mRNA_H-akashiwo_Contig1162.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1162.7.1
Unique NamemRNA_H-akashiwo_Contig1162.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1162.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1162contigH-akashiwo_Contig1162:156474..157042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size308
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.7228196-CDS-H-akashiwo_Contig1162:156473..1565521681387102.7228196-CDS-H-akashiwo_Contig1162:156473..156552Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 156474..156552 +
1681387102.73673-CDS-H-akashiwo_Contig1162:156815..1570421681387102.73673-CDS-H-akashiwo_Contig1162:156815..157042Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 156816..157042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1162.7.1prot_H-akashiwo_Contig1162.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1162 156474..157042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1162.7.1

>prot_H-akashiwo_Contig1162.7.1 ID=prot_H-akashiwo_Contig1162.7.1|Name=mRNA_H-akashiwo_Contig1162.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
MNKAKANLEAVVAKIPPAARLPLAGVAAASIAILVAKRMLDEFNSGGSAA
VPAPPQQQRPSSRRITNFSYVDSKLSKRPEESTAAGEEGANVPAAAATAT
AS
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mRNA from alignment at H-akashiwo_Contig1162:156474..157042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1162.7.1 ID=mRNA_H-akashiwo_Contig1162.7.1|Name=mRNA_H-akashiwo_Contig1162.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=569bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:156474..157042+ (Heterosigma akashiwo CCMP452)
ATGAACAAAGCAAAAGCAAACCTAGAAGCTGTTGTGGCCAAGATCCCTCC
AGCGGCACGCCTCCCACTTGCTGGAGTTGGTAAGTGGGTGACCAAGTCAT
TGTCATGGACTTTGCTCCCTTCCCCCCATCGGTGCTCCTTAGCTAGTCGA
CGAGCACCTTGCAATTAAGAAAAATATTTGCCTAAAGCTGGAACTTGTAA
GGTTCTCAGCTTGTACATATTGTCCAAAACTAAGCTTCTGTTCATCTTTC
CCTTGTTCTACCATTTGTGCCCCCCCCCGCCTCCCCTCATACGCAGTGAA
CCCTCCACCCCCTACCCCAAcCCCCGCTCCGCGGCACCGCAGCCGCCGCG
AGCATTGCCATCTTGGTGGCCAAGCGCATGCTGGACGAGTTCAACAGCGG
CGGCAGCGCCGCGGTGCCCGCGCCCCCCCAGCAGCAGAGGCCCAGCTCAC
GGAGGATCACGAACTTCAGTTACGTGGACAGCAAGTTGAGCAAAAGACCA
GAAGAAAGCACTGCCGCCGGCGAGGAGGGCGCCAATGTACCCGCTGCTGC
AGCGACGGCGACTGCTTCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1162:156474..157042+

>mRNA_H-akashiwo_Contig1162.7.1 ID=mRNA_H-akashiwo_Contig1162.7.1|Name=mRNA_H-akashiwo_Contig1162.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:156474..157042+ (Heterosigma akashiwo CCMP452)
ATGAACAAAGCAAAAGCAAACCTAGAAGCTGTTGTGGCCAAGATCCCTCC
AGCGGCACGCCTCCCACTTGCTGGAGTTGCCGCCGCGAGCATTGCCATCT
TGGTGGCCAAGCGCATGCTGGACGAGTTCAACAGCGGCGGCAGCGCCGCG
GTGCCCGCGCCCCCCCAGCAGCAGAGGCCCAGCTCACGGAGGATCACGAA
CTTCAGTTACGTGGACAGCAAGTTGAGCAAAAGACCAGAAGAAAGCACTG
CCGCCGGCGAGGAGGGCGCCAATGTACCCGCTGCTGCAGCGACGGCGACT
GCTTCT
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