mRNA_H-akashiwo_Contig1162.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1162.2.1
Unique NamemRNA_H-akashiwo_Contig1162.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A7S4DD44_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD44_HETAK)

HSP 1 Score: 114 bits (286), Expect = 2.640e-28
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDK 171
            QLLSGHCNLGAYLHR GRRDT EC FCGKDEESV HFLLEC+RWDRERNEISDLIDK
Sbjct:  899 QLLSGHCNLGAYLHRFGRRDTPECTFCGKDEESVGHFLLECKRWDRERNEISDLIDK 955
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A7S3Y0N9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0N9_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 3.480e-21
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDKE 174
            QL+SGHCNLG YLHR GRR+T ECA CG + E+V H+LL CRRWDRERNEI DL+ ++
Sbjct:  432 QLVSGHCNLGEYLHRFGRRETPECALCGVEAETVAHYLLRCRRWDRERNEIMDLVKRD 489
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A1B8AA98_FUSPO (Uncharacterized protein n=1 Tax=Fusarium poae TaxID=36050 RepID=A0A1B8AA98_FUSPO)

HSP 1 Score: 55.5 bits (132), Expect = 2.300e-8
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDKEI 177
            QL +G   +  YLHR+G  +T  C  CG++EESV+HFL  C RWD +R  + + +D+E+
Sbjct:   40 QLRTGMARVNRYLHRIGTVETDMCD-CGQEEESVDHFLFRCPRWDEQREHMRN-VDREL 96
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: W9NBX9_FUSOX (Uncharacterized protein n=1 Tax=Fusarium oxysporum f. sp. pisi HDV247 TaxID=1080344 RepID=W9NBX9_FUSOX)

HSP 1 Score: 55.8 bits (133), Expect = 2.830e-8
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDKEI 177
            QL +G   +  YLH +G  +T  C  CG++EE+V+HFL +C RWD +R  + + +D+E+
Sbjct:   40 QLWTGMARVNRYLHWIGALETDICG-CGQEEETVDHFLFQCPRWDEQREHMRNNVDREM 97
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A6J2XJB5_SITOR (uncharacterized protein LOC115879077 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2XJB5_SITOR)

HSP 1 Score: 54.3 bits (129), Expect = 5.030e-8
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLI 165
            Q+LSGH N G+YL ++G+R+  EC +C +  ++ EH +  C RW+  R  I   I
Sbjct:   14 QILSGHGNFGSYLCKIGKREVAECRYCAEPNDTPEHTMFACPRWEEVRMTIGGNI 68
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A1J8QDM2_9AGAM (RNase H type-1 domain-containing protein n=1 Tax=Rhizopogon vesiculosus TaxID=180088 RepID=A0A1J8QDM2_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 5.500e-8
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 LLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLI 165
            L S H  L  +LHR+G+ DT  C  C + EE++ HFL ECR + RER+++++ +
Sbjct:  162 LRSHHIPLNRHLHRIGKSDTPNCTHCPQSEETIHHFLFECRHFHRERHDLTNAL 215
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BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: B8MM56_TALSN (RNase H type-1 domain-containing protein n=1 Tax=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) TaxID=441959 RepID=B8MM56_TALSN)

HSP 1 Score: 56.2 bits (134), Expect = 8.180e-8
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECR 126
            QL +GH  +G YLHR+GRR++LEC  C +  E+V H L ECR
Sbjct:  149 QLKTGHAPIGTYLHRIGRRESLECQACKEPHETVRHVLFECR 190
[Close]
BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A420MUN5_FUSOX (Uncharacterized protein n=1 Tax=Fusarium oxysporum TaxID=5507 RepID=A0A420MUN5_FUSOX)

HSP 1 Score: 56.2 bits (134), Expect = 9.700e-8
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDKEI 177
            QL +G   +  YLHR+G  +T  C  CG++EE+VEHFL  C RWD +R  + + +D+E+
Sbjct:  252 QLRTGMARVNRYLHRIGAAETDTCD-CGQEEETVEHFLFRCPRWDEQREHMRN-VDREM 308
[Close]
BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A420M7C8_FUSOX (Uncharacterized protein n=1 Tax=Fusarium oxysporum TaxID=5507 RepID=A0A420M7C8_FUSOX)

HSP 1 Score: 56.2 bits (134), Expect = 9.980e-8
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDKEI 177
            QL SG   +  YLHR+G  +T  C  CG++EE+V+HFL  C RWD +R  + + +D+E+
Sbjct:  356 QLRSGMARVNRYLHRIGAAETDTCD-CGQEEETVDHFLFRCPRWDEQREHMRN-VDREM 412
[Close]
BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Match: A0A8H6H1B3_FUSOX (Reverse transcriptase domain-containing protein n=1 Tax=Fusarium oxysporum f. sp. conglutinans TaxID=100902 RepID=A0A8H6H1B3_FUSOX)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-7
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNEISDLIDKEI 177
            QL +G   +  YLHR+G  +T  C  CG++EE+VEHFL  C RWD +R  + + +D+E+
Sbjct:  611 QLRTGMARVNRYLHRIGAAETDTCD-CGQEEETVEHFLFRCPRWDEQREHMRN-VDREM 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1162.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD44_HETAK2.640e-2891.23Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y0N9_HETAK3.480e-2168.97Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1B8AA98_FUSPO2.300e-844.07Uncharacterized protein n=1 Tax=Fusarium poae TaxI... [more]
W9NBX9_FUSOX2.830e-840.68Uncharacterized protein n=1 Tax=Fusarium oxysporum... [more]
A0A6J2XJB5_SITOR5.030e-840.00uncharacterized protein LOC115879077 n=1 Tax=Sitop... [more]
A0A1J8QDM2_9AGAM5.500e-842.59RNase H type-1 domain-containing protein n=1 Tax=R... [more]
B8MM56_TALSN8.180e-854.76RNase H type-1 domain-containing protein n=1 Tax=T... [more]
A0A420MUN5_FUSOX9.700e-844.07Uncharacterized protein n=1 Tax=Fusarium oxysporum... [more]
A0A420M7C8_FUSOX9.980e-844.07Uncharacterized protein n=1 Tax=Fusarium oxysporum... [more]
A0A8H6H1B3_FUSOX1.010e-744.07Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1162contigH-akashiwo_Contig1162:87436..87612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28564.XP_002485806.1
PFAMsExo_endo_phos_2,RNase_H,RVT_1
Model size177
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-08
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39XVS@33154|Opisthokonta,3P0R9@4751|Fungi,3R15B@4890|Ascomycota,20T53@147545|Eurotiomycetes
DescriptionEncoded by
Cds size177
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.8956585-CDS-H-akashiwo_Contig1162:87435..876121681387102.8956585-CDS-H-akashiwo_Contig1162:87435..87612Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 87436..87612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1162.2.1prot_H-akashiwo_Contig1162.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1162 87436..87612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1162.2.1

>prot_H-akashiwo_Contig1162.2.1 ID=prot_H-akashiwo_Contig1162.2.1|Name=mRNA_H-akashiwo_Contig1162.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
QLLSGHCNLGAYLHRLGRRDTLECAFCGKDEESVEHFLLECRRWDRERNE
ISDLIDKEI
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mRNA from alignment at H-akashiwo_Contig1162:87436..87612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1162.2.1 ID=mRNA_H-akashiwo_Contig1162.2.1|Name=mRNA_H-akashiwo_Contig1162.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:87436..87612- (Heterosigma akashiwo CCMP452)
CAGCTGCTGTCAGGGCACTGCAATTTGGGAGCTTACTTGCATAGACTCGG
GAGACGGGACACACTGGAGTGTGCCTTTTGCGGAAAGGATGAGGAGAGTG
TCGAGCACTTCCTACTAGAATGCAGGAGATGGGATAGAGAAAGGAATGAG
ATTTCAGATCTGATAGACAAAGAAATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1162:87436..87612-

>mRNA_H-akashiwo_Contig1162.2.1 ID=mRNA_H-akashiwo_Contig1162.2.1|Name=mRNA_H-akashiwo_Contig1162.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:87436..87612- (Heterosigma akashiwo CCMP452)
CAGCTGCTGTCAGGGCACTGCAATTTGGGAGCTTACTTGCATAGACTCGG
GAGACGGGACACACTGGAGTGTGCCTTTTGCGGAAAGGATGAGGAGAGTG
TCGAGCACTTCCTACTAGAATGCAGGAGATGGGATAGAGAAAGGAATGAG
ATTTCAGATCTGATAGACAAAGAAATT
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