mRNA_H-akashiwo_Contig116.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.3.1
Unique NamemRNA_H-akashiwo_Contig116.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A7S3XKW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKW1_HETAK)

HSP 1 Score: 125 bits (315), Expect = 1.620e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:    1 MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRDAYSPLRGPLGRR 180
            MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRDAYSPLRGPLGRR
Sbjct:   42 MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRDAYSPLRGPLGRR 101          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A7R9U759_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U759_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-8
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    7 KVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRD 144
            K+  ALQ  HQ G +HRD+KPEN +Y  P + SE+++TDFGLA+ D
Sbjct:  123 KLISALQLCHQQGILHRDMKPENCIYALPDDDSEIKITDFGLALVD 168          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A7S3LIJ4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIJ4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.610e-8
Identity = 22/45 (48.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLA 135
            M ++   ++++H+AG IHRD+KPEN+++ET Y+ S +++TDFGLA
Sbjct:  212 MRRMMKGVRSLHRAGIIHRDLKPENLVFETQYDDSRVKITDFGLA 256          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A7Y5MN77_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A7Y5MN77_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 3.030e-8
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    7 KVAGALQAIHQAGFIHRDIKPENILYETPYEGSE---LRLTDFGLAMRDAYSPLRGPLG 174
            KVAGALQA H AG IHRD+KP NIL E   E  E   ++LTDFG+   ++   L+G  G
Sbjct:  223 KVAGALQAAHDAGVIHRDLKPSNILVEGGLEDPETISIQLTDFGIGQVESQQILQGVTG 281          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A3M1HJI2_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1HJI2_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-7
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   10 VAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRD 144
            +A A++  H+ G +HRD+KP NILY    EG E+++ DFGLA++D
Sbjct:  556 IAHAMETAHKKGILHRDLKPANILYRETEEGFEIKIIDFGLALKD 600          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: X6N352_RETFI (Calcium/calmodulin-dependent protein kinase type II alpha chain (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N352_RETFI)

HSP 1 Score: 53.9 bits (128), Expect = 6.770e-7
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    7 KVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMR 141
            ++  AL  +H  G IHRD+KPEN+++ET    ++L+L DFGLAMR
Sbjct:  302 QLMSALSYMHDKGIIHRDLKPENLMFETKDLNAQLKLVDFGLAMR 346          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: UPI001930CEEE (serine/threonine protein kinase n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001930CEEE)

HSP 1 Score: 52.0 bits (123), Expect = 2.870e-6
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    7 KVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRDAYSPLRGP 168
            +V GAL AIHQ GF+HRD+KP NIL +   E     +TDFGLA     S L  P
Sbjct:  118 EVGGALDAIHQMGFVHRDVKPANILLD---EQGACYITDFGLAKDSQGSVLTRP 168          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A1R2CCS1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CCS1_9CILI)

HSP 1 Score: 51.6 bits (122), Expect = 4.470e-6
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMR-DAYSPLRGPLG 174
            +H++  A+  +H +G IHRD+KPENIL E   +   ++L DFG A+R D    ++G +G
Sbjct:  145 LHQLFSAVAYLHDSGIIHRDLKPENILLEEKGDIMNIKLIDFGTAVRVDKNKTIKGAIG 203          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A6V1R4A6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R4A6_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 4.490e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMR 141
            + K+   +   H  G  HRD+K ENIL++TP EG E++L DFG++ R
Sbjct:  147 VRKLCNVIAYCHSRGVCHRDLKTENILFDTPDEGGEIKLIDFGMSRR 193          
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Match: A0A3N5K9G1_9ACTN (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5K9G1_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 6.170e-6
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    7 KVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLA 135
            KVAGAL A H+AG +HRDIKPENIL     +  E +L DFG+A
Sbjct:   74 KVAGALDAAHEAGVLHRDIKPENILVS---QYGEAKLGDFGIA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7S3XKW1_HETAK1.620e-34100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U759_9STRA1.170e-854.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3LIJ4_9STRA1.610e-848.89Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7Y5MN77_9BACT3.030e-852.54Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3M1HJI2_9BACT1.970e-748.89Non-specific serine/threonine protein kinase (Frag... [more]
X6N352_RETFI6.770e-751.11Calcium/calmodulin-dependent protein kinase type I... [more]
UPI001930CEEE2.870e-651.85serine/threonine protein kinase n=1 Tax=Solirubrob... [more]
A0A1R2CCS1_9CILI4.470e-640.68Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A6V1R4A6_HETAK4.490e-644.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3N5K9G1_9ACTN6.170e-660.47Non-specific serine/threonine protein kinase (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:32737..33348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7918.ENSLOCP00000017979
Preferred namePNCK
PFAMsPkinase
Model size182
Max annot lvl33208|Metazoa
KEGG koko:K08795
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Exons2
Evalue1.32e-09
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,38DCI@33154|Opisthokonta,3BJDB@33208|Metazoa,3D3U1@33213|Bilateria,487QH@7711|Chordata,491YD@7742|Vertebrata,4A53S@7898|Actinopterygii
EC2.7.11.17
DescriptionPregnancy up-regulated non-ubiquitously expressed CaM kinase
Cds size180
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.9617536-CDS-H-akashiwo_Contig116:32736..328081681387101.9617536-CDS-H-akashiwo_Contig116:32736..32808Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 32737..32808 +
1681387101.9731205-CDS-H-akashiwo_Contig116:33240..333481681387101.9731205-CDS-H-akashiwo_Contig116:33240..33348Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 33241..33348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.3.1prot_H-akashiwo_Contig116.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 32737..33348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.3.1

>prot_H-akashiwo_Contig116.3.1 ID=prot_H-akashiwo_Contig116.3.1|Name=mRNA_H-akashiwo_Contig116.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
MHKVAGALQAIHQAGFIHRDIKPENILYETPYEGSELRLTDFGLAMRDAY
SPLRGPLGRR
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mRNA from alignment at H-akashiwo_Contig116:32737..33348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.3.1 ID=mRNA_H-akashiwo_Contig116.3.1|Name=mRNA_H-akashiwo_Contig116.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=612bp|location=Sequence derived from alignment at H-akashiwo_Contig116:32737..33348+ (Heterosigma akashiwo CCMP452)
ATGCACAAGGTGGCTgGGGCGCTGCAGGCCATCCACCAGGCCGGGTTCAT CCACCGGGACATCAAGCCGGAGGTGGGCCGCCGCCGCCGCCGCCGCCGCC GCCGCCGCCCGCCGCCGCCGCCGCGGACCTGGTCGGCGGACGCCCGGGAT CTGGAGTGCGCGGGAGCCAGGGGTTGAGGGGCAGGGCGGGAGGGAAAGTG GAAGAGCGGCGTGGGCGCCGTTTCCCCGATGGGCATACTATACTATACAT GCAGTTAATGGCAAAGGGAGGGAGAGGGGAGGGTTATAATGTTGCAATTC ACCCCCACAAAAAATACATGCATCATGTGGAAGAAACTCCGCAACTAAGG TTCCTTTAATATATCTTGTAATGTGCTCCTCGCCGCCACACCGCGACCCC ACCCCAACTCTTTCTGCACCAAAACGGCCGCCAACGGGCGGGGGGGATCG GGCGGCGGCGGCGGGCGGCGGGCGGCGGCGGCGGCGGGCGGCGGCGGCGG CCAGAACATCCTGTACGAGACGCCGTACGAGGGGTCGGAGCTGCGGCTGA CGGACTTCGGGCTGGCCATGCGCGACGCGTACTCGCCGCTGCGCGGGCCC CTGGGCCGGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:32737..33348+

>mRNA_H-akashiwo_Contig116.3.1 ID=mRNA_H-akashiwo_Contig116.3.1|Name=mRNA_H-akashiwo_Contig116.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig116:32737..33348+ (Heterosigma akashiwo CCMP452)
ATGCACAAGGTGGCTgGGGCGCTGCAGGCCATCCACCAGGCCGGGTTCAT
CCACCGGGACATCAAGCCGGAGAACATCCTGTACGAGACGCCGTACGAGG
GGTCGGAGCTGCGGCTGACGGACTTCGGGCTGGCCATGCGCGACGCGTAC
TCGCCGCTGCGCGGGCCCCTGGGCCGGCGG
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