mRNA_H-akashiwo_Contig1162.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1162.8.1
Unique NamemRNA_H-akashiwo_Contig1162.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1162.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1162contigH-akashiwo_Contig1162:157045..157728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size684
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.8073902-UTR-H-akashiwo_Contig1162:157044..1570521681387102.8073902-UTR-H-akashiwo_Contig1162:157044..157052Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1162 157045..157052 +
1681387102.8262131-UTR-H-akashiwo_Contig1162:157601..1577281681387102.8262131-UTR-H-akashiwo_Contig1162:157601..157728Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1162 157602..157728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.8175976-CDS-H-akashiwo_Contig1162:157052..1576011681387102.8175976-CDS-H-akashiwo_Contig1162:157052..157601Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 157053..157601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1162.8.1prot_H-akashiwo_Contig1162.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1162 157053..157601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1162.8.1

>prot_H-akashiwo_Contig1162.8.1 ID=prot_H-akashiwo_Contig1162.8.1|Name=mRNA_H-akashiwo_Contig1162.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=183bp
MMIPQKLRNPPSLQRLNSPRLQRRAPRYPLLQRRRLLLLRAMMIPQKLRN
PPNLQRLNSPRLRRSKCPPSPQRLKSPHAAPPVEKAKVTATQPNSSSSGA
RRIKDFSYVDSKLSKTAGSDEVKPAKTEKPKPANTSRTEMASEEMKKVVF
DQSLVRRKALNNFDHLDRYIVKGDEEEQETKK*
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mRNA from alignment at H-akashiwo_Contig1162:157045..157728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1162.8.1 ID=mRNA_H-akashiwo_Contig1162.8.1|Name=mRNA_H-akashiwo_Contig1162.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=684bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:157045..157728+ (Heterosigma akashiwo CCMP452)
TGAGGGCGATGATGATTCCACAAAAGCTGAGGAACCCACCAAGCCTGCAA
AGGCTGAACAGCCCGCGCCTGCAAAGGAGGGCACCAAGGTATCCGTTGCT
GCAGCGACGGCGGCTGCTTCTTCTGAGGGCGATGATGATTCCACAAAAGC
TGAGGAACCCACCAAACCTGCAAAGGCTGAACAGCCCGCGCCTGCGAAGG
TCGAAATGCCCACCAAGCCCTCAAAGGTTGAAAAGCCCACACGCCGCACC
ACCTGTGGAAAAGGCCAAAGTGACAGCTACTCAACCAAACTCTAGCTCCT
CTGGTGCAAGAAGAATCAAGGACTTCAGTTATGTAGACAGCAAACTGAGC
AAAACAGCAGGCAGTGATGAAGTCAAGCCTGCTAAGACCGAGAAGCCAAA
ACCTGCAAACACATCACGGACTGAAATGGCCTCTGAAGAAATGAAGAAAG
TGGTTTTTGACCAATCCCTAGTAAGAAGAAAGGCTCTCAACAACTTTGAT
CACCTTGACAGGTATATTGTAAAGGGTGATGAGGAAGAGCAAGAGACAAA
GAAGTAGCTGAATTCTTAGCGGGCCAAGAGGAAAAGAAAGGGAAGTTGTG
GAGTCTTTTTATATCTTCTTGCGTTCTTTTTTATTTTTTAGTACACATGA
TGAAAACGAATAATAGAGGGATATATTGAATGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1162:157045..157728+

>mRNA_H-akashiwo_Contig1162.8.1 ID=mRNA_H-akashiwo_Contig1162.8.1|Name=mRNA_H-akashiwo_Contig1162.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=549bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:157045..157728+ (Heterosigma akashiwo CCMP452)
ATGATGATTCCACAAAAGCTGAGGAACCCACCAAGCCTGCAAAGGCTGAA
CAGCCCGCGCCTGCAAAGGAGGGCACCAAGGTATCCGTTGCTGCAGCGAC
GGCGGCTGCTTCTTCTGAGGGCGATGATGATTCCACAAAAGCTGAGGAAC
CCACCAAACCTGCAAAGGCTGAACAGCCCGCGCCTGCGAAGGTCGAAATG
CCCACCAAGCCCTCAAAGGTTGAAAAGCCCACACGCCGCACCACCTGTGG
AAAAGGCCAAAGTGACAGCTACTCAACCAAACTCTAGCTCCTCTGGTGCA
AGAAGAATCAAGGACTTCAGTTATGTAGACAGCAAACTGAGCAAAACAGC
AGGCAGTGATGAAGTCAAGCCTGCTAAGACCGAGAAGCCAAAACCTGCAA
ACACATCACGGACTGAAATGGCCTCTGAAGAAATGAAGAAAGTGGTTTTT
GACCAATCCCTAGTAAGAAGAAAGGCTCTCAACAACTTTGATCACCTTGA
CAGGTATATTGTAAAGGGTGATGAGGAAGAGCAAGAGACAAAGAAGTAG
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