mRNA_H-akashiwo_Contig1159.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1159.5.1
Unique NamemRNA_H-akashiwo_Contig1159.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S3UUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL1_HETAK)

HSP 1 Score: 194 bits (492), Expect = 5.250e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3
Query:   33 MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY 320
            MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY
Sbjct:    1 MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY 96          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S2Y1T8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1T8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.840e-26
Identity = 47/91 (51.65%), Postives = 72/91 (79.12%), Query Frame = 3
Query:   54 EALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGM--LGY 320
            EALRA+R+ VTA D +Q+Q+LPDG+V++ + HSN++ + ME++FDLH +IQ VKE+I  H GT+P++QRL+L+  G+ +CEL D +  LG+
Sbjct:    3 EALRAMRHHVTAVDDQQFQSLPDGIVALNVVHSNIRTKYMEVRFDLHSTIQLVKEKISRHCGTSPEFQRLVLQSEGQPVCELDDNLQKLGF 93          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: D8LGT0_ECTSI (Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.390e-22
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 3
Query:   60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGD 305
            L A+++WVTA D EQ+  LP+GVVSV ISHSN+ ARM+ELKFDL  ++  VK +I TH GT P  Q+L LR  G+ +C+L D
Sbjct:    5 LAALKDWVTAADGEQFSRLPEGVVSVNISHSNITARMIELKFDLSQTLGDVKGKIYTHCGTNPGMQKLSLRSGGQTMCQLDD 86          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S3GWA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWA4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-21
Identity = 41/86 (47.67%), Postives = 65/86 (75.58%), Query Frame = 3
Query:   69 IRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
            +R+++TA DH QY  LPDG+V++ ++HSN+ A  ++++ DLH++I  VKE+ RTH+GT   +QRLIL+ +G+ ICE+ D   MLG+
Sbjct:   11 VRDYITAHDHLQYTTLPDGIVAILLTHSNIPANHVDIRLDLHNTIGDVKEKFRTHIGTHVDHQRLILKSDGQTICEMADDNRMLGF 96          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A6H5KGJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.140e-21
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
            L A+++WV A D EQ+  LP+GVVSV ISHSN+ ARM+ELKFDL  +I  VK +I TH GT P  Q+L LR  G+ +C+L D   MLG+
Sbjct:    5 LAALKDWVIAADGEQFSRLPEGVVSVNISHSNITARMIELKFDLSQTIGDVKGKIYTHCGTNPGMQKLSLRSGGQTMCQLDDDSKMLGF 93          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A835ZAK6_9STRA (Putative tubulin-specific chaperone B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.240e-20
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
            + A++ WVTA D   Y++LP G VS+T++HSNL+A M+ELKFDLH +I++VK +I TH GT P  Q+L LR  G  +  L D   MLGY
Sbjct:    5 MAALKGWVTAADANMYKSLPHGTVSLTVTHSNLKATMIELKFDLHQTIESVKRKIYTHCGTKPDSQKLQLRSAGRVLTMLADDSRMLGY 93          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S2W9K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9K5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.000e-19
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 3
Query:   66 AIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
            AIR++VT  D  Q+  LP G+++V  +HSN+ ARM+ELKFDLH ++  VK ++  H GT  Q+QRL+L+  G+ ICEL D   MLG+
Sbjct:   19 AIRDYVTQDDGRQWDRLPQGMIAVHCTHSNVSARMIELKFDLHTTVGEVKSKLHRHCGTPAQFQRLVLKDGGQPICELSDDSRMLGF 105          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A8J2SV38_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SV38_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-18
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   51 HEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
            HE +R +++WVTA+D E +  LP+GVV + ++HSNL  +M+EL+FDLH +I  VK R+  H GT  Q QRL LR  G +I +L D   MLG+
Sbjct:   73 HE-MRGVQDWVTARDDENWTLLPEGVVCINVTHSNLNQKMLELRFDLHQTIGEVKARLHLHHGTPSQSQRLTLRDGGVDIAQLDDDSKMLGF 163          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A024GKP5_9STRA (CAP-Gly domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GKP5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.130e-17
Identity = 39/90 (43.33%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   60 LRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQY-QRLILRLNGEEICELGDG--MLGY 320
            LRA+RN++TAKD  +Y+NLP+G+V +TI+H+ L+ +M++++ DLH +I+ V+ ++ +H GT+P++ Q L+L  N   +  L D   MLGY
Sbjct:    5 LRALRNYITAKDGTEYENLPEGIVCLTITHNLLKMQMLDIRLDLHATIEQVRHKVYSHCGTSPEHMQLLLLDSNNSLLARLDDDRKMLGY 94          
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Match: A0A7S2D093_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D093_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.250e-16
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3
Query:   69 IRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGY 320
            IRN++TA D +Q+  LP G+V++  +HSNL  +M+ELKFDLH +I  +K R+  H GT    QRLILR  G++I  L D   M+G+
Sbjct:   20 IRNYITAGDDQQWSGLPQGMVAIHCTHSNLMKKMIELKFDLHTTIGDLKARLHMHCGTPASAQRLILRDGGQDIAHLDDDSKMMGF 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1159.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UUL1_HETAK5.250e-60100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y1T8_9STRA5.840e-2651.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D8LGT0_ECTSI4.390e-2256.10Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus ... [more]
A0A7S3GWA4_9STRA1.300e-2147.67Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A6H5KGJ0_9PHAE2.140e-2155.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAK6_9STRA2.240e-2051.69Putative tubulin-specific chaperone B n=1 Tax=Trib... [more]
A0A7S2W9K5_9STRA3.000e-1949.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SV38_9STRA1.400e-1848.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024GKP5_9STRA8.130e-1743.33CAP-Gly domain-containing protein n=2 Tax=Albugo T... [more]
A0A7S2D093_9STRA1.250e-1647.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1159contigH-akashiwo_Contig1159:218515..219487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGT0
Preferred nameTBCB
PFAMsCAP_GLY,Ubiquitin_2
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K10423,ko:K17262
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009798,GO:0009987,GO:0009994,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
Exons3
Evalue3.48e-23
EggNOG OGsKOG3206@1|root,KOG3206@2759|Eukaryota
Descriptioncell differentiation
Cds size288
COG categoryS
BRITEko00000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.5420136-CDS-H-akashiwo_Contig1159:218514..2185471681387101.5420136-CDS-H-akashiwo_Contig1159:218514..218547Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1159 218515..218547 -
1681387101.5555592-CDS-H-akashiwo_Contig1159:219069..2191561681387101.5555592-CDS-H-akashiwo_Contig1159:219069..219156Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1159 219070..219156 -
1681387101.5648172-CDS-H-akashiwo_Contig1159:219287..2194551681387101.5648172-CDS-H-akashiwo_Contig1159:219287..219455Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1159 219288..219455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387101.5740306-UTR-H-akashiwo_Contig1159:219455..2194871681387101.5740306-UTR-H-akashiwo_Contig1159:219455..219487Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1159 219456..219487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1159.5.1prot_H-akashiwo_Contig1159.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1159 218515..219455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1159.5.1

>prot_H-akashiwo_Contig1159.5.1 ID=prot_H-akashiwo_Contig1159.5.1|Name=mRNA_H-akashiwo_Contig1159.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp
MARQEQHEALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELK
FDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDGMLGY
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mRNA from alignment at H-akashiwo_Contig1159:218515..219487-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1159.5.1 ID=mRNA_H-akashiwo_Contig1159.5.1|Name=mRNA_H-akashiwo_Contig1159.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=973bp|location=Sequence derived from alignment at H-akashiwo_Contig1159:218515..219487- (Heterosigma akashiwo CCMP452)
CAACGGTTGCAGCATTGAAAGTTTGTTGGAAAATGGCCCGCCAGGAACAG CATGAGGCATTGAGGGCAATCAGAAACTGGGTCACAGCCAAAGACCACGA GCAATATCAAAACCTTCCAGATGGGGTTGTCTCTGTCACGATCTCTCACT CAAATCTGCAAGCACGGATGATGGAGCTGAAGTTCGACTTGCATGATTCA GTAAGCAACATCAATAATACGAACTACAGTCTTATACGGAAAGGGTAGCT GCAATTTGTTTACGCCTGTTGAAACAGTGTGATCTGCTGCTAAATTATTT CTTGTTCTTCTATTTGTTTCCCTCTGCATAGATTCAAACTGTGAAAGAGA GAATTCGCACCCATGTCGGCACAGCACCTCAGTACCAAAGGCTCATCCTA CGCTTGAATGGCGAAGAAGTAAGTTTTTCCATCTCTGTTAATTCTAAGTG CCTTTGGGGGGTAGCTTCCAGCCACCTTTTGCCTGGAAAGTGCAATGAGA TCGTGGTACGAATGCCACAATATTACCTCTTCATACTCTCCAAACACTAT AGCAAAATAAGAAGACACACCGCAAAAACAAATAATCAGCCACCTAAAAT ACGCAGCAGTCTCACCCGCTACTGCCTGAGGAAAGGCAATCCCACGCCAT CCTCAAAGCCGGCGCTGGTCCACTTCAGCGTTGAACCCCGAAGACGCAGG TCCAGAGCCGTAATTAGGGATGGCAGCATCAATTGCGATTCAGCCATTGT GCCAATTTGAAATTGAGTTCTTTCATGTTCAAGGGATAGCAGCTGGCTAA ATCCAAGTTGACGCGCAGTCTGAAATATGAATGTAGGTGCTGTCAAAGGC AAAAGTGATTGTCGTGAAAAGGTGAACAAACATTCTTGGCTTTTTGTTGT GTGTGTGTGTGTGTGTGTGTTTTTTTTTGTCTTTCGATAGATCTGTGAAC TTGGAGATGGTATGCTGGGCTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1159:218515..219487-

>mRNA_H-akashiwo_Contig1159.5.1 ID=mRNA_H-akashiwo_Contig1159.5.1|Name=mRNA_H-akashiwo_Contig1159.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig1159:218515..219487- (Heterosigma akashiwo CCMP452)
ATGGCCCGCCAGGAACAGCATGAGGCATTGAGGGCAATCAGAAACTGGGT
CACAGCCAAAGACCACGAGCAATATCAAAACCTTCCAGATGGGGTTGTCT
CTGTCACGATCTCTCACTCAAATCTGCAAGCACGGATGATGGAGCTGAAG
TTCGACTTGCATGATTCAATTCAAACTGTGAAAGAGAGAATTCGCACCCA
TGTCGGCACAGCACCTCAGTACCAAAGGCTCATCCTACGCTTGAATGGCG
AAGAAATCTGTGAACTTGGAGATGGTATGCTGGGCTAC
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