mRNA_H-akashiwo_Contig1162.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1162.1.1
Unique NamemRNA_H-akashiwo_Contig1162.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: B7G019_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G019_PHATC)

HSP 1 Score: 139 bits (350), Expect = 2.670e-37
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = 1
Query:   13 ENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVACKLTG 510
            E+QPH+  +MR ILVDW+V VH  + L P TL+L VN++DRF  +  + R +LQLVGVTSL+IA+KY ++  P  +   Y+   AY+  DI EME  IL T+ + +++P+  +FL  YL          +LS YI + +LQ  D   +LPS +AA++V +A +  G
Sbjct:   77 ESQPHINERMRSILVDWLVEVHLKFKLVPETLYLTVNIIDRFLQIHKVSRPKLQLVGVTSLLIASKYEEIYPPELRDLVYICDRAYTRPDIIEMEECILKTLGYQITIPSAHAFLVRYLKAGHADKRIVQLSCYILDSTLQSYDLLRYLPSQLAAAAVFIARRTVG 242          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: B8BZQ6_THAPS (Cyclin putative cyclin (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZQ6_THAPS)

HSP 1 Score: 130 bits (327), Expect = 1.770e-35
Identity = 63/158 (39.87%), Postives = 103/158 (65.19%), Query Frame = 1
Query:   16 NQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVV 489
            +Q  + +KMR ILVDW+V VH  + L P TL+L VN++DR+ S   + R++LQL+GVT+L++A K+ ++  P  + C Y+T  AY   ++ +ME++IL  +D+ +SVPT   FL  +L+ +  S   +  +N+  E+SLQ  D   + PSL+ A++VV
Sbjct:    3 SQNDINAKMRAILVDWLVEVHMKFRLHPETLYLCVNIIDRYCSKVDVKRSKLQLIGVTALLVACKHEEIYPPEVRDCVYITDRAYDRQEVLDMEQSILKELDWKISVPTAYPFLHRFLSITGASEMTRHAANFYMERSLQEHDLLNYRPSLVCAAAVV 160          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A6U6K965_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6K965_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.950e-35
Identity = 67/161 (41.61%), Postives = 106/161 (65.84%), Query Frame = 1
Query:   13 ENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVA 495
            + Q  + +KMR ILVDW+V VH  + L P TL+L +N++DR+ S   + R++LQLVGVT+L+IA KY ++  P  + C Y+T  AY+  ++ +ME++IL  + F ++VPT   FL  +L  +  S  ++  +NY  E++LQ  D   F PS++AAS+VV+A
Sbjct:   27 DQQADINAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSHVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDILQRLRFKITVPTAYPFLLRFLNMTKASQLSRIAANYYMERTLQEHDLLKFKPSVVAASAVVLA 187          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A5A8DQI9_CAFRO (Cyclin N-terminal domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DQI9_CAFRO)

HSP 1 Score: 134 bits (337), Expect = 5.870e-35
Identity = 69/168 (41.07%), Postives = 104/168 (61.90%), Query Frame = 1
Query:   16 NQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVACKLTGDDT 519
            +Q  V +KMR ILVDW++ VH  + L P TL+L VN++DR+   KP++RT+LQLVGVT++++A+KY ++  P  K   ++T  AYS ++I +ME  +L  + F ++VPT   FL  Y   +      K L+ Y  E+ LQ  D   FLPSL A+++V  A +  G  T
Sbjct:  111 HQTDVNAKMRAILVDWLLEVHFKFKLLPETLYLTVNIIDRYLERKPVVRTKLQLVGVTAMLVASKYEEIYPPEVKDFVFITSNAYSHEEILDMEARMLNALRFEVTVPTAWIFLGRYCKVAMLDTRTKLLAQYYVERCLQEYDMLRFLPSLQASAAVHAAMRTLGTGT 278          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A1E7FEB9_9STRA (Cyclin_N-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEB9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.900e-35
Identity = 65/166 (39.16%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   13 ENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVACKLTG 510
            +NQ H+  +MR ILVDW+V VH  + L P TL+L +N++DR+   + + R +LQLVGVTSL+IA+KY ++  P  +   Y+   AY+  +I EME  IL T+++N+++P+  +FL  +L  +       +LS YI + +LQ  +   +LPS +AA++V +A +  G
Sbjct:   44 DNQTHINERMRSILVDWLVEVHLKFKLVPETLYLTINLIDRYLERQEVSRPRLQLVGVTSLLIASKYEEIYPPELRDLVYICDRAYTRTEIIEMEEKILKTLEYNITIPSAHAFLVRFLKAAHADKRIVQLSCYILDGTLQSYNLLHYLPSQLAAAAVFIARRTVG 209          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A812S730_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S730_9DINO)

HSP 1 Score: 134 bits (338), Expect = 6.300e-35
Identity = 72/162 (44.44%), Postives = 102/162 (62.96%), Query Frame = 1
Query:   19 QPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVACKL 504
            Q  + +KMR ILVDW+V VH  Y L P TLF+AVNV+DR+ S++ + R +LQL GVT+L+IA+K+ ++  P  K   Y+T  AY+ DDI  ME +IL T++F L  PT   FL  Y   +  S     L  Y+AE  L  V    ++PSL+AA+S +++ KL
Sbjct:  139 QREINTKMRAILVDWLVEVHMKYRLKPETLFMAVNVIDRYLSMRQVARKKLQLCGVTALLIASKFEEIYPPEVKDFVYITDNAYTKDDILRMEVSILSTLNFELCGPTAAHFLDRYQRANKCSEEHAHLMQYLAELCLLEVHMVQYVPSLVAAASALLSNKL 300          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A6U7XGX0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U7XGX0_9EUGL)

HSP 1 Score: 133 bits (334), Expect = 1.300e-34
Identity = 72/164 (43.90%), Postives = 97/164 (59.15%), Query Frame = 1
Query:   19 QPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVACKLTG 510
            Q  V  KMR ILVDW+V VH  + L P TLFLAV ++DRF   K + R +LQLVGV ++++AAKY ++  P  K   Y+    Y+ DDI  MER +  T++FNL+VPTV  FL   L         ++L+ Y+AE SL       + PSLI AS + +A K  G
Sbjct:  108 QTDVNEKMRTILVDWLVDVHLKFKLLPETLFLAVEIIDRFLDKKVVSRQKLQLVGVVAMLLAAKYEEIYPPEVKDFIYIAANTYTRDDILRMERLMFATLEFNLTVPTVYVFLQRGLQVMEADTKTRQLAQYLAELSLLDYKLLAYAPSLIGASCIYLANKYVG 271          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A6D2KXE9_9BRAS (Cyclin N-terminal domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KXE9_9BRAS)

HSP 1 Score: 132 bits (331), Expect = 1.360e-34
Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 1
Query:   13 ENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVA 495
            + QP +  KMR IL+DW+V VH  ++LSP TL+LA+N++DRF S+K +   QLQL+GVT+L+IA+KY D+  P     A LT G YS   I  ME  IL +++++L+VPT   FL  +   + + A  + + +Y+AE  L   +   F PSL+AAS+V  A
Sbjct:   62 QTQPEINEKMRSILIDWLVDVHFMFDLSPETLYLALNLIDRFLSLKTVQGGQLQLLGVTALLIASKYEDMWPPQVDDLACLTDGTYSNKQILVMEETILASLEWHLTVPTQYVFLVRFTKAAVSDAEVENMVHYLAELGLTHYETLKFPPSLLAASAVYTA 222          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A1Z5K2M1_FISSO (Cyclin B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2M1_FISSO)

HSP 1 Score: 134 bits (336), Expect = 1.460e-34
Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   13 ENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVACKLTG 510
            ENQ H+  +MR ILVDW+V VH  + L P TL+L +N++DRF   + + R +LQLVGVTSL+IA+KY ++  P  +   Y+   AY+  DI +ME  IL T+++N+++P+  +FL  +L          +LS YI + +LQ  +   +LPS +AA++V +A ++ G
Sbjct:  151 ENQTHINERMRSILVDWLVEVHLKFKLVPETLYLTINMIDRFLEKERVSRPRLQLVGVTSLLIASKYEEIFPPELRDLVYICDKAYTKQDILQMEELILKTLEYNVTIPSAHAFLVRFLKAGHADKKIVQLSCYILDGTLQSYNLLHYLPSQLAAAAVFIARRVVG 316          
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Match: A0A7R9W0K7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0K7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.210e-34
Identity = 65/161 (40.37%), Postives = 108/161 (67.08%), Query Frame = 1
Query:   13 ENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVKPILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMERNILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQIFLPSLIAASSVVVA 495
            ++Q  + +KMR ILVDW+V VH  + L P TL+L +N++DR+ S+  + R++LQLVGVT+L+IA KY ++  P  + C Y+T  AY+  ++ +ME+++L  + F ++VPT   FL  +L  + +S  A+  +NY  E++LQ  D   F PS++A S+V++A
Sbjct:  173 DHQADINAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSLVTVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDMLQRLRFKITVPTAYPFLQRFLNMAKSSQLARIAANYYTERTLQEHDLLRFKPSVVAVSAVILA 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1162.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7G019_PHATC2.670e-3742.17Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8BZQ6_THAPS1.770e-3539.87Cyclin putative cyclin (Fragment) n=1 Tax=Thalassi... [more]
A0A6U6K965_9STRA4.950e-3541.61Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A5A8DQI9_CAFRO5.870e-3541.07Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A1E7FEB9_9STRA5.900e-3539.16Cyclin_N-domain-containing protein n=1 Tax=Fragila... [more]
A0A812S730_9DINO6.300e-3544.44Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A6U7XGX0_9EUGL1.300e-3443.90Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6D2KXE9_9BRAS1.360e-3443.48Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A1Z5K2M1_FISSO1.460e-3440.36Cyclin B n=2 Tax=Fistulifera solaris TaxID=1519565... [more]
A0A7R9W0K7_9STRA2.210e-3440.37Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1162contigH-akashiwo_Contig1162:60128..60646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr46095
PFAMsCyclin_C,Cyclin_N
Model size519
Max annot lvl2836|Bacillariophyta
KEGG koko:K21777
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.38e-38
EggNOG OGsCOG5024@1|root,KOG0653@2759|Eukaryota,2XA88@2836|Bacillariophyta
Ec32 ortholog descriptionCyclin B1
Ec32 orthologEc-11_004920.1
DescriptionBelongs to the cyclin family
Cds size519
COG categoryD
BRITEko00000,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.8594244-CDS-H-akashiwo_Contig1162:60127..606461681387102.8594244-CDS-H-akashiwo_Contig1162:60127..60646Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 60128..60646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1162.1.1prot_H-akashiwo_Contig1162.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1162 60128..60646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1162.1.1

>prot_H-akashiwo_Contig1162.1.1 ID=prot_H-akashiwo_Contig1162.1.1|Name=mRNA_H-akashiwo_Contig1162.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=173bp
ANSWENQPHVTSKMREILVDWVVMVHASYNLSPATLFLAVNVLDRFASVK
PILRTQLQLVGVTSLMIAAKYYDVKSPTAKQCAYLTGGAYSVDDIFEMER
NILVTVDFNLSVPTVQSFLSLYLAKSATSAHAKKLSNYIAEQSLQFVDAQ
IFLPSLIAASSVVVACKLTGDDT
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mRNA from alignment at H-akashiwo_Contig1162:60128..60646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1162.1.1 ID=mRNA_H-akashiwo_Contig1162.1.1|Name=mRNA_H-akashiwo_Contig1162.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=519bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:60128..60646+ (Heterosigma akashiwo CCMP452)
GCCAACAGCTGGGAGAACCAACCTCATGTCACCAGCAAAATGCGCGAAAT TCTTGTTGATTGGGTTGTAATGGTCCACGCATCCTACAATCTTTCCCCTG CAACTCTATTTCTTGCGGTGAACGTTCTGGACCGTTTTGCAAGCGTTAAG CCGATTCTGCGAACGCAGCTTCAGCTCGTTGGGGTCACTTCATTGATGAT CGCTGCCAAGTACTATGATGTGAAATCACCCACTGCCAAACAGTGCGCGT ACTTGACCGGTGGTGCTTACTCTGTGGATGACATTTTCGAAATGGAGCGC AATATTTTGGTCACAGTCGATTTCAATCTTTCGGTCCCTACGGTCCAGTC TTTTCTGTCTCTTTACCTTGCGAAGAGTGCCACATCTGCACATGCCAAAA AATTATCAAATTATATTGCCGAACAAAGCCTTCAGTTTGTGGACGCACAG ATATTTCTACCATCTCTTATTGCTGCATCTTCAGTAGTAGTAGCTTGCAA ATTGACCGGTGATGACACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1162:60128..60646+

>mRNA_H-akashiwo_Contig1162.1.1 ID=mRNA_H-akashiwo_Contig1162.1.1|Name=mRNA_H-akashiwo_Contig1162.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=519bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:60128..60646+ (Heterosigma akashiwo CCMP452)
GCCAACAGCTGGGAGAACCAACCTCATGTCACCAGCAAAATGCGCGAAAT
TCTTGTTGATTGGGTTGTAATGGTCCACGCATCCTACAATCTTTCCCCTG
CAACTCTATTTCTTGCGGTGAACGTTCTGGACCGTTTTGCAAGCGTTAAG
CCGATTCTGCGAACGCAGCTTCAGCTCGTTGGGGTCACTTCATTGATGAT
CGCTGCCAAGTACTATGATGTGAAATCACCCACTGCCAAACAGTGCGCGT
ACTTGACCGGTGGTGCTTACTCTGTGGATGACATTTTCGAAATGGAGCGC
AATATTTTGGTCACAGTCGATTTCAATCTTTCGGTCCCTACGGTCCAGTC
TTTTCTGTCTCTTTACCTTGCGAAGAGTGCCACATCTGCACATGCCAAAA
AATTATCAAATTATATTGCCGAACAAAGCCTTCAGTTTGTGGACGCACAG
ATATTTCTACCATCTCTTATTGCTGCATCTTCAGTAGTAGTAGCTTGCAA
ATTGACCGGTGATGACACA
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