mRNA_H-akashiwo_Contig1159.5.1 (mRNA) Heterosigma akashiwo CCMP452
|
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S3UUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL1_HETAK) HSP 1 Score: 194 bits (492), Expect = 5.250e-60 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3
Query: 33 MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY 320
MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY
Sbjct: 1 MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY 96
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S2Y1T8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1T8_9STRA) HSP 1 Score: 104 bits (260), Expect = 5.840e-26 Identity = 47/91 (51.65%), Postives = 72/91 (79.12%), Query Frame = 3
Query: 54 EALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGM--LGY 320
EALRA+R+ VTA D +Q+Q+LPDG+V++ + HSN++ + ME++FDLH +IQ VKE+I H GT+P++QRL+L+ G+ +CEL D + LG+
Sbjct: 3 EALRAMRHHVTAVDDQQFQSLPDGIVALNVVHSNIRTKYMEVRFDLHSTIQLVKEKISRHCGTSPEFQRLVLQSEGQPVCELDDNLQKLGF 93
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: D8LGT0_ECTSI (Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT0_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 4.390e-22 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 3
Query: 60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGD 305
L A+++WVTA D EQ+ LP+GVVSV ISHSN+ ARM+ELKFDL ++ VK +I TH GT P Q+L LR G+ +C+L D
Sbjct: 5 LAALKDWVTAADGEQFSRLPEGVVSVNISHSNITARMIELKFDLSQTLGDVKGKIYTHCGTNPGMQKLSLRSGGQTMCQLDD 86
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S3GWA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWA4_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.300e-21 Identity = 41/86 (47.67%), Postives = 65/86 (75.58%), Query Frame = 3
Query: 69 IRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
+R+++TA DH QY LPDG+V++ ++HSN+ A ++++ DLH++I VKE+ RTH+GT +QRLIL+ +G+ ICE+ D MLG+
Sbjct: 11 VRDYITAHDHLQYTTLPDGIVAILLTHSNIPANHVDIRLDLHNTIGDVKEKFRTHIGTHVDHQRLILKSDGQTICEMADDNRMLGF 96
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A6H5KGJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ0_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.140e-21 Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 3
Query: 60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
L A+++WV A D EQ+ LP+GVVSV ISHSN+ ARM+ELKFDL +I VK +I TH GT P Q+L LR G+ +C+L D MLG+
Sbjct: 5 LAALKDWVIAADGEQFSRLPEGVVSVNISHSNITARMIELKFDLSQTIGDVKGKIYTHCGTNPGMQKLSLRSGGQTMCQLDDDSKMLGF 93
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A835ZAK6_9STRA (Putative tubulin-specific chaperone B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK6_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.240e-20 Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 3
Query: 60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
+ A++ WVTA D Y++LP G VS+T++HSNL+A M+ELKFDLH +I++VK +I TH GT P Q+L LR G + L D MLGY
Sbjct: 5 MAALKGWVTAADANMYKSLPHGTVSLTVTHSNLKATMIELKFDLHQTIESVKRKIYTHCGTKPDSQKLQLRSAGRVLTMLADDSRMLGY 93
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S2W9K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9K5_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.000e-19 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 3
Query: 66 AIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
AIR++VT D Q+ LP G+++V +HSN+ ARM+ELKFDLH ++ VK ++ H GT Q+QRL+L+ G+ ICEL D MLG+
Sbjct: 19 AIRDYVTQDDGRQWDRLPQGMIAVHCTHSNVSARMIELKFDLHTTVGEVKSKLHRHCGTPAQFQRLVLKDGGQPICELSDDSRMLGF 105
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A8J2SV38_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SV38_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.400e-18 Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 3
Query: 51 HEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
HE +R +++WVTA+D E + LP+GVV + ++HSNL +M+EL+FDLH +I VK R+ H GT Q QRL LR G +I +L D MLG+
Sbjct: 73 HE-MRGVQDWVTARDDENWTLLPEGVVCINVTHSNLNQKMLELRFDLHQTIGEVKARLHLHHGTPSQSQRLTLRDGGVDIAQLDDDSKMLGF 163
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A024GKP5_9STRA (CAP-Gly domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GKP5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.130e-17 Identity = 39/90 (43.33%), Postives = 66/90 (73.33%), Query Frame = 3
Query: 60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQY-QRLILRLNGEEICELGDG--MLGY 320
LRA+RN++TAKD +Y+NLP+G+V +TI+H+ L+ +M++++ DLH +I+ V+ ++ +H GT+P++ Q L+L N + L D MLGY
Sbjct: 5 LRALRNYITAKDGTEYENLPEGIVCLTITHNLLKMQMLDIRLDLHATIEQVRHKVYSHCGTSPEHMQLLLLDSNNSLLARLDDDRKMLGY 94
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S2D093_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D093_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.250e-16 Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3
Query: 69 IRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
IRN++TA D +Q+ LP G+V++ +HSNL +M+ELKFDLH +I +K R+ H GT QRLILR G++I L D M+G+
Sbjct: 20 IRNYITAGDDQQWSGLPQGMVAIHCTHSNLMKKMIELKFDLHTTIGDLKARLHMHCGTPASAQRLILRDGGQDIAHLDDDSKMMGF 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1159.5.1 >prot_H-akashiwo_Contig1159.5.1 ID=prot_H-akashiwo_Contig1159.5.1|Name=mRNA_H-akashiwo_Contig1159.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKback to top mRNA from alignment at H-akashiwo_Contig1159:218515..219487- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1159.5.1 ID=mRNA_H-akashiwo_Contig1159.5.1|Name=mRNA_H-akashiwo_Contig1159.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=973bp|location=Sequence derived from alignment at H-akashiwo_Contig1159:218515..219487- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1159:218515..219487- >mRNA_H-akashiwo_Contig1159.5.1 ID=mRNA_H-akashiwo_Contig1159.5.1|Name=mRNA_H-akashiwo_Contig1159.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig1159:218515..219487- (Heterosigma akashiwo CCMP452)back to top |