mRNA_H-akashiwo_Contig116.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.5.1
Unique NamemRNA_H-akashiwo_Contig116.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig116.5.1 vs. uniprot
Match: A0A7S3USS1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USS1_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 6.830e-23
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 LSEAFSEPLESLYLNPADKREVLCHSGRASEASGAPHLEGSGHGWE 138
            LSEAFSEPLESLYLNPADKREVLCHSGRASEASGAPHLEGSGHG E
Sbjct:   75 LSEAFSEPLESLYLNPADKREVLCHSGRASEASGAPHLEGSGHGAE 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3USS1_HETAK6.830e-2397.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:64682..65113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size140
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.725964-CDS-H-akashiwo_Contig116:64681..647111681387101.725964-CDS-H-akashiwo_Contig116:64681..64711Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 64682..64711 +
1681387101.7364674-CDS-H-akashiwo_Contig116:65003..651111681387101.7364674-CDS-H-akashiwo_Contig116:65003..65111Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 65004..65111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.5.1prot_H-akashiwo_Contig116.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 64682..65111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.5.1

>prot_H-akashiwo_Contig116.5.1 ID=prot_H-akashiwo_Contig116.5.1|Name=mRNA_H-akashiwo_Contig116.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=46bp
LSEAFSEPLESLYLNPADKREVLCHSGRASEASGAPHLEGSGHGWE
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mRNA from alignment at H-akashiwo_Contig116:64682..65113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.5.1 ID=mRNA_H-akashiwo_Contig116.5.1|Name=mRNA_H-akashiwo_Contig116.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig116:64682..65113+ (Heterosigma akashiwo CCMP452)
CTGAGCGAGGCCTTCTCCGAGCCACTGGAGGTGCACAGCGACCCACTGAC
CGGCTTGCCTTTATCTTTCCCCCCAACAAATAGCATGCTCAAACTACAGT
ACCTGGCAGTCTAGGGTTCAAAACATGTTTTCCGCCCCGCCCCCTGCAGC
GTTGGCGCTCTGCTCCCATTGCCCCCTTGTGCCCCCTTGACCGGAGCACC
CCCCTTGCCCACTTGGAGGGTGGCCCAACACCTTCTTTAGGGGAGAATGC
AACAAAGCGCACCCTCCCCTCCCCTCCCCCCCACCCCCACCACTCCGACC
CCCACCCCCACTCCGGCGGCAGTCGCTGTACCTGAACCCGGCGGACAAGC
GCGAGGTGCTGTGCCACTCGGGAAGGGCCAGCGAGGCCAGCGGCGCGCCC
CACCTCGAGGGCTCGGGCCACGGGTGGGAGGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:64682..65113+

>mRNA_H-akashiwo_Contig116.5.1 ID=mRNA_H-akashiwo_Contig116.5.1|Name=mRNA_H-akashiwo_Contig116.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=138bp|location=Sequence derived from alignment at H-akashiwo_Contig116:64682..65113+ (Heterosigma akashiwo CCMP452)
CTGAGCGAGGCCTTCTCCGAGCCACTGGAGTCGCTGTACCTGAACCCGGC
GGACAAGCGCGAGGTGCTGTGCCACTCGGGAAGGGCCAGCGAGGCCAGCG
GCGCGCCCCACCTCGAGGGCTCGGGCCACGGGTGGGAG
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