mRNA_H-akashiwo_Contig116.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.27.1
Unique NamemRNA_H-akashiwo_Contig116.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:1604697..1605650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size249
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.866995-CDS-H-akashiwo_Contig116:1604697..16048741681387101.866995-CDS-H-akashiwo_Contig116:1604697..1604874Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1604698..1604874 -
1681387101.877711-CDS-H-akashiwo_Contig116:1605581..16056501681387101.877711-CDS-H-akashiwo_Contig116:1605581..1605650Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1605582..1605650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.27.1prot_H-akashiwo_Contig116.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 1604698..1605650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.27.1

>prot_H-akashiwo_Contig116.27.1 ID=prot_H-akashiwo_Contig116.27.1|Name=mRNA_H-akashiwo_Contig116.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=82bp
DIKSVLLINQGEVTKLSGSAEIKVAVRGKGTFIGAYDFLTDKTQYSSGYS
AHTEVEFYEIPIQEFALVKSNRAGVAKYLEEK
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mRNA from alignment at H-akashiwo_Contig116:1604697..1605650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.27.1 ID=mRNA_H-akashiwo_Contig116.27.1|Name=mRNA_H-akashiwo_Contig116.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=954bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1604697..1605650- (Heterosigma akashiwo CCMP452)
GACATTAAATCAGTTTTACTGATAAACCAAGGTGAAGTAACAAAGCTATC
AGGCTCTGCTGAAATCAAGGTAAGAAGTTCCTCTTCTTTATCTAAACTTT
CCGTGTCATTTGTCATATAAAACACACTTATAGTTATATTCTTCGCTCAA
AAAGGCAAGGGGTTCGCCAGCAAAATATAATCGTTTGTCTTGCGTTGTTG
CTGAAGAAATGTGGTGGTTGAGACAGCAGGCCACTCAACACACTACACGA
CGTCCTCAATATTTTTTCTCCGAAATGAAATGATCTGTTTGAAGTGGGGC
CATGGCCAGCTTATGGCATCCAAGATTTTGCTTTAGCATATATATATATA
TGTAGTGGGGATAAATATTAGCTTCATCATGATATATATTAGTATGGTGG
GGATGGATTGGTCGCTTTGTTTCATTTTATTTACTGTACATTATTATTGC
CTTGGGGTGTACATGGTGTGGAAGTATGATGATGTTGATTTTAGTTTCAA
GTCTAGCGTTTCAATCCACTTTCAGGGCAGAACCCCTAGCTTCTATGAGG
AGACCCTTCCACCCCAATCTACCATTTCCAAATCCCCCTATACTTGATCA
TCAAAAAACACAAGAACAAATACTCGCATACCACCTAAACTATCCATGTA
TCAATTGCCCTCTGCTGTACCCCCCGGTATGTGCTTCCCCATTCACTCCC
CCTTCTTCAGCCCCAGCTTGCCCATCTCTGATTAATATGTGCGTGTGTGT
GTTTGTGTGTTTATTGTGTTTTCCAGGTCGCGGTACGTGGAAAGGGCACT
TTCATTGGAGCTTATGACTTTCTGACAGACAAAACACAATACAGCTCAGG
GTATTCAGCACATACCGAAGTTGAGTTCTATGAAATCCCCATTCAAGAAT
TTGCCCTGGTTAAGTCAAATAGAGCTGGGGTGGCAAAATATTTAGAAGAA
AAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:1604697..1605650-

>mRNA_H-akashiwo_Contig116.27.1 ID=mRNA_H-akashiwo_Contig116.27.1|Name=mRNA_H-akashiwo_Contig116.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=246bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1604697..1605650- (Heterosigma akashiwo CCMP452)
GACATTAAATCAGTTTTACTGATAAACCAAGGTGAAGTAACAAAGCTATC
AGGCTCTGCTGAAATCAAGGTCGCGGTACGTGGAAAGGGCACTTTCATTG
GAGCTTATGACTTTCTGACAGACAAAACACAATACAGCTCAGGGTATTCA
GCACATACCGAAGTTGAGTTCTATGAAATCCCCATTCAAGAATTTGCCCT
GGTTAAGTCAAATAGAGCTGGGGTGGCAAAATATTTAGAAGAAAAG
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