mRNA_H-akashiwo_Contig1157.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1157.4.1
Unique NamemRNA_H-akashiwo_Contig1157.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1157.4.1 vs. uniprot
Match: A0A6V1Q3J9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q3J9_HETAK)

HSP 1 Score: 633 bits (1633), Expect = 2.810e-219
Identity = 357/376 (94.95%), Postives = 360/376 (95.74%), Query Frame = 2 
Query:  668 VKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILGEVDVLGGGAGDGAKAAAAVAGGAGGKVGSPKKVVSVQISSDMTEQDILALAGDSSMKALGEGSRALGQVGTKLNYWAKSEDGQQSVSELIDAIEASKKVLPALQRAAAQVKKEWETEFKGEEMTTFDKLFDGIQRGIDAIKESTEVKAALDEAKGSFGAVGAKTGAATQRMTTALKSSTAEDATFMESFNAGGGGDAEDADR--LRAPPLGTKFVKNFQDPNRQLQSSKAPTEARAPTAPSAKVEEVAPPPKAEEK 1789
            VKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILGEVDVLGGGAGDGAKAAAAVAGGAGGKVGSPKKVVSVQISSDMTEQDILALAGDSSMKALGEGSRALGQVGTKLNYWAKSEDGQQSVSELIDAIEASKKVLPALQRAAAQVKKEWETEFKGEEMTTFDKLFDGIQRGIDAIKESTEVKAALDEAKGSFGAVGAKTGAATQRMTTALKSSTAEDATFMESFNA      E+  +  +     GTKFVKNFQDPNRQLQSSKAPTEARAPTAPSAKVEEVAP PKAEEK
Sbjct:  202 VKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILGEVDVLGGGAGDGAKAAAAVAGGAGGKVGSPKKVVSVQISSDMTEQDILALAGDSSMKALGEGSRALGQVGTKLNYWAKSEDGQQSVSELIDAIEASKKVLPALQRAAAQVKKEWETEFKGEEMTTFDKLFDGIQRGIDAIKESTEVKAALDEAKGSFGAVGAKTGAATQRMTTALKSSTAEDATFMESFNAV----VEEMQKTLIAVAAAGTKFVKNFQDPNRQLQSSKAPTEARAPTAPSAKVEEVAPAPKAEEK 573
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BLAST of mRNA_H-akashiwo_Contig1157.4.1 vs. uniprot
Match: A0A6U1MNE3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MNE3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.620e-23
Identity = 89/289 (30.80%), Postives = 156/289 (53.98%), Query Frame = 2 
Query:  638 EETLLVQLETVKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPA-ADDIDT-ARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILGEVDVLGGGAGDGAKAAAAVAGGAGGKVGSPKKV-----VSVQISSDMTEQDILALAGDSSMKALGEGSRALGQVGTKLNYWAKSEDGQQSVSELIDAIEASKKVLPALQRAAAQVKKEWETE-FKGEEMTTFDKLFDGIQRGIDAIKESTEVKAALD 1480
            EE LL+ +E VK ++++  + + ++ A + KA+L+AIE VV ++LE C+ Q+R  + DT  R   M VA+  LP    D+   ARQYSW EV EL +LL+ + +  Q+R+ +I  +K KF EA +Q+  +L  V++L  G G  A   +        +VG+  +V     V + I+ DMTE D+L +A DS +      ++A+G +      W +SE GQ +   +++A+        +++     V + +     KG++MT F  + +       +I +S EV+ +++
Sbjct:  110 EENLLLNMEEVKERIEDAALRELMECAISAKANLVAIEMVVAQELETCIVQLRANIQDTRERCDLMKVALDSLPGQGQDLQALARQYSWEEVQELQELLLDSIEACQERNFKINNIKLKFAEALRQRQSVLEGVELLNAG-GRAALYPSKEQQRRAQQVGAMAEVMKAASVKLTITRDMTEVDMLNVAKDSLVDFATNSTQAVGAIVISTGQWVQSEQGQDAAGAVVNAVTGVTGFFASVKDVVVTVVETFNNNSVKGDDMTNFKIIANSFINATASIPKSKEVQESVN 397
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BLAST of mRNA_H-akashiwo_Contig1157.4.1 vs. uniprot
Match: F0Y4U3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U3_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 4.580e-15
Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 2 
Query:  629 CQEEETLLVQLETVKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILGEVDVLG 1045
            C  EE LLVQL+ V  + +E  +   + AA   KA L+AIE ++I+D+ +C++ + +E  + + RI  M   ++ LPAADD D  R YSW +V  L + L      + + +A + AL+Q+  +A  Q+  ++G   VLG
Sbjct:  191 CAREEQLLVQLQDVAQRTEEAAVAASLAAAIETKAGLVAIELLLIDDVAECVAAVAKEESEIDKRIAAMRTTLASLPAADDADALRLYSWSQVEALQEELRLGALAIAETEASVAALRQRINDALDQRDAVIGSAPVLG 329
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BLAST of mRNA_H-akashiwo_Contig1157.4.1 vs. uniprot
Match: A0A7S4E2A8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2A8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.170e-14
Identity = 48/133 (36.09%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:  629 CQEEETLLVQLETVKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALILG 1027
            C+ EE LLVQL+ V+ +  E+ +   + AA   KA L+AIE V+IED+++C  Q++ E     +RI+ M   ++ LPA DD +  R YSW +V  L   L  +   + + +A + AL+Q+  +A  Q+  +LG
Sbjct:  149 CRREEQLLVQLQDVRQRTSEDAVAASLAAAIETKAGLVAIELVLIEDVDECSGQIKVEQDQINARIEAMETTLASLPATDDGEALRLYSWQQVEALQAQLAESAIAIAETEASVAALRQRINDALDQRDAVLG 281
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BLAST of mRNA_H-akashiwo_Contig1157.4.1 vs. uniprot
Match: A0A7S3JNC5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNC5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.990e-13
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 2 
Query:  638 EETLLVQLETVKTQVKEEQIFKQIDAASNVKADLIAIESVVIEDLEDCLSQMREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAFDNLQKRDARIGALKQKFREATQQKALIL 1024
            E+ LLVQL+ V  + KE +I K I+ A   KA L+AIE ++IED+E+C +Q+ EE  + + R++ M      LPA DD    R +SW +V  L D L  +   + K DA++  L+ +  +A  Q+  +L
Sbjct:  375 EKALLVQLQDVAQRTKESEIKKSIEQAIETKASLVAIELLLIEDIEECATQVAEEGKEMDRRLEAMKKTRDALPAVDDTVALRAFSWSQVEMLEDQLKESALAIAKTDAKVRILRARIADALDQRDAVL 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1157.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6V1Q3J9_HETAK2.810e-21994.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1MNE3_9STRA2.620e-2330.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y4U3_AURAN4.580e-1535.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4E2A8_9STRA2.170e-1436.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JNC5_9STRA5.990e-1337.21Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1157contigH-akashiwo_Contig1157:47357..49420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTP6
Model size2064
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-18
EggNOG OGs2C8GG@1|root,2T1QJ@2759|Eukaryota
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.7482605-UTR-H-akashiwo_Contig1157:47356..481461681387100.7482605-UTR-H-akashiwo_Contig1157:47356..48146Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1157 47357..48146 +
1681387100.769122-UTR-H-akashiwo_Contig1157:49148..494201681387100.769122-UTR-H-akashiwo_Contig1157:49148..49420Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1157 49149..49420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.7589998-CDS-H-akashiwo_Contig1157:48146..491481681387100.7589998-CDS-H-akashiwo_Contig1157:48146..49148Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1157 48147..49148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1157.4.1prot_H-akashiwo_Contig1157.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1157 48147..49148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1157.4.1

>prot_H-akashiwo_Contig1157.4.1 ID=prot_H-akashiwo_Contig1157.4.1|Name=mRNA_H-akashiwo_Contig1157.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=334bp
MREELIDTESRIKTMTVAVSQLPAADDIDTARQYSWGEVSELNDLLVAAF
DNLQKRDARIGALKQKFREATQQKALILGEVDVLGGGAGDGAKAAAAVAG
GAGGKVGSPKKVVSVQISSDMTEQDILALAGDSSMKALGEGSRALGQVGT
KLNYWAKSEDGQQSVSELIDAIEASKKVLPALQRAAAQVKKEWETEFKGE
EMTTFDKLFDGIQRGIDAIKESTEVKAALDEAKGSFGAVGAKTGAATQRM
TTALKSSTAEDATFMESFNAGGGGDAEDADRLRAPPLGTKFVKNFQDPNR
QLQSSKAPTEARAPTAPSAKVEEVAPPPKAEEK*
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mRNA from alignment at H-akashiwo_Contig1157:47357..49420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1157.4.1 ID=mRNA_H-akashiwo_Contig1157.4.1|Name=mRNA_H-akashiwo_Contig1157.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2064bp|location=Sequence derived from alignment at H-akashiwo_Contig1157:47357..49420+ (Heterosigma akashiwo CCMP452)
CCCACGCATTGTTTCGAGAATCATTGGTGCTTCAATCTCCACCCAACATC
CAACGAATTCAGCATGGTGAAGCTTTCCCTCGTCGCCATGGCGGTGTCTG
CCATCTGCCTCCAGCAGAGCAGCGGGTTCATGGTTCCCAGCTCGAACAAG
ATAAATGCCATTCAGGGGTCATCAGCGAACTGGCTTCGGATGGCGGGGGA
GTCAGTTGATCTTGACTCGCTCAAGGATGCGTCTGTGAGGGAGGTAGAGG
AGGTGGTGAAAAGCCCGCCTGCCTCCGAACTCAAAGGTACTTCAGATGAA
ATCACCGAGCAGGTCAGCGGTATCGAAGGCAAGCAGGAAGAGAAGGCGAG
CACCATTCAGAGGTCGAAGGCTTTGGATGAGCTCATGGAAGAATCGATAT
TTTCCCAGAATAAGGGCATTTCAAGGAAAACTCGGATTGAGGACGTGAAA
TCACAGTTGAGCAAATCGATCAACCTGAAAAAGAGGCTGAAAAATGCCAT
AGCCAAGGAAATTGGGGAGCTGAAGGTGAAACTGGACGGTGAACTTGAGG
AGGAGAAGGGGTTGGAGATTGAAATTAAAATGCTCATTAGCCAGTTGGAG
GAAAACATCGCCCAGAAGAAGGAGCTGCTGTCAAGAAGAGGAGACCCTCC
TGGTGCAGCTGGAGACTGTCAAAACCCAGGTGAAGGAGGAGCAGATCTTC
AAGCAGATCGACGCTGCCTCCAATGTCAAAGCTGATCTGATTGCCATTGA
GTCTGTGGTGATTGAGGACCTGGAGGACTGCCTGTCTCAGATGCGGGAGG
AGCTGATCGACACAGAGAGCCGCATCAAGACGATGACCGTCGCGGTGTCC
CAGCTGCCGGCCGCGGACGACATCGACACGGCCCGGCAGTACAGCTGGGG
CGAGGTGTCCGAGCTGAACGACCTGCTGGTCGCGGCCTTCGACAACCTGC
AGAAGCGCGACGCGCGCATCGGTGCCCTCAAGCAGAAGTTCCGCGAGGCC
ACCCAGCAGAAGGCGCTCATCCTGGGCGAGGTGGACGTGCTGGGTGGTGG
GGCTGGAGACGGGGCCAAGGCGGCGGCAGCAGTGGCCGGCGGGGCGGGCG
GCAAGGTCGGCAGCCCCAAGAAGGTGGTCTCCGTGCAGATCTCCTCGGAT
ATGACCGAGCAGGACATCCTGGCGCTGGCCGGGGACTCTTCGATGAAGGC
GCTGGGCGAGGGCAGCCGCGCGCTCGGCCAGGTGGGCACCAAGCTCAACT
ACTGGGCAAAGAGCGAGGACGGCCAGCAGAGCGTGAGCGAGCTGATCGAC
GCCATCGAGGCCTCGAAGAAGGTGCTGCCCGCCCTGCAGCGGGCGGCCGC
GCAGGTGAAGAAGGAGTGGGAGACCGAGTTCAAGGGGGAGGAGATGACCA
CTTTCGACAAGCTGTTTGACGGCATCCAGCGGGGGATCGACGCCATCAAG
GAGTCCACCGAGGTGAAGGCCGCGCTCGACGAGGCGAAGGGGTCCTTTGG
CGCCGTGGGCGCCAAGACCGGCGCCGCCACTCAGCGGATGACCACCGCGC
TGAAGTCGAGCACCGCGGAGGACGCGACGTTCATGGAGTCGTTCAACGCG
GGTGGTGGAGGAGATGCAGAAGACGCTGATCGCCTGCGCGCGCCGCCATT
GGGCACCAAGTTTGTGAAGAACTTCCAGGACCCCAACCGGCAACTGCAGT
CCAGCAAAGCCCCCACTGAAGCCCGGGCCCCAACCGCCCCGTCGGCCAAG
GTGGAGGAGGTGGCCCCGCCCCCCAAGGCGGAGGAGAAGTGATTTCGGTG
GTTTCATGTGAGCTTTGTATCATGTGAAAATGAAAAATATATATCAGAAA
CATGAAAAAATATCAGCGGGCTTTTTCTTCTGCCGCTGGCTGGCACTGTT
TTTTTGTTGGTGGGCTAAGGCGCACGCTTCAAAAACTGGGCAGTGGAAAG
GATTGGCTGTAAGCGAGATACTAGCCAGAACACTTCACAGCTTTAATTAC
CCTCTGTTGCACGCTACTGCTTCCTCGTCGTGTATTGGTTTCTTCTGTCA
TCCTTTACTGCTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1157:47357..49420+

>mRNA_H-akashiwo_Contig1157.4.1 ID=mRNA_H-akashiwo_Contig1157.4.1|Name=mRNA_H-akashiwo_Contig1157.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1002bp|location=Sequence derived from alignment at H-akashiwo_Contig1157:47357..49420+ (Heterosigma akashiwo CCMP452)
ATGCGGGAGGAGCTGATCGACACAGAGAGCCGCATCAAGACGATGACCGT
CGCGGTGTCCCAGCTGCCGGCCGCGGACGACATCGACACGGCCCGGCAGT
ACAGCTGGGGCGAGGTGTCCGAGCTGAACGACCTGCTGGTCGCGGCCTTC
GACAACCTGCAGAAGCGCGACGCGCGCATCGGTGCCCTCAAGCAGAAGTT
CCGCGAGGCCACCCAGCAGAAGGCGCTCATCCTGGGCGAGGTGGACGTGC
TGGGTGGTGGGGCTGGAGACGGGGCCAAGGCGGCGGCAGCAGTGGCCGGC
GGGGCGGGCGGCAAGGTCGGCAGCCCCAAGAAGGTGGTCTCCGTGCAGAT
CTCCTCGGATATGACCGAGCAGGACATCCTGGCGCTGGCCGGGGACTCTT
CGATGAAGGCGCTGGGCGAGGGCAGCCGCGCGCTCGGCCAGGTGGGCACC
AAGCTCAACTACTGGGCAAAGAGCGAGGACGGCCAGCAGAGCGTGAGCGA
GCTGATCGACGCCATCGAGGCCTCGAAGAAGGTGCTGCCCGCCCTGCAGC
GGGCGGCCGCGCAGGTGAAGAAGGAGTGGGAGACCGAGTTCAAGGGGGAG
GAGATGACCACTTTCGACAAGCTGTTTGACGGCATCCAGCGGGGGATCGA
CGCCATCAAGGAGTCCACCGAGGTGAAGGCCGCGCTCGACGAGGCGAAGG
GGTCCTTTGGCGCCGTGGGCGCCAAGACCGGCGCCGCCACTCAGCGGATG
ACCACCGCGCTGAAGTCGAGCACCGCGGAGGACGCGACGTTCATGGAGTC
GTTCAACGCGGGTGGTGGAGGAGATGCAGAAGACGCTGATCGCCTGCGCG
CGCCGCCATTGGGCACCAAGTTTGTGAAGAACTTCCAGGACCCCAACCGG
CAACTGCAGTCCAGCAAAGCCCCCACTGAAGCCCGGGCCCCAACCGCCCC
GTCGGCCAAGGTGGAGGAGGTGGCCCCGCCCCCCAAGGCGGAGGAGAAGT
GA
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