mRNA_H-akashiwo_Contig116.26.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.26.1
Unique NamemRNA_H-akashiwo_Contig116.26.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:1576048..1579434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size193
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.8098216-CDS-H-akashiwo_Contig116:1576047..15760701681387101.8098216-CDS-H-akashiwo_Contig116:1576047..1576070Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1576048..1576070 -
1681387101.8292735-CDS-H-akashiwo_Contig116:1579265..15794161681387101.8292735-CDS-H-akashiwo_Contig116:1579265..1579416Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1579266..1579416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.839906-UTR-H-akashiwo_Contig116:1579416..15794341681387101.839906-UTR-H-akashiwo_Contig116:1579416..1579434Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig116 1579417..1579434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.26.1prot_H-akashiwo_Contig116.26.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 1576048..1579416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.26.1

>prot_H-akashiwo_Contig116.26.1 ID=prot_H-akashiwo_Contig116.26.1|Name=mRNA_H-akashiwo_Contig116.26.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MICIKAPPKLKEQPPDHRGINQIGNTNGGTSRPMLSRGMTPSFTSSSLGS
ALGLHKSP
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mRNA from alignment at H-akashiwo_Contig116:1576048..1579434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.26.1 ID=mRNA_H-akashiwo_Contig116.26.1|Name=mRNA_H-akashiwo_Contig116.26.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3387bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1576048..1579434- (Heterosigma akashiwo CCMP452)
GGGGACAACACAAGTGACATGATCTGCATCAAGGCTCCGCCCAAGCTCAA
AGAGCAACCGCCTGACCATCGGGGCATAAACCAGATTGGCAACACAAATG
GCGGGACATCTCGTCCGATGTTGTCCAGGGGCATGACTCCAAGCTTCACT
TCTTCATCTTTGGGGTCAGGTTGGTATTTTACTGTTGAGTATAAATCCAG
TGCTACCATACCAATATACACCAATAATAGTTTATATTTCTTAAAATGTC
AAAAATCTTGTCCCAAGTGCAGAACAGCGGGTTCCCACAGAAAGAAGCTG
TGTTGGGCACTCTGGTTGACAAAAAGTGTACAGTGGTACGCGTATATTCT
CTTGTTGCAAGAAAATGAGGGAGATACTGATGATGAATGAAGATCGAGAA
GCTGAAAGTGACTCCTCTCGTGGATTAGGAAGAAGCTGAAAGTGGCTCCT
CTAGTAGTGGAAGAGTATTGTTGACCAATAACGAGATTGTGAAGAATAAA
AGTGGCCAATCATGTTGGTGTTGTTAGCAAGAGGATACATAGGCCAAAAG
ATGGTGAGAGCGTACTTATACAAGCAAAATGCAGCAAACGTATAAGTAGG
TATTATGCATTTGTGAGATAGTGTTATTAAAAATATAATTCATCCGCCAG
ATTTAAGTTAATCACCCGCCAGGCACTTTGGCGGATAACTCCGAACCACT
ACATTTGGTATCTCCAGTTGTCCTCTGTTTGTATCTTTTGCTACGGAGAG
TCAAGCCGTTCATTCGCTTTTCCACAAACCTCTAGCTGCTGCCAGCCTCT
TCTTGCAAACAACATGAATAGAGCACTTGTTACACCGGACAAAATTCAAC
TCATCAAGGACATAGATGGTTCCTTGGGTTGATATGTCCGATACTACGTT
GTTCCTCATGTATTGGAGCTGGAATAAAATTAAAATAGGTTTAGCATGTA
GGGTTAAGGGCAGCTGGAAACTTCGATTTAGTAGTCATTAATAGCCAGAC
TTAATCCGACGAAGTGCTCAGATGTCAAGGCAGTGGTTGTGTGGCTCAGG
ATGTGAAGGGGCGCACTGCAAAAGTAGAACGTAGAAAAGAAAGGGAAAAA
ATGAACCTTAAATGCTCTGAATATCCACCCGCAGTATTTGGCTCACATGA
ACTGATTTAGGTCGAAATAAAGAATTTGCCGAGGGTATAGATGGGTTTCT
GGATTCAAATATCCTGCACTAGATGTTGATAGTCATGTGTATTGGACCTA
AATTAAAATGAAAATGGTTGAATTGAGTCCCAAATGCTCTCAATATCTAC
TGCTCAGTATTTTGGCTCATATGAACTCATTATTATGGGTATGGATGTGT
TCCTCGTGTAAAATAAAAACGACACTACACAGTGATCCTCAAGTATATTG
CTGTTGGAATATATTGAAAACGATCTGGATTGAACCCCAGCTGCCCCCTG
TCTGTACTGGCAGAAATCTGTAATACATAGTCATAGTGGCGGATGAAACC
TGCAAATTCGGAGGATAATATCTAAAAAGTGTTGAAAAAAGTGTGGTGGA
GAGCCAACTGGCGGCTGAACGCTTCAACTCTGGAAAATATAGCCAACTGG
AGGTTGAATTCTACAATTCTGGCGGATTAAATATTTGTTTATTAATGATA
ATACAATATGATGATGATGATGATGATGTTAATTTTAGTTTTCGGTCTAA
CCTTTCAAACCGCTTTCGGGGCAGAACCCCTAGCTTCTATAAGCAATAAG
CAGACCCTTCCACCTCAATCTACCATTTCTCAATGCCACAACTAATATAA
CCATAATATTTATTTGATATTCAAGGAAAAGTCCAGCCATTTTTGCATAC
TTTTTACCATAAAAGAGTGTAATAGAACACATGTGATGAAGGCAAGGCAG
GAGCTTCAGATTTATGCTCAATGTCCCAATTATTCGGCTTGTCCATCATA
TACATATTGAGTAATAGCATTCAATGAAGCCATCCACCCTTGCCAGTTGC
CAACTACGAAGGGTCACAGCGCCCGATTGATGGGTTTTTGTGCTACGCCT
GGTTGAATTTGCATGATTTCCGATCGTCGCGCTGCCTCAATTGATTCCAA
GTGTTGTTTTGCATCGAGCCCAGCCTTCTCCTTGTGTTGCCTCAATAGTT
TAACAAGAGGAAGTTTCTAGGGGATTTCGTCAAAGTAAATATATTCTTGG
GTTTTGGGGGGAATTTTGAAAAATCCCGAATTCCTGGTCATTTTGTCGAG
AAAAAATGGCTTATATTTCACAGTCTTCGTTGAAGTTATTCTAAATAGTT
TTTCATATATTCATTCATGTCAGCTAATCGTTGCCTGTGGAGAGATATTT
TCTCTAAAGATTTATGGATTATACTTAGGAAAGCTCAAAGGTCTTAAATT
TTAGCTTCTTGGGTTTGTCTCTCGATTCAAGCTGAAAATTGCATTTTTGG
CGGCGAAGGGTGGTTTCTTTGAAGTAAGAGCGGGTTACTCGGACCAAAGA
GAACACCCTTTGCCGCCAGTAATGCAATTTGCAGTTTAAATCGAGAGACA
AACCAAGAAGCTATAATTTAAGACTTTTAGTTTTCCCATGTAAACATTAA
TCATATTTTAAATCTTTTAGAAAAACCTATCTCTACACCAGGCAACGCTT
TGCTGGCATCGATGAACAGACGAAAAAAATATTTTGAAAAACTACAACGA
ATAGTGGAACGGAACGCTTTGTCGGAAAATAGTTGCCGAAAAGGAATACC
GGCTGGTACACGCTCTACCTACCTTGCATTGTCATTTCCGGCGGTAAACG
AAAAATGAGATCGTGCTAAAAAATAGAGGCTTGTCGCTCGAGCGACCCCA
TGTACCATACATAGAGAAATAACTATAGAGATAACTACGCGTTCGTAGAA
AACACAAACAAAGCGAGGTAGTGTAAAATATGAACCACTTCTGACAAATT
AACTGGGAAATGGGGTGTTATCAAAATTCCCACAAAATCCCAAGAATAGT
TTACTTTGACGAAAACCCCTAAAAACTTCGTATCTATCTATCTATCTATC
TATCTATCTATATATATATGTGTGTGTGTGTGTGTGTGTGCTAATATAAT
ATTATAAGATAAGTTTTGTTGACAGAATAGTACATCATGTGGTTAAGAAG
GGTCTATGTACATATGCTGCTACTTTACCCAGTGAGGTAACAAATTTATC
TGTATACAGCAGGCATGCAGGTTTAGAAATATTTTTTGTGGTTTGTTTCA
TTTAAGTTATGTCCTACAACACTTTGGAGCCCAAAAGTTTGCTCCTTTCA
CGCCTCGAGCTACAACTATGTACCTGAATGTATGTCCTGCATAATGCTGC
TCATTAAAATACAGCCCTGGGGCTGCACAAGTCGCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:1576048..1579434-

>mRNA_H-akashiwo_Contig116.26.1 ID=mRNA_H-akashiwo_Contig116.26.1|Name=mRNA_H-akashiwo_Contig116.26.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1576048..1579434- (Heterosigma akashiwo CCMP452)
ATGATCTGCATCAAGGCTCCGCCCAAGCTCAAAGAGCAACCGCCTGACCA
TCGGGGCATAAACCAGATTGGCAACACAAATGGCGGGACATCTCGTCCGA
TGTTGTCCAGGGGCATGACTCCAAGCTTCACTTCTTCATCTTTGGGGTCA
GCCCTGGGGCTGCACAAGTCGCCC
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