mRNA_H-akashiwo_Contig116.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.19.1
Unique NamemRNA_H-akashiwo_Contig116.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 266 bits (679), Expect = 9.490e-87
Identity = 123/160 (76.88%), Postives = 143/160 (89.38%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKK 480
            LPT REMFDQL G++YFSS+DMLWAYWS+PLR+ D+HKTAFT+RNKKY + VMCFGLTNAPATFSHLVNKVFQG  +DFALCFLDDVL ++G +FS HL  LE+IF RMI ANLKFKLPKCLFGA+QVP+LGHI TREG+KPDPKKIEA+K ++RP +KK
Sbjct:   29 LPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKK 188
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BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 252 bits (644), Expect = 2.990e-79
Identity = 116/160 (72.50%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKK 480
            LPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKK
Sbjct:  167 LPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKK 326
[Close]
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 252 bits (644), Expect = 2.120e-77
Identity = 116/160 (72.50%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKK 480
            LPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKK
Sbjct:  167 LPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKK 326
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BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A4Y2NDG8_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NDG8_ARAVE)

HSP 1 Score: 140 bits (352), Expect = 1.680e-37
Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP 468
            LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP
Sbjct:   83 LPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRP 237
[Close]
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A4Y2MXS1_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2MXS1_ARAVE)

HSP 1 Score: 139 bits (349), Expect = 1.020e-36
Identity = 70/156 (44.87%), Postives = 99/156 (63.46%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP 468
            LP T +  D L GS +F+++D+   YW + +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K DP+KI+AV    RP
Sbjct:   83 LPRTDDTLDALNGSQWFTTLDLKRGYWQVEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEAWLVYLDDIIV-VGRTFEEHLNNLRKVFQRLQKANLKLNPKKCRFYQKEVAYLGHVISEEGVKTDPEKIKAVVDRPRP 237
[Close]
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A4Y2J202_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J202_ARAVE)

HSP 1 Score: 135 bits (339), Expect = 4.740e-36
Identity = 68/156 (43.59%), Postives = 97/156 (62.18%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP 468
            LP   +  D L GS +F+++D+   YW + +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  A LK    KC F   +V +LGH+I+ EG+K DP+KI+AV    RP
Sbjct:   83 LPRIDDTLDSLNGSQWFTTLDLKSGYWQVEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRLQKAKLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRP 237
[Close]
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A098VNV3_9MICR (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VNV3_9MICR)

HSP 1 Score: 131 bits (330), Expect = 4.780e-36
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPAS 474
            +P   E  D+L G  +F+++D+   YW I + + D  KTAF + N  Y ++ M FGL NAPATF  L+N V +      AL +LDDV+  S   F +HL ++ +IF  + AANLK KL KC F    V +LGH+I+ +GIKPDP KI+ +   + P S
Sbjct:    1 MPRIDETLDKLYGKKFFTTLDLASGYWQIQVHDPDIEKTAFVVENNLYEFERMAFGLCNAPATFQRLMNYVLRDVLGSKALVYLDDVIIFSDT-FESHLNDIREIFNLLKAANLKLKLNKCQFAKRSVNYLGHVISTDGIKPDPSKIDKIVNYKTPTS 157
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BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A4Y2QUF0_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QUF0_ARAVE)

HSP 1 Score: 136 bits (343), Expect = 5.240e-36
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP 468
            LP   +  D L GS +F ++D+   YW + +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K DP+KI+AV    RP
Sbjct:   82 LPRIDDTLDSLNGSQWFMTLDLKSGYWQVEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRLQKANLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRP 236
[Close]
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A4Y2AYY6_ARAVE (RNA-directed DNA polymerase (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2AYY6_ARAVE)

HSP 1 Score: 141 bits (356), Expect = 6.990e-36
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP 468
            LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC+F   +V +LGH+I+ EG+K DP+KI+AV    RP
Sbjct:  268 LPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCMFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRP 422
[Close]
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Match: A0A4Y2LUR4_ARAVE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LUR4_ARAVE)

HSP 1 Score: 140 bits (352), Expect = 1.260e-35
Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 1 
Query:    1 LPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP 468
            LP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP
Sbjct:   37 LPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRP 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XU57_HETAK9.490e-8776.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XVA0_HETAK2.990e-7972.50Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK2.120e-7772.50Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A4Y2NDG8_ARAVE1.680e-3745.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2MXS1_ARAVE1.020e-3644.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2J202_ARAVE4.740e-3643.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A098VNV3_9MICR4.780e-3642.41Reverse transcriptase domain-containing protein (F... [more]
A0A4Y2QUF0_ARAVE5.240e-3644.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2AYY6_ARAVE6.990e-3645.51RNA-directed DNA polymerase (Fragment) n=1 Tax=Ara... [more]
A0A4Y2LUR4_ARAVE1.260e-3545.51RNA-directed DNA polymerase (Fragment) n=2 Tax=Ara... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:721393..721893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog27289.XP_003670625.1
PFAMsPeptidase_A2E,RVT_1,rve
Model size501
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003964,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Exons1
Evalue2.93e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,3QP1S@4890|Ascomycota,3RRCD@4891|Saccharomycetes,3RZKH@4893|Saccharomycetaceae
Descriptionretrotransposon
Cds size483
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.4315612-UTR-H-akashiwo_Contig116:721392..7214101681387102.4315612-UTR-H-akashiwo_Contig116:721392..721410Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig116 721393..721410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.4445138-CDS-H-akashiwo_Contig116:721410..7218931681387102.4445138-CDS-H-akashiwo_Contig116:721410..721893Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 721411..721893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.19.1prot_H-akashiwo_Contig116.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 721411..721893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.19.1

>prot_H-akashiwo_Contig116.19.1 ID=prot_H-akashiwo_Contig116.19.1|Name=mRNA_H-akashiwo_Contig116.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=161bp
MFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFG
LTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIF
KRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRP
ASKKNKSGNF*
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mRNA from alignment at H-akashiwo_Contig116:721393..721893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.19.1 ID=mRNA_H-akashiwo_Contig116.19.1|Name=mRNA_H-akashiwo_Contig116.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=501bp|location=Sequence derived from alignment at H-akashiwo_Contig116:721393..721893+ (Heterosigma akashiwo CCMP452)
TTGCCTACAACAAGAGAAATGTTTGATCAACTAGCTGGCAGTTGGTATTT
CTCAAGCATGGATATGTTATGGGCATATTGGAGTATACCACTCAGAGAGA
CAGACAGGCACAAAACAGCATTCACACTAAGAAACAAGAAATATTGCTGG
AAAGTGATGTGTTTTGGACTTACAAATGCACCAGCAACATTTTCACATCT
GGTGAACAAAGTCTTCCAAGGATACAACAACGACTTTGCATTATGTTTCC
TAGATGACGtACTAGCTCACTCAGGAAAGGAATTCAGTACACACTTACTG
AACTTGGAAAAGATTTTCAAGAGGATGATAGCAGCCAACCTGAAGTTCAA
GTTACCGAAATGCTTGTTTGGAGCTTCACAAGTACCATGGCTGGGACACA
TCATCACAAGAGAAGGGATAAAACCTGACCCCAAGAAGATAGAAGCAGTG
AAAGGAATGAGAAGACCTGCATCGAAAAAAAACAAGTCAGGCAATTTCTA
G
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:721393..721893+

>mRNA_H-akashiwo_Contig116.19.1 ID=mRNA_H-akashiwo_Contig116.19.1|Name=mRNA_H-akashiwo_Contig116.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=483bp|location=Sequence derived from alignment at H-akashiwo_Contig116:721393..721893+ (Heterosigma akashiwo CCMP452)
ATGTTTGATCAACTAGCTGGCAGTTGGTATTTCTCAAGCATGGATATGTT
ATGGGCATATTGGAGTATACCACTCAGAGAGACAGACAGGCACAAAACAG
CATTCACACTAAGAAACAAGAAATATTGCTGGAAAGTGATGTGTTTTGGA
CTTACAAATGCACCAGCAACATTTTCACATCTGGTGAACAAAGTCTTCCA
AGGATACAACAACGACTTTGCATTATGTTTCCTAGATGACGtACTAGCTC
ACTCAGGAAAGGAATTCAGTACACACTTACTGAACTTGGAAAAGATTTTC
AAGAGGATGATAGCAGCCAACCTGAAGTTCAAGTTACCGAAATGCTTGTT
TGGAGCTTCACAAGTACCATGGCTGGGACACATCATCACAAGAGAAGGGA
TAAAACCTGACCCCAAGAAGATAGAAGCAGTGAAAGGAATGAGAAGACCT
GCATCGAAAAAAAACAAGTCAGGCAATTTCTAG
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