mRNA_H-akashiwo_Contig116.20.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.20.1
Unique NamemRNA_H-akashiwo_Contig116.20.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A6U1NEZ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NEZ7_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.110e-35
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCV-TKVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            MS FG      +GP ALD+AK EMEMYT+LFN MA+ CF KC  +K+KE +LN+GEMSC DRC GKY+EAHQKVGEVLKRVE +M AQQ
Sbjct:    1 MSLFGGGAPAASGPSALDVAKAEMEMYTDLFNNMATICFKKCAASKIKEAELNVGEMSCVDRCTGKYIEAHQKVGEVLKRVEEQMKAQQ 89          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A7S1BN48_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN48_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.100e-28
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVTKV-KEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            M+FF  KEE  AGPD ++ AK E+EMYT+LFNKM+++CF KC +K  KEPDL +GEMSC DRCVGKY+EA +++G V ++   E  A Q
Sbjct:    1 MNFFSGKEEKPAGPDPVEAAKAEIEMYTDLFNKMSASCFSKCSSKKHKEPDLALGEMSCVDRCVGKYMEAQERIGVVFQKFNEEQAAAQ 89          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A7S0Y8N1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y8N1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.170e-28
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVT-KVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQ 261
            M+FFG +E    GPD +  AKTEMEMYT+LFNK+ASTCF KCV  K KEPDL++GEM+CTDRCV KYLE  Q VG VL++     + Q
Sbjct:    1 MNFFGGEEAQPQGPDPVFAAKTEMEMYTDLFNKIASTCFSKCVNRKHKEPDLSLGEMTCTDRCVSKYLEGQQIVGVVLQKANEAQVQQ 88          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A6H5KCB3_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCB3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.390e-28
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 MSFFGKKE-EPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVTKVK-EPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            MS+FG  E EP +GP  +D+AK E++MY++LF KM+  CF KCV K+  E DLN+GEMSC DRCV KY+EA +KVG +LKR E  + AQQ
Sbjct:    1 MSWFGNSEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCVVKMHGESDLNVGEMSCVDRCVSKYMEAQEKVGVILKRAEESLAAQQ 90          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A6T5YYM4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5YYM4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.940e-28
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCV-TKVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            MSFFG  +    GPD +  A+TEMEMYT+LFNK+A +CF KC  T+ +EPD+++GEMSCTDRCV KYLE+ ++VG++L++      AQQ
Sbjct:    1 MSFFGGGQAQPQGPDPMFAAQTEMEMYTDLFNKIARSCFQKCASTRHREPDISLGEMSCTDRCVAKYLESQERVGKILQKANESQAAQQ 89          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A448YV82_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV82_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.440e-27
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 MSFFGKKEEPV-AGPDALDMAKTEMEMYTNLFNKMASTCFHKCVT-KVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQ 261
            M+FFG  EE   AGPD +  AKTEMEMYT+LFNK+ASTCF KC + K KEPDL++GEM+C DRCV KYLE  +++G VL++   E   Q
Sbjct:    1 MNFFGGGEEAKPAGPDPVFAAKTEMEMYTDLFNKIASTCFSKCASRKHKEPDLSLGEMTCADRCVSKYLEGQERIGVVLQKANEEQAQQ 89          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A835Z1H3_9STRA (Tim10/DDP family zinc finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.390e-27
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVTKVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMM 255
            MS+F K+ E   GPD ++MAKTE+EM T+L+NKM  +CF KC+  +KE DL++GEMSC DRCV KYL A + VG   K +E+ MM
Sbjct:    1 MSWFSKEPEQQQGPDKVEMAKTEVEMMTDLYNKMVDSCFSKCIANMKEGDLSVGEMSCVDRCVHKYLSAQEVVGSKTKEMEASMM 85          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A7S2HYG5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYG5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.460e-26
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    4 SFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVTKV-KEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            + FG +E+  AGP+ L  A TEMEMYT+LFNKMAS+CF KC +K  K+ DL +GEMSCTDRCV KYLEA +K+G ++++      AQQ
Sbjct:   48 ALFGTEEKQPAGPEPLFAATTEMEMYTDLFNKMASSCFQKCASKKHKDSDLALGEMSCTDRCVAKYLEAQEKIGVIIQKANEAQAAQQ 135          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A1E7FWV3_9STRA (Mitochondrial import inner membrane translocase subunit tim10 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWV3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.310e-26
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    7 FFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVT-KVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            F G +E+   GPD +  AKTEMEMYT+LFNK+AS CF KC + K KEPDL++GEM+CTDRCV KYLE  Q +G VL++   +   QQ
Sbjct:    5 FGGGEEQKPQGPDPVFAAKTEMEMYTDLFNKIASECFQKCASRKHKEPDLSLGEMTCTDRCVSKYLEGQQLIGVVLQKANEQQAQQQ 91          
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Match: A0A7S3L967_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L967_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.410e-26
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVT-KVKEPDLNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ 264
            M+FFG  ++   GPD +  A+TEMEMYT+LFNK++++CF KC + K KE ++++GEMSCTDRCV KYLE+ Q+VG VL++     + QQ
Sbjct:    1 MNFFGGGQQAQQGPDPVFAARTEMEMYTDLFNKISASCFQKCASRKHKEGEISLGEMSCTDRCVAKYLESQQRVGAVLQKANEAQLQQQ 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U1NEZ7_9STRA3.110e-3567.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1BN48_9STRA1.100e-2857.30Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0Y8N1_9STRA1.170e-2861.36Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A6H5KCB3_9PHAE1.390e-2857.78zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A6T5YYM4_9STRA6.940e-2855.06Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A448YV82_9STRA1.440e-2759.55zf-Tim10_DDP domain-containing protein n=1 Tax=Pse... [more]
A0A835Z1H3_9STRA4.390e-2755.29Tim10/DDP family zinc finger-domain-containing pro... [more]
A0A7S2HYG5_9STRA1.460e-2656.82Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7FWV3_9STRA2.310e-2657.47Mitochondrial import inner membrane translocase su... [more]
A0A7S3L967_9STRA6.410e-2652.81Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:1126906..1127422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr8363
PFAMszf-Tim10_DDP
Model size264
Max annot lvl2836|Bacillariophyta
KEGG koko:K17778
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.89e-30
EggNOG OGsKOG3480@1|root,KOG3480@2759|Eukaryota,2XDJH@2836|Bacillariophyta
DescriptionTim10/DDP family zinc finger
Cds size264
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.471048-CDS-H-akashiwo_Contig116:1126905..11270031681387102.471048-CDS-H-akashiwo_Contig116:1126905..1127003Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1126906..1127003 +
1681387102.4803035-CDS-H-akashiwo_Contig116:1127115..11272331681387102.4803035-CDS-H-akashiwo_Contig116:1127115..1127233Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1127116..1127233 +
1681387102.4879308-CDS-H-akashiwo_Contig116:1127374..11274221681387102.4879308-CDS-H-akashiwo_Contig116:1127374..1127422Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1127375..1127422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.20.1prot_H-akashiwo_Contig116.20.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 1126906..1127422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.20.1

>prot_H-akashiwo_Contig116.20.1 ID=prot_H-akashiwo_Contig116.20.1|Name=mRNA_H-akashiwo_Contig116.20.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=88bp
MSFFGKKEEPVAGPDALDMAKTEMEMYTNLFNKMASTCFHKCVTKVKEPD
LNIGEMSCTDRCVGKYLEAHQKVGEVLKRVESEMMAQQ
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mRNA from alignment at H-akashiwo_Contig116:1126906..1127422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.20.1 ID=mRNA_H-akashiwo_Contig116.20.1|Name=mRNA_H-akashiwo_Contig116.20.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=517bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1126906..1127422+ (Heterosigma akashiwo CCMP452)
ATGAGCTTCTTTGGAAAAAAGGAAGAGCCTGTTGCAGGGCCTGATGCCCT TGACATGGCAAAAACAGAGATGGAAATGTACACTAATCTTTTCAACAAGT AGGCACATTTTCGCAAAACAACGATGGAATTCAGTAATGTTCCCAAGACT GGGTGCTCTATGATGAACCTGCAGTGTGTTAAGTACATTGTTTCCTGAAT CTTGTGCCAGGATGGCATCGACCTGTTTTCACAAGTGCGTGACAAAAGTC AAGGAGCCCGATCTCAATATCGGCGAAATGAGCTGCACAGATCGATGTGT TGGAAAATATCTTGAGGCACACCAAAAGGTCTGACTGTCGCGTGTCAAAT AACTCTTTATTCTGTCTGCTGTCAATTTCTGTGAAGGTGTTCATTTATCA TGATGTTCAGTGCAAGTATTCAACCTTTCAAAATCTGCTGGTCCTTCTCT CTCCATTTTTAATCAAAAGGTTGGCGAAGTTTTGAAAAGGGTTGAAAGTG AAATGATGGCCCAACAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:1126906..1127422+

>mRNA_H-akashiwo_Contig116.20.1 ID=mRNA_H-akashiwo_Contig116.20.1|Name=mRNA_H-akashiwo_Contig116.20.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=264bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1126906..1127422+ (Heterosigma akashiwo CCMP452)
ATGAGCTTCTTTGGAAAAAAGGAAGAGCCTGTTGCAGGGCCTGATGCCCT
TGACATGGCAAAAACAGAGATGGAAATGTACACTAATCTTTTCAACAAGA
TGGCATCGACCTGTTTTCACAAGTGCGTGACAAAAGTCAAGGAGCCCGAT
CTCAATATCGGCGAAATGAGCTGCACAGATCGATGTGTTGGAAAATATCT
TGAGGCACACCAAAAGGTTGGCGAAGTTTTGAAAAGGGTTGAAAGTGAAA
TGATGGCCCAACAA
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