GO:0010033,GO:0010204,GO:0010243,GO:0010498,GO:0012501,GO:0012505,GO:0014070,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0023052,GO:0030163,GO:0030968,GO:0031347,GO:0031349,GO:0033554,GO:0034050,GO:0034620,GO:0034641,GO:0034645,GO:0034976,GO:0035251,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0042221,GO:0042440,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0046283,GO:0046483,GO:0046527,GO:0046677,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051603,GO:0051716,GO:0051788,GO:0055086,GO:0065007,GO:0070085,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0080134,GO:0097359,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901700
Exons2
Evalue1.45e-05
EggNOG OGsKOG1879@1|root,KOG1879@2759|Eukaryota,37KVS@33090|Viridiplantae,3G8N2@35493|Streptophyta
DescriptionUDP-glucose glycoprotein
Cds size147
COG categoryG
CAZyGT24
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.6245902-CDS-H-akashiwo_Contig1164:82232..823041681387103.6245902-CDS-H-akashiwo_Contig1164:82232..82304Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1164 82233..82304 +
1681387103.639417-CDS-H-akashiwo_Contig1164:83778..838531681387103.639417-CDS-H-akashiwo_Contig1164:83778..83853Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1164 83779..83853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1164.4.1prot_H-akashiwo_Contig1164.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1164 82233..83853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1164.4.1

>prot_H-akashiwo_Contig1164.4.1 ID=prot_H-akashiwo_Contig1164.4.1|Name=mRNA_H-akashiwo_Contig1164.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
YRFALPGHQGGVGGALFSRLPRSQVLTARPDVPEAWDVQAARAAHDLDN
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mRNA from alignment at H-akashiwo_Contig1164:82233..83854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1164.4.1 ID=mRNA_H-akashiwo_Contig1164.4.1|Name=mRNA_H-akashiwo_Contig1164.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1622bp|location=Sequence derived from alignment at H-akashiwo_Contig1164:82233..83854+ (Heterosigma akashiwo CCMP452)
TACAGGTTTGCCCTTCCTGGCCACCAGGGTGGTGTTGGGGGCGCTCTGTT
CAGCAGGCTTCCTCGTTCACAGGTACAACACGGGAATGTTGGAAATATAA
TGGATAGACACACACTATATACTACAACAAGCATATTGATTGCAGGGTGT
TGGGTTTGAACAGAGAAACCGTTTTCATCATCAGTGAATATATAGCTCCA
TGTTGCCAAGAAGGCGATATATGTCAAAGGTTTTTTAAATCATTATTATC
ACTTCATATGACAACTATGCTGTATTTCGGCTACTAAAAGCCACGGTCGG
TGGCTCTGCTCCTTCTCCCACCGGCCTTCTTCAGGCTGCCTCTGAGTATA
AACGATAAACCAAATGAAGATATGGGACATGAATGAAAGAAGAAGAATGG
ATTGCTCAACAAAAATGAAAAGCAGTACCGGCAGACAAGCCACCACCACC
ACCAGTCATTCTTGCTTCATGCGCACCTCAGCTTGTATTAGAATGCTTTG
ATTGACAACTACTTCTAATATATATATATTCTTCGTACTTACACCTACAT
TTGAGCTTATAAAGTCTGAACAGAAATACATGCCTTCATAGATTGTACAG
TTTTGGCACCCTCCATCATCCTCAATGAAGCAGGTAGATTGAAAAATGAA
TTAATGTGGGCGAATCAGTGAATAAATCAAAGGAGCATTATCACTGTCTG
TTAAAGGTTGCAACGTTTTGATTGAAAAAATTCTGGCTAACTAGATAAAA
GGCTACTCTACAACAACACCCCATTCCATGACAAGGATGCAGACATTTTG
TACATATATAGAAATACTGTTGTAAAGTAGCGATAGCTCGTCCGACGACG
AAGTGTTCAGATGATGATGGATAAAAAAAAAAAAAATTAAAAAGGCACCC
TGCAAAAAAAAAAAAAGAGAAGTGGTTGTCGCTCAGGATGTTAGAGGAGC
ACAATGTTTTTTTTTCAACAAGTCTATGTGTATCAAATAATGTATGGTAC
AATGCCACCCCCCACTACACGGTGGCACACTTCATCATTGCCTTTGTACC
CATCATAGCCAGAGTTCTAGCAATGTCATTTGAGTAGTATCTTTGGTATA
GGAGTGACCTCATCAGCTACTCCTGCAGCCCTAGACTGTGCGTCGTTGTG
GACTGCTTGTCAATGTTCCAGTTGCCCATGGCTCCGCCTCGTTTCCACCA
CTCCTCCAGACTTTCCTTCTTCAAAACTCTCTCTTTCAGTCTCCCAATCT
CCCCCCACCTTGGCGATTATATCTTTCTCCTCCCTTCTGCCTTCCTCCGC
CCTGCTTTGTTTTTAGTCAGACCACCAGGTCACTGGGTACTATAGACCGC
ACAATGATGTCAGACCTCATCAAAGAAAGTACATTATTTGGCACGCCCAG
TGCAAGTCATAGGAACGTAGAAAAAAGAAGAAGGAGAGAAGAGTTTCATC
CCTGGGCCACCGCCAGCACCTGGTGGCCGGTCAGTCGTTTGATTGGCTAT
AAATAAAATCTTAAGCCGTTTGATTGGCTATAAATAAAATATTAAGGTGC
TGACCGCGCGGCCGGACGTCCCCGAGGCCTGGGACGTGCAGGCCGCGCGC
GCCGCCCACGATCTCGACAACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1164:82233..83854+

>mRNA_H-akashiwo_Contig1164.4.1 ID=mRNA_H-akashiwo_Contig1164.4.1|Name=mRNA_H-akashiwo_Contig1164.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig1164:82233..83854+ (Heterosigma akashiwo CCMP452)
TACAGGTTTGCCCTTCCTGGCCACCAGGGTGGTGTTGGGGGCGCTCTGTT
CAGCAGGCTTCCTCGTTCACAGGTGCTGACCGCGCGGCCGGACGTCCCCG
AGGCCTGGGACGTGCAGGCCGCGCGCGCCGCCCACGATCTCGACAAC
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