mRNA_H-akashiwo_Contig1158.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1158.7.1
Unique NamemRNA_H-akashiwo_Contig1158.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1158.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1158contigH-akashiwo_Contig1158:151811..153558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.8926485-CDS-H-akashiwo_Contig1158:151810..1518801681387100.8926485-CDS-H-akashiwo_Contig1158:151810..151880Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1158 151811..151880 +
1681387100.9076736-CDS-H-akashiwo_Contig1158:153396..1535571681387100.9076736-CDS-H-akashiwo_Contig1158:153396..153557Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1158 153397..153557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1158.7.1prot_H-akashiwo_Contig1158.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1158 151811..153557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1158.7.1

>prot_H-akashiwo_Contig1158.7.1 ID=prot_H-akashiwo_Contig1158.7.1|Name=mRNA_H-akashiwo_Contig1158.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=77bp
RQRELPRLQPGLPAGGRLLRGLPGHGLGGGHGAGGGRLQARRHRLQGAVL
LRAARGAADRDRVGQRGALRHRRGGAR
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mRNA from alignment at H-akashiwo_Contig1158:151811..153558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1158.7.1 ID=mRNA_H-akashiwo_Contig1158.7.1|Name=mRNA_H-akashiwo_Contig1158.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1748bp|location=Sequence derived from alignment at H-akashiwo_Contig1158:151811..153558+ (Heterosigma akashiwo CCMP452)
CGACAACGTGAACTGCCTCGCCTTCAGCCTGGACTGCCGGCTGGTGGCCG
CCTCCTCCGAGGGCTTCCAGGTGACACGACGCGGCGCTCATGTAGATGTA
TGTATATACTGCTCAGTTTCTTAAATGGAGTCCTTTTTGGGAGCGCGGAA
AACCCTTGTTTCACTCTAGCTCAAAGCAGAATGCAAATATACAAATGAAC
TTCCTTGTAGAGTATGAAATGTTTGCCATAAAGAGCTCTCTATCCATTGA
ACTGAACTGAACCAGGGTTTGAGTTTGTGGGTTAAAGTAAACTGGCCCAA
AGAACAAGAGAGTCTTCTCCCTCCTAAGATTGCACGCACATAATTCCATT
TCTCTAAAAGCATTTCAATCAATACAGCTCTTCAAAACAAACATTTTATG
CCAAGGAGTTTCTTTGATATTATTTGTATTTTGCTTCGAGTTAGACTGAA
ACAAAGAATTTCCAAAGTTGACGGCACCAACTTGGAAGGCTTGCCACTTC
GCCGGAACGTAATGTCTGGGCCCCGCGAGCTAAGTGGCCCCTCCTTACAT
GCTTAGGATCGCCACAGCCAAGTACAAAAAGCGCTGTGCTTCCGCAACTC
AAAAGCAATCCATCCAAGAAACAGAGAAGTATGTACACAATTGCAATGGG
ATATATACTAGTAAGTATACAGATTGATATGGTTGTGATGTACAGCCGTG
GACAGCTCAAATTGCTCGAAGCGCCGGCTTGGAACGCTGTGCCGCGAGTT
CGAACGCAACCATGACAACTTGGTAACAGGCCGCCAAAGCCAAGTTCGAG
CTCTCGACGAACCCCGACGGCTTGTTGAAGCCGAGCATGACCTCTCGAAC
AACGCCGACAAAGAGTCAGCGATAAGGACAACCAAGGGATGAGCGAGGAC
CGACGGCGGCGGTCGTTGGGTAAAGCGCCACGCCCGACGAACCGATCCTG
CTGGTGCTGCTGGACCCGAGTGATCACGACAAACAACGTGAAAGAAACTT
GGTCAGTCAAGAGCACGGGGACAGGACGCTGGAAAGGTGTGAATCTGGAT
ATAGCCTGGGCTGTGGAGCTCAAGCAATGAAGTTGAGCCCCTTGTAATGT
TGTTAGACAGTTTCAAAATCAGTTTGAGCGCACAGTCATCCTGCGTTCTG
CACAAGGATTCTACCTGAGGCTCCCTTTTCATCGATGCGTACTGGCGATT
GTTTGTTCTGCCAACCAGGGATATCGCCGAGAAATATGGAGATGCTATTT
ACACTTTTCTGGAGTTCATTCTTGAGGGAAAGCATGTTGGTTAACCAGTT
GTCATGGCCAGCCTGAGAGCATGGAGAAGAATTGACTTGTCCTTTTTGAA
GAGCGCATCATTGACTTATTAGATGCCACAGTGCTCTTGGTGGATTCACT
CCGCCTCTCGAGAACTCGTTGAGTCTGTCTCTCCGCACCAAATGTGTTCC
CATCCCAATTTTGCGCTACCGAGGCTGCACCGCCGCCTTCACACCCCCCA
CCCCTCCCCCCCCTGGCACCGCGCCCAGCTTGCCCCCTCCCCTTCCCCCC
CCCGGCCCCTTCCTCCTGTGTGGCGCGCGGGGGCAGGTCATGGTCTGGGA
GGTGGCCACGGGGCTGGTGGTGGGCGTCTACAAGCACGACGACACCGTCT
GCAAGGTGCAGTTCTCCTCCGTGCGGCCCGAGGCGCTGCTGACCGTGACC
GAGTCGGGCAACGTGGCGCTCTTCGACACCGCCGCGGGGGCGCGCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1158:151811..153558+

>mRNA_H-akashiwo_Contig1158.7.1 ID=mRNA_H-akashiwo_Contig1158.7.1|Name=mRNA_H-akashiwo_Contig1158.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=231bp|location=Sequence derived from alignment at H-akashiwo_Contig1158:151811..153558+ (Heterosigma akashiwo CCMP452)
CGACAACGTGAACTGCCTCGCCTTCAGCCTGGACTGCCGGCTGGTGGCCG
CCTCCTCCGAGGGCTTCCAGGTCATGGTCTGGGAGGTGGCCACGGGGCTG
GTGGTGGGCGTCTACAAGCACGACGACACCGTCTGCAAGGTGCAGTTCTC
CTCCGTGCGGCCCGAGGCGCTGCTGACCGTGACCGAGTCGGGCAACGTGG
CGCTCTTCGACACCGCCGCGGGGGCGCGCGC
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